Mutagenetix > Incidental Mutation

Incidental Mutation 'R7522:Cnga4'

582719

Institutional Source

Beutler Lab

Gene Symbol

Cnga4

Ensembl Gene

ENSMUSG00000030897

Gene Name

cyclic nucleotide gated channel alpha 4

Synonyms

MMRRC Submission

045594-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.067) question?

Stock #

R7522 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

105053775-105057949 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 105055195 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 260 (T260A)

Ref Sequence

ENSEMBL: ENSMUSP00000033187 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033187] [ENSMUST00000210344]

AlphaFold

Q3UW12

Predicted Effect

probably damaging
Transcript: ENSMUST00000033187
AA Change: T260A

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000033187
Gene: ENSMUSG00000030897
AA Change: T260A

Domain	Start	End	E-Value	Type
Pfam:Ion_trans	34	276	1.1e-28	PFAM
cNMP	348	472	1.54e-25	SMART
low complexity region	500	508	N/A	INTRINSIC
low complexity region	514	523	N/A	INTRINSIC
low complexity region	540	557	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000210344
AA Change: T157A

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

97% (75/77)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] CNGA4 is a modulatory subunit of vertebrate cyclic nucleotide-gated membrane channels that transduce odorant signals (Munger et al., 2001 [PubMed 11739959]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Inactivation of this gene results in odor adaptation defects. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A030014E15Rik	G	T	1: 82,902,949 (GRCm39)	C82F	unknown	Het
Adam21	G	C	12: 81,605,722 (GRCm39)	T680R	possibly damaging	Het
Adgrf4	A	C	17: 42,980,675 (GRCm39)	Y137D	probably benign	Het
Ago3	T	C	4: 126,257,600 (GRCm39)	K477R	probably benign	Het
Ahnak	T	A	19: 8,979,686 (GRCm39)	D323E	probably benign	Het
Amph	A	G	13: 19,270,715 (GRCm39)	D108G	probably damaging	Het
Ankrd10	A	T	8: 11,682,910 (GRCm39)	C106S	probably damaging	Het
Bmp5	A	T	9: 75,683,384 (GRCm39)	T4S	probably benign	Het
Brix1	G	A	15: 10,476,676 (GRCm39)	R267C	probably damaging	Het
Calcrl	G	A	2: 84,203,708 (GRCm39)	S24L	probably benign	Het
Ccdc40	T	G	11: 119,123,047 (GRCm39)	I213R	possibly damaging	Het
Cd300lg	A	G	11: 101,945,028 (GRCm39)	I413V	probably benign	Het
Cdh3	G	A	8: 107,268,005 (GRCm39)	D347N	probably damaging	Het
Clcn3	T	C	8: 61,394,446 (GRCm39)	T55A	probably benign	Het
Cpne8	G	T	15: 90,486,022 (GRCm39)	P147Q	probably benign	Het
Cpsf6	A	G	10: 117,203,734 (GRCm39)	Y74H	unknown	Het
Cryl1	A	T	14: 57,513,428 (GRCm39)	S264R	probably benign	Het
Cyp39a1	C	T	17: 43,978,370 (GRCm39)		probably benign	Het
Cyp4f39	T	C	17: 32,705,946 (GRCm39)	S346P	probably damaging	Het
Cyria	A	G	12: 12,408,057 (GRCm39)	T28A	possibly damaging	Het
Ddhd1	G	A	14: 45,895,104 (GRCm39)	A122V	possibly damaging	Het
Dnmt1	C	A	9: 20,831,498 (GRCm39)	C662F	probably damaging	Het
E2f6	G	A	12: 16,872,125 (GRCm39)	G190S	probably benign	Het
Esp34	A	T	17: 38,870,432 (GRCm39)	I109F	possibly damaging	Het
Espl1	A	T	15: 102,213,486 (GRCm39)	D604V	probably damaging	Het
Exo1	T	C	1: 175,728,870 (GRCm39)	C645R	probably benign	Het
Fah	A	G	7: 84,246,282 (GRCm39)	V189A	probably benign	Het
Fam184b	A	C	5: 45,688,093 (GRCm39)	Y939D	probably damaging	Het
Fchsd2	T	A	7: 100,908,829 (GRCm39)	L410*	probably null	Het
Gak	A	T	5: 108,739,065 (GRCm39)	I665N	possibly damaging	Het
Galnt9	A	G	5: 110,743,705 (GRCm39)		probably null	Het
Gcg	T	C	2: 62,306,103 (GRCm39)	R165G	probably benign	Het
Hexd	T	C	11: 121,108,923 (GRCm39)	V214A	possibly damaging	Het
Hoxb3	A	T	11: 96,235,507 (GRCm39)	S145C	probably damaging	Het
Il18	A	G	9: 50,486,640 (GRCm39)	Y23C	probably damaging	Het
Itgav	A	T	2: 83,632,373 (GRCm39)	I954F	probably benign	Het
Kcna4	A	G	2: 107,126,600 (GRCm39)	R445G	probably damaging	Het
Kyat3	T	A	3: 142,440,305 (GRCm39)	L343Q	probably damaging	Het
Lgals4	A	T	7: 28,537,117 (GRCm39)	D139V	possibly damaging	Het
Lrp3	C	T	7: 34,903,755 (GRCm39)	G197D	probably damaging	Het
Lyst	T	A	13: 13,821,668 (GRCm39)	C1347*	probably null	Het
Man2a2	G	C	7: 80,018,613 (GRCm39)	A82G	probably benign	Het
Map3k4	T	C	17: 12,480,219 (GRCm39)	Q661R	probably benign	Het
Marcks	A	C	10: 37,012,577 (GRCm39)	F153V	unknown	Het
Mocs1	T	C	17: 49,742,292 (GRCm39)		probably null	Het
Naa60	A	G	16: 3,719,768 (GRCm39)	T232A	probably benign	Het
Oosp1	A	T	19: 11,666,065 (GRCm39)	I75N	probably benign	Het
Opn3	A	G	1: 175,493,189 (GRCm39)	V125A	probably benign	Het
Or2ag18	A	G	7: 106,404,994 (GRCm39)	V225A	probably damaging	Het
Or2f1	T	A	6: 42,721,568 (GRCm39)	I199N	probably damaging	Het
Or4c102	A	G	2: 88,423,005 (GRCm39)	T286A	possibly damaging	Het
Or7g27	T	A	9: 19,250,294 (GRCm39)	C179*	probably null	Het
Palb2	T	C	7: 121,712,501 (GRCm39)	T947A	probably damaging	Het
Pde5a	C	T	3: 122,634,648 (GRCm39)	R730*	probably null	Het
Plcl1	T	C	1: 55,735,523 (GRCm39)	I288T	probably benign	Het
Plxnb2	A	G	15: 89,045,977 (GRCm39)	I966T	probably benign	Het
Prkcz	T	C	4: 155,355,742 (GRCm39)	E400G	probably damaging	Het
Prpf8	A	G	11: 75,400,102 (GRCm39)	D2332G	possibly damaging	Het
Ptgds	T	G	2: 25,357,920 (GRCm39)	T154P	probably benign	Het
Rel	T	C	11: 23,720,676 (GRCm39)		probably null	Het
Rxylt1	A	G	10: 121,917,344 (GRCm39)	W390R	probably damaging	Het
Serpinb1c	T	A	13: 33,066,200 (GRCm39)	K248N	probably benign	Het
Shkbp1	A	C	7: 27,046,583 (GRCm39)	W394G	possibly damaging	Het
Slc47a2	A	G	11: 61,193,076 (GRCm39)	V559A	probably benign	Het
Sox6	A	T	7: 115,400,813 (GRCm39)	F10I	probably damaging	Het
Stkld1	T	C	2: 26,837,259 (GRCm39)	V303A	probably benign	Het
Styk1	T	A	6: 131,289,803 (GRCm39)		probably null	Het
Tet1	T	C	10: 62,654,762 (GRCm39)	T1574A	possibly damaging	Het
Tkt	A	T	14: 30,290,180 (GRCm39)	I270F	possibly damaging	Het
Trak1	A	G	9: 121,271,777 (GRCm39)	E166G	probably damaging	Het
Tsc2	A	T	17: 24,849,939 (GRCm39)	I58N	probably damaging	Het
Uhmk1	T	A	1: 170,042,809 (GRCm39)	M1L	probably benign	Het
Usp50	T	C	2: 126,625,146 (GRCm39)	Y21C	probably damaging	Het
Vmn1r180	C	G	7: 23,652,685 (GRCm39)	P283A	probably damaging	Het
Vmn1r83	A	G	7: 12,055,505 (GRCm39)	M184T	possibly damaging	Het
Vmn2r109	A	G	17: 20,774,665 (GRCm39)	I230T	probably benign	Het

Other mutations in Cnga4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01413:Cnga4	APN	7	105,054,169 (GRCm39)	missense	probably benign
IGL01418:Cnga4	APN	7	105,054,169 (GRCm39)	missense	probably benign
IGL02450:Cnga4	APN	7	105,054,955 (GRCm39)	missense	probably damaging	1.00
IGL02533:Cnga4	APN	7	105,057,168 (GRCm39)	missense	probably damaging	0.97
BB001:Cnga4	UTSW	7	105,057,028 (GRCm39)	missense	probably benign	0.00
BB011:Cnga4	UTSW	7	105,057,028 (GRCm39)	missense	probably benign	0.00
IGL03052:Cnga4	UTSW	7	105,053,932 (GRCm39)	missense	probably benign	0.21
R0020:Cnga4	UTSW	7	105,054,884 (GRCm39)	missense	probably damaging	1.00
R0135:Cnga4	UTSW	7	105,056,055 (GRCm39)	missense	probably damaging	1.00
R0281:Cnga4	UTSW	7	105,056,875 (GRCm39)	missense	probably damaging	1.00
R0506:Cnga4	UTSW	7	105,056,947 (GRCm39)	missense	probably damaging	1.00
R0599:Cnga4	UTSW	7	105,055,025 (GRCm39)	missense	probably damaging	1.00
R0646:Cnga4	UTSW	7	105,054,182 (GRCm39)	missense	possibly damaging	0.47
R0980:Cnga4	UTSW	7	105,057,213 (GRCm39)	missense	probably damaging	1.00
R1727:Cnga4	UTSW	7	105,054,961 (GRCm39)	missense	probably damaging	1.00
R3415:Cnga4	UTSW	7	105,056,325 (GRCm39)	missense	probably damaging	1.00
R3768:Cnga4	UTSW	7	105,056,887 (GRCm39)	missense	probably damaging	1.00
R4559:Cnga4	UTSW	7	105,054,892 (GRCm39)	missense	probably damaging	1.00
R4852:Cnga4	UTSW	7	105,054,937 (GRCm39)	missense	probably benign	0.01
R5081:Cnga4	UTSW	7	105,056,232 (GRCm39)	missense	probably benign	0.20
R6232:Cnga4	UTSW	7	105,056,906 (GRCm39)	nonsense	probably null
R6234:Cnga4	UTSW	7	105,056,906 (GRCm39)	nonsense	probably null
R6235:Cnga4	UTSW	7	105,056,906 (GRCm39)	nonsense	probably null
R6824:Cnga4	UTSW	7	105,056,036 (GRCm39)	missense	probably benign
R6866:Cnga4	UTSW	7	105,056,952 (GRCm39)	missense	possibly damaging	0.95
R6997:Cnga4	UTSW	7	105,056,190 (GRCm39)	missense	probably damaging	1.00
R7019:Cnga4	UTSW	7	105,055,036 (GRCm39)	missense	probably benign	0.00
R7273:Cnga4	UTSW	7	105,056,172 (GRCm39)	missense	probably damaging	1.00
R7509:Cnga4	UTSW	7	105,056,097 (GRCm39)	missense	probably benign	0.32
R7545:Cnga4	UTSW	7	105,056,286 (GRCm39)	missense	probably damaging	1.00
R7873:Cnga4	UTSW	7	105,056,249 (GRCm39)	missense	probably damaging	0.99
R7924:Cnga4	UTSW	7	105,057,028 (GRCm39)	missense	probably benign	0.00
R7969:Cnga4	UTSW	7	105,055,253 (GRCm39)	missense	probably damaging	1.00
R8024:Cnga4	UTSW	7	105,056,042 (GRCm39)	missense	probably damaging	1.00
R8284:Cnga4	UTSW	7	105,057,239 (GRCm39)	missense	probably benign	0.17
R8743:Cnga4	UTSW	7	105,057,220 (GRCm39)	missense	probably benign
R9553:Cnga4	UTSW	7	105,054,977 (GRCm39)	missense	probably damaging	1.00
X0025:Cnga4	UTSW	7	105,054,427 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TGGAACAGCTGCTTATACTTCG -3'
(R):5'- ACTCAGGTCCTCAGGCATAC -3'

Sequencing Primer
(F):5'- CGGGATGCATGGGTATACC -3'
(R):5'- AGGTCCTCAGGCATACCTCCC -3'

Posted On

2019-10-17