Incidental Mutation 'IGL02674:Chga'
| ID |
303056 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Chga
|
| Ensembl Gene |
ENSMUSG00000021194 |
| Gene Name |
chromogranin A |
| Synonyms |
ChrA |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.068)
|
| Stock # |
IGL02674
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
12 |
| Chromosomal Location |
102521228-102531287 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 102529160 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 379
(D379G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000021610
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000021610]
|
| AlphaFold |
P26339 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000021610
AA Change: D379G
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000021610
Gene: ENSMUSG00000021194
AA Change: D379G
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
18 |
N/A |
INTRINSIC |
|
Pfam:Granin
|
25 |
95 |
3e-26 |
PFAM |
|
Pfam:Granin
|
87 |
463 |
1.7e-95 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000223100
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a member of the granin family of acidic secretory glycoproteins that are expressed in endocrine cells and neurons. The encoded preproprotein undergoes proteolytic processing to generate multiple functions peptides including pancreastatin, catestatin and serpinin. The encoded protein plays important roles in the neuroendocrine system including regulated secretion of peptide hormones and neurotransmitters. Mice lacking the encoded protein exhibit elevated blood pressure which can be rescued by transgenic expression of the human ortholog. [provided by RefSeq, Nov 2015]
PHENOTYPE: Homozygotes and heterozygotes for one allele display hypertension, abnormal plasma and adrenal adrenaline and noradrenaline levels and, in homozygotes, partial embryonic lethality. Homozygotes for a second allele only have elevated urinary adrenaline, noradrenaline and dopamine levels. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Ago2 |
T |
C |
15: 72,983,643 (GRCm39) |
R689G |
probably damaging |
Het |
| Agrn |
C |
T |
4: 156,259,018 (GRCm39) |
|
probably benign |
Het |
| Akna |
A |
T |
4: 63,289,181 (GRCm39) |
C1247* |
probably null |
Het |
| Appl1 |
T |
G |
14: 26,671,418 (GRCm39) |
T345P |
possibly damaging |
Het |
| Chrna6 |
C |
T |
8: 27,896,879 (GRCm39) |
A333T |
probably benign |
Het |
| Col14a1 |
G |
A |
15: 55,282,178 (GRCm39) |
G813E |
unknown |
Het |
| Csgalnact1 |
C |
A |
8: 68,854,144 (GRCm39) |
G219V |
probably damaging |
Het |
| Dnhd1 |
A |
G |
7: 105,370,688 (GRCm39) |
Q4656R |
probably benign |
Het |
| Dock9 |
A |
C |
14: 121,833,023 (GRCm39) |
|
probably null |
Het |
| Fat4 |
A |
G |
3: 39,037,486 (GRCm39) |
N3713D |
probably benign |
Het |
| Fsd1 |
A |
T |
17: 56,303,483 (GRCm39) |
T452S |
probably benign |
Het |
| G6pc2 |
A |
G |
2: 69,056,910 (GRCm39) |
|
probably null |
Het |
| Gfus |
T |
C |
15: 75,798,238 (GRCm39) |
D178G |
probably damaging |
Het |
| Itprid1 |
A |
G |
6: 55,874,913 (GRCm39) |
T288A |
probably benign |
Het |
| Kcnh4 |
C |
A |
11: 100,637,720 (GRCm39) |
V646L |
possibly damaging |
Het |
| Kcnk1 |
T |
C |
8: 126,751,753 (GRCm39) |
Y120H |
probably damaging |
Het |
| L3mbtl3 |
C |
T |
10: 26,158,711 (GRCm39) |
E646K |
unknown |
Het |
| Lrrc4c |
T |
C |
2: 97,460,120 (GRCm39) |
W249R |
probably damaging |
Het |
| Meox1 |
A |
T |
11: 101,784,767 (GRCm39) |
L22H |
probably damaging |
Het |
| Mrgpra4 |
C |
T |
7: 47,630,690 (GRCm39) |
V304M |
probably benign |
Het |
| Ncaph |
T |
C |
2: 126,955,496 (GRCm39) |
Y554C |
probably damaging |
Het |
| Nfx1 |
T |
C |
4: 40,999,717 (GRCm39) |
|
probably null |
Het |
| Or10p1 |
A |
C |
10: 129,443,939 (GRCm39) |
M137R |
possibly damaging |
Het |
| Or8g37 |
A |
G |
9: 39,730,934 (GRCm39) |
|
probably null |
Het |
| Otol1 |
C |
T |
3: 69,926,077 (GRCm39) |
P84L |
probably benign |
Het |
| Pcdhb11 |
T |
C |
18: 37,556,667 (GRCm39) |
S666P |
probably damaging |
Het |
| Pou2f3 |
T |
C |
9: 43,050,628 (GRCm39) |
K244R |
probably damaging |
Het |
| Ppp6r1 |
T |
C |
7: 4,649,812 (GRCm39) |
N51S |
probably damaging |
Het |
| Prdm4 |
A |
T |
10: 85,729,263 (GRCm39) |
L715M |
probably damaging |
Het |
| Rgs11 |
G |
A |
17: 26,426,605 (GRCm39) |
V279I |
probably benign |
Het |
| Rsc1a1 |
G |
T |
4: 141,411,406 (GRCm39) |
P502Q |
probably damaging |
Het |
| Senp1 |
T |
C |
15: 97,954,840 (GRCm39) |
E448G |
probably damaging |
Het |
| Shd |
A |
G |
17: 56,278,554 (GRCm39) |
D39G |
possibly damaging |
Het |
| Skint5 |
A |
C |
4: 113,487,582 (GRCm39) |
|
probably benign |
Het |
| Tmprss15 |
T |
G |
16: 78,798,682 (GRCm39) |
T667P |
possibly damaging |
Het |
| Vps13b |
A |
T |
15: 35,640,104 (GRCm39) |
M1325L |
probably benign |
Het |
| Zfp263 |
T |
C |
16: 3,564,629 (GRCm39) |
|
probably benign |
Het |
| Zfp786 |
A |
G |
6: 47,797,427 (GRCm39) |
F504L |
probably benign |
Het |
|
| Other mutations in Chga |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00227:Chga
|
APN |
12 |
102,529,058 (GRCm39) |
missense |
probably damaging |
0.98 |
|
FR4589:Chga
|
UTSW |
12 |
102,527,661 (GRCm39) |
small insertion |
probably benign |
|
|
R0018:Chga
|
UTSW |
12 |
102,524,764 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0463:Chga
|
UTSW |
12 |
102,529,210 (GRCm39) |
nonsense |
probably null |
|
|
R1164:Chga
|
UTSW |
12 |
102,529,304 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1603:Chga
|
UTSW |
12 |
102,530,866 (GRCm39) |
splice site |
probably null |
|
|
R1727:Chga
|
UTSW |
12 |
102,527,696 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R1778:Chga
|
UTSW |
12 |
102,527,959 (GRCm39) |
missense |
probably benign |
|
|
R1800:Chga
|
UTSW |
12 |
102,522,164 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2071:Chga
|
UTSW |
12 |
102,529,122 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3415:Chga
|
UTSW |
12 |
102,529,043 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3696:Chga
|
UTSW |
12 |
102,527,724 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5022:Chga
|
UTSW |
12 |
102,529,096 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5507:Chga
|
UTSW |
12 |
102,528,868 (GRCm39) |
missense |
probably benign |
0.39 |
|
R5959:Chga
|
UTSW |
12 |
102,528,114 (GRCm39) |
missense |
probably benign |
|
|
R7338:Chga
|
UTSW |
12 |
102,529,100 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7410:Chga
|
UTSW |
12 |
102,528,866 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7694:Chga
|
UTSW |
12 |
102,527,606 (GRCm39) |
missense |
probably benign |
0.05 |
|
R8084:Chga
|
UTSW |
12 |
102,528,328 (GRCm39) |
missense |
probably benign |
0.29 |
|
R8211:Chga
|
UTSW |
12 |
102,527,678 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R8505:Chga
|
UTSW |
12 |
102,528,004 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8878:Chga
|
UTSW |
12 |
102,527,720 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R9043:Chga
|
UTSW |
12 |
102,529,054 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R9139:Chga
|
UTSW |
12 |
102,528,144 (GRCm39) |
missense |
probably benign |
0.45 |
|
R9346:Chga
|
UTSW |
12 |
102,525,548 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9764:Chga
|
UTSW |
12 |
102,525,613 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
RF001:Chga
|
UTSW |
12 |
102,527,682 (GRCm39) |
small insertion |
probably benign |
|
|
RF002:Chga
|
UTSW |
12 |
102,527,680 (GRCm39) |
small insertion |
probably benign |
|
|
RF006:Chga
|
UTSW |
12 |
102,527,671 (GRCm39) |
small insertion |
probably benign |
|
|
RF009:Chga
|
UTSW |
12 |
102,527,679 (GRCm39) |
small insertion |
probably benign |
|
|
RF010:Chga
|
UTSW |
12 |
102,527,662 (GRCm39) |
small insertion |
probably benign |
|
|
RF014:Chga
|
UTSW |
12 |
102,527,664 (GRCm39) |
small insertion |
probably benign |
|
|
RF014:Chga
|
UTSW |
12 |
102,527,652 (GRCm39) |
small insertion |
probably benign |
|
|
RF015:Chga
|
UTSW |
12 |
102,527,679 (GRCm39) |
small insertion |
probably benign |
|
|
RF022:Chga
|
UTSW |
12 |
102,527,679 (GRCm39) |
small insertion |
probably benign |
|
|
RF033:Chga
|
UTSW |
12 |
102,527,655 (GRCm39) |
small insertion |
probably benign |
|
|
RF035:Chga
|
UTSW |
12 |
102,527,686 (GRCm39) |
small insertion |
probably benign |
|
|
RF044:Chga
|
UTSW |
12 |
102,527,655 (GRCm39) |
small insertion |
probably benign |
|
|
RF048:Chga
|
UTSW |
12 |
102,527,680 (GRCm39) |
small insertion |
probably benign |
|
|
RF048:Chga
|
UTSW |
12 |
102,527,662 (GRCm39) |
small insertion |
probably benign |
|
|
RF049:Chga
|
UTSW |
12 |
102,527,652 (GRCm39) |
small insertion |
probably benign |
|
|
RF052:Chga
|
UTSW |
12 |
102,527,675 (GRCm39) |
small insertion |
probably benign |
|
|
RF054:Chga
|
UTSW |
12 |
102,527,682 (GRCm39) |
small insertion |
probably benign |
|
|
RF056:Chga
|
UTSW |
12 |
102,527,683 (GRCm39) |
small insertion |
probably benign |
|
|
RF058:Chga
|
UTSW |
12 |
102,527,675 (GRCm39) |
small insertion |
probably benign |
|
|
RF060:Chga
|
UTSW |
12 |
102,527,683 (GRCm39) |
small insertion |
probably benign |
|
|
RF061:Chga
|
UTSW |
12 |
102,527,686 (GRCm39) |
small insertion |
probably benign |
|
|
RF061:Chga
|
UTSW |
12 |
102,527,672 (GRCm39) |
small insertion |
probably benign |
|
|
| Posted On |
2015-04-16 |
Incidental Mutation