Mutagenetix > Incidental Mutation

Incidental Mutation 'R7319:Trim38'

568077

Institutional Source

Beutler Lab

Gene Symbol

Trim38

Ensembl Gene

ENSMUSG00000064140

Gene Name

tripartite motif-containing 38

Synonyms

LOC214158

MMRRC Submission

045415-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.053) question?

Stock #

R7319 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

23962483-23975721 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 23975384 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 441 (T441I)

Ref Sequence

ENSEMBL: ENSMUSP00000073709 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074067] [ENSMUST00000223911] [ENSMUST00000226039]

AlphaFold

Q5SZ99

Predicted Effect

probably damaging
Transcript: ENSMUST00000074067
AA Change: T441I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000073709
Gene: ENSMUSG00000064140
AA Change: T441I

Domain	Start	End	E-Value	Type
RING	16	61	8.95e-7	SMART
BBOX	90	131	4.34e-5	SMART
coiled coil region	202	249	N/A	INTRINSIC
PRY	293	347	2.31e-9	SMART
SPRY	348	469	6.71e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000223911

Predicted Effect

probably damaging
Transcript: ENSMUST00000226039
AA Change: T441I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

96% (79/82)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the tripartite motif (TRIM) family. The encoded protein contains a RING-type zinc finger, B box-type zinc finger and SPRY domain. The function of this protein has not been identified. A pseudogene of this gene is located on the long arm of chromosome 4. [provided by RefSeq, Jul 2012]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased poly(I:C) and LPS-induced IFN-beta, TNFalpha and IL6 with increased induced mortality induced by poly(I:C), LPS or S. typhimurium infection, [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9930012K11Rik	A	T	14: 70,393,635 (GRCm39)	I287N	probably benign	Het
Aco2	G	T	15: 81,787,820 (GRCm39)	E223D	probably damaging	Het
Acsf3	T	A	8: 123,539,770 (GRCm39)	I466N	probably damaging	Het
Albfm1	G	A	5: 90,719,625 (GRCm39)		probably null	Het
Aox3	T	A	1: 58,191,761 (GRCm39)	F438I	probably benign	Het
Arhgap33	T	C	7: 30,225,794 (GRCm39)	T591A	probably benign	Het
Ash1l	C	T	3: 88,888,694 (GRCm39)	A191V	probably benign	Het
Btg2	T	C	1: 134,006,779 (GRCm39)	K5E	probably benign	Het
C1galt1	T	A	6: 7,871,150 (GRCm39)	Y329N	probably damaging	Het
Cacna1h	A	G	17: 25,608,435 (GRCm39)	I824T	possibly damaging	Het
Carmil3	A	G	14: 55,731,817 (GRCm39)	I182V	probably benign	Het
Ccdc150	T	A	1: 54,302,496 (GRCm39)		probably null	Het
Chek1	T	A	9: 36,633,939 (GRCm39)	R129W	probably damaging	Het
Chrna6	A	G	8: 27,896,815 (GRCm39)	M354T	possibly damaging	Het
Cpq	A	G	15: 33,250,185 (GRCm39)	T181A	probably benign	Het
Csmd2	A	T	4: 128,287,472 (GRCm39)	Y1069F		Het
Defb28	T	A	2: 152,361,974 (GRCm39)	C45S	possibly damaging	Het
Dnah1	A	G	14: 31,018,551 (GRCm39)	Y1360H	probably benign	Het
Dnah7c	T	C	1: 46,823,608 (GRCm39)	V3749A	possibly damaging	Het
Dnah7c	T	A	1: 46,819,935 (GRCm39)	D3728E	probably benign	Het
Dym	G	A	18: 75,196,245 (GRCm39)		probably null	Het
Dync2i2	G	A	2: 29,928,341 (GRCm39)	P95L	probably benign	Het
Dzip3	A	G	16: 48,747,903 (GRCm39)		probably null	Het
Eef1akmt4	A	G	16: 20,436,666 (GRCm39)	K163E	probably benign	Het
Fbrs	A	G	7: 127,081,985 (GRCm39)	T242A	possibly damaging	Het
Fgfr3	G	A	5: 33,885,146 (GRCm39)	V87M	possibly damaging	Het
Fst	A	T	13: 114,595,068 (GRCm39)	C19S	probably benign	Het
Gm7276	G	A	18: 77,273,216 (GRCm39)	R173W	unknown	Het
Gm9195	G	A	14: 72,697,929 (GRCm39)	H1284Y	probably benign	Het
Herc6	C	A	6: 57,581,074 (GRCm39)	T258K	probably damaging	Het
Hip1r	A	G	5: 124,137,174 (GRCm39)	Y678C	probably damaging	Het
Ifne	A	T	4: 88,798,243 (GRCm39)	N58K	probably damaging	Het
Ighv1-26	A	T	12: 114,752,163 (GRCm39)	H60Q	possibly damaging	Het
Ints1	A	G	5: 139,746,520 (GRCm39)	F1276L	probably damaging	Het
Itprid2	A	T	2: 79,466,416 (GRCm39)	D82V	probably damaging	Het
Kcnc4	T	A	3: 107,366,100 (GRCm39)	E36V	probably benign	Het
Kcnq2	C	T	2: 180,750,895 (GRCm39)	G315S	probably damaging	Het
Kdm4c	G	A	4: 74,255,200 (GRCm39)	V585M	probably damaging	Het
Klhl26	C	T	8: 70,905,592 (GRCm39)	R106H	probably damaging	Het
Kmo	T	C	1: 175,481,221 (GRCm39)	F313S	probably damaging	Het
Lmtk3	T	A	7: 45,443,740 (GRCm39)	S808T	unknown	Het
Lrch3	A	G	16: 32,815,363 (GRCm39)	T585A	probably benign	Het
Lrch4	T	A	5: 137,637,977 (GRCm39)	H86Q		Het
Map3k20	A	G	2: 72,195,062 (GRCm39)	D113G	probably damaging	Het
Mbd3l1	T	C	9: 18,396,417 (GRCm39)	S181P	probably benign	Het
Mccc2	T	C	13: 100,104,241 (GRCm39)	T303A	probably benign	Het
Med27	A	G	2: 29,303,490 (GRCm39)	R147G	possibly damaging	Het
Mrps5	T	A	2: 127,437,762 (GRCm39)	S196R	possibly damaging	Het
Muc21	GGGGTGGGCATAGATCCTGAGGCAGAGCTGGATGCAGTGGTGGTCAGGGTGGG	GGGGTGGG	17: 35,932,935 (GRCm39)		probably benign	Het
Myo16	A	T	8: 10,526,185 (GRCm39)		probably null	Het
Nudt2	A	T	4: 41,477,575 (GRCm39)	M19L	probably benign	Het
Pcdha11	C	T	18: 37,146,245 (GRCm39)	P779S	probably benign	Het
Phykpl	A	G	11: 51,489,530 (GRCm39)	T379A	probably benign	Het
Plekha8	A	C	6: 54,601,206 (GRCm39)	M270L	probably benign	Het
Plekhg5	A	G	4: 152,192,885 (GRCm39)	H593R	probably benign	Het
Polr2a	T	C	11: 69,637,196 (GRCm39)	N293S	possibly damaging	Het
Pramel32	G	A	4: 88,548,184 (GRCm39)	P74S	probably benign	Het
Prex2	T	A	1: 11,232,532 (GRCm39)	N866K	probably benign	Het
Psme4	A	T	11: 30,757,790 (GRCm39)	I308L	probably benign	Het
Ptprb	T	C	10: 116,177,309 (GRCm39)	V1003A	probably benign	Het
Rbbp8	T	A	18: 11,865,269 (GRCm39)	D719E	probably damaging	Het
Rnaset2b	A	T	17: 7,259,166 (GRCm39)	D144V	probably benign	Het
Senp6	T	G	9: 80,033,481 (GRCm39)	D662E	probably damaging	Het
Serpinb3c	T	C	1: 107,200,817 (GRCm39)	N200S	possibly damaging	Het
Serpinb9g	C	G	13: 33,672,543 (GRCm39)	Y113*	probably null	Het
Sgf29	T	C	7: 126,270,821 (GRCm39)	I134T	probably benign	Het
Sh3bp4	T	G	1: 89,080,824 (GRCm39)		probably null	Het
Stab1	G	A	14: 30,862,783 (GRCm39)	L2243F	probably damaging	Het
Sympk	T	C	7: 18,769,770 (GRCm39)	V149A	probably benign	Het
Syt3	C	T	7: 44,041,953 (GRCm39)	Q271*	probably null	Het
Tas2r109	A	G	6: 132,957,663 (GRCm39)	I89T	probably benign	Het
Tgif1	A	G	17: 71,151,847 (GRCm39)	S255P	probably damaging	Het
Tm9sf1	G	A	14: 55,875,432 (GRCm39)		probably benign	Het
Tnf	A	G	17: 35,419,347 (GRCm39)	F161S	possibly damaging	Het
Topaz1	T	A	9: 122,579,428 (GRCm39)	S779R	possibly damaging	Het
Topors	A	G	4: 40,260,540 (GRCm39)	S915P	unknown	Het
Tpm4	C	T	8: 72,900,321 (GRCm39)	L161F	probably damaging	Het
Trpv1	A	G	11: 73,141,620 (GRCm39)	M548V	probably benign	Het
Vmn2r68	T	A	7: 84,883,042 (GRCm39)	T237S	probably benign	Het
Zc3hav1	A	G	6: 38,309,209 (GRCm39)	S538P	probably benign	Het
Zfp541	C	T	7: 15,813,294 (GRCm39)	T649I	probably benign	Het

Other mutations in Trim38

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00915:Trim38	APN	13	23,975,015 (GRCm39)	missense	possibly damaging	0.91
IGL01592:Trim38	APN	13	23,975,410 (GRCm39)	missense	possibly damaging	0.85
IGL02339:Trim38	APN	13	23,972,213 (GRCm39)	missense	probably damaging	1.00
IGL03062:Trim38	APN	13	23,966,946 (GRCm39)	missense	probably damaging	1.00
IGL03278:Trim38	APN	13	23,974,979 (GRCm39)	missense	possibly damaging	0.65
R0630:Trim38	UTSW	13	23,975,115 (GRCm39)	nonsense	probably null
R1263:Trim38	UTSW	13	23,975,117 (GRCm39)	missense	probably damaging	1.00
R1560:Trim38	UTSW	13	23,966,685 (GRCm39)	missense	probably benign	0.02
R1978:Trim38	UTSW	13	23,975,081 (GRCm39)	missense	probably damaging	1.00
R4407:Trim38	UTSW	13	23,975,474 (GRCm39)	missense	probably benign	0.04
R4462:Trim38	UTSW	13	23,975,435 (GRCm39)	missense	probably null	1.00
R4649:Trim38	UTSW	13	23,966,952 (GRCm39)	missense	probably damaging	1.00
R4651:Trim38	UTSW	13	23,966,952 (GRCm39)	missense	probably damaging	1.00
R4653:Trim38	UTSW	13	23,966,952 (GRCm39)	missense	probably damaging	1.00
R4816:Trim38	UTSW	13	23,972,264 (GRCm39)	missense	probably damaging	1.00
R4970:Trim38	UTSW	13	23,975,312 (GRCm39)	missense	probably damaging	0.98
R5946:Trim38	UTSW	13	23,966,717 (GRCm39)	missense	probably benign	0.04
R6538:Trim38	UTSW	13	23,969,932 (GRCm39)	missense	probably damaging	0.97
R6974:Trim38	UTSW	13	23,973,502 (GRCm39)	missense	probably benign	0.05
R7227:Trim38	UTSW	13	23,969,946 (GRCm39)	missense	possibly damaging	0.88
R7425:Trim38	UTSW	13	23,972,365 (GRCm39)	missense	probably benign	0.02
R8243:Trim38	UTSW	13	23,975,378 (GRCm39)	missense	probably damaging	1.00
R8965:Trim38	UTSW	13	23,975,006 (GRCm39)	missense	possibly damaging	0.65
R9354:Trim38	UTSW	13	23,969,875 (GRCm39)	missense	probably benign	0.09
R9573:Trim38	UTSW	13	23,966,688 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- CAACCAGTTGGGATTTGGGAG -3'
(R):5'- GCAGTGAAGATAAAGTTTCTGCC -3'

Sequencing Primer
(F):5'- TGCACAGGGGCTTTAACATG -3'
(R):5'- AGTGAAGATAAAGTTTCTGCCTTGTG -3'

Posted On

2019-06-26