Incidental Mutation 'R7902:Sars2'
| ID |
610041 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Sars2
|
| Ensembl Gene |
ENSMUSG00000070699 |
| Gene Name |
seryl-aminoacyl-tRNA synthetase 2 |
| Synonyms |
D7Ertd353e, 2410015F05Rik |
| MMRRC Submission |
045954-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.868)
|
| Stock # |
R7902 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
28441417-28453296 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 28441628 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 63
(V63A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000092216
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000032818]
[ENSMUST00000056078]
[ENSMUST00000094632]
[ENSMUST00000108278]
[ENSMUST00000108279]
[ENSMUST00000165004]
[ENSMUST00000167118]
[ENSMUST00000171183]
[ENSMUST00000207877]
|
| AlphaFold |
Q9JJL8 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000032818
|
| SMART Domains |
Protein: ENSMUSP00000032818
Gene: ENSMUSG00000030598
| Domain | Start | End | E-Value | Type |
|---|
|
FBOX
|
21 |
62 |
7.7e-6 |
SMART |
|
low complexity region
|
83 |
92 |
N/A |
INTRINSIC |
|
FBA
|
101 |
283 |
7.76e-96 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000056078
|
| SMART Domains |
Protein: ENSMUSP00000062066
Gene: ENSMUSG00000045948
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribosom_S12_S23
|
31 |
139 |
2.4e-36 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000094632
AA Change: V63A
PolyPhen 2
Score 0.290 (Sensitivity: 0.91; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000092216
Gene: ENSMUSG00000070699
AA Change: V63A
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Seryl_tRNA_N
|
58 |
174 |
3.8e-8 |
PFAM |
|
Pfam:tRNA-synt_2b
|
284 |
468 |
5.2e-24 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000108278
|
| SMART Domains |
Protein: ENSMUSP00000103913
Gene: ENSMUSG00000030598
| Domain | Start | End | E-Value | Type |
|---|
|
FBOX
|
21 |
62 |
7.7e-6 |
SMART |
|
low complexity region
|
83 |
92 |
N/A |
INTRINSIC |
|
FBA
|
101 |
283 |
7.76e-96 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000108279
|
| SMART Domains |
Protein: ENSMUSP00000103914
Gene: ENSMUSG00000030598
| Domain | Start | End | E-Value | Type |
|---|
|
FBOX
|
21 |
62 |
7.7e-6 |
SMART |
|
low complexity region
|
83 |
92 |
N/A |
INTRINSIC |
|
FBA
|
101 |
242 |
1.34e-49 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000165004
|
| SMART Domains |
Protein: ENSMUSP00000129492
Gene: ENSMUSG00000045948
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribosom_S12_S23
|
23 |
125 |
3e-37 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000167118
|
| SMART Domains |
Protein: ENSMUSP00000130422
Gene: ENSMUSG00000030598
| Domain | Start | End | E-Value | Type |
|---|
|
FBOX
|
21 |
62 |
7.7e-6 |
SMART |
|
low complexity region
|
83 |
92 |
N/A |
INTRINSIC |
|
FBA
|
101 |
283 |
7.76e-96 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000171183
|
| SMART Domains |
Protein: ENSMUSP00000132443
Gene: ENSMUSG00000045948
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribosom_S12_S23
|
31 |
139 |
2.4e-36 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000207877
AA Change: V63A
PolyPhen 2
Score 0.488 (Sensitivity: 0.88; Specificity: 0.90)
|
| Meta Mutation Damage Score |
0.0846 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.1%
|
| Validation Efficiency |
97% (34/35) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the mitochondrial seryl-tRNA synthethase precursor, a member of the class II tRNA synthetase family. The mature enzyme catalyzes the ligation of Serine to tRNA(Ser) and participates in the biosynthesis of selenocysteinyl-tRNA(sec) in mitochondria. The enzyme contains an N-terminal tRNA binding domain and a core catalytic domain. It functions in a homodimeric form, which is stabilized by tRNA binding. This gene is regulated by a bidirectional promoter that also controls the expression of mitochondrial ribosomal protein S12. Both genes are within the critical interval for the autosomal dominant deafness locus DFNA4 and might be linked to this disease. Multiple transcript variants encoding different isoforms have been identified for this gene. [provided by RefSeq, Mar 2009]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A530084C06Rik |
G |
T |
13: 31,742,978 (GRCm39) |
R92S |
unknown |
Het |
| Adamts14 |
T |
C |
10: 61,041,176 (GRCm39) |
S842G |
possibly damaging |
Het |
| C1ra |
G |
A |
6: 124,494,684 (GRCm39) |
E316K |
probably benign |
Het |
| Card6 |
TTGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGCGGATGAGAGGGCTTAGCATGGGAGGACTG |
TTGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGCGGATGAGAGGGCTTAGCATGGGAGGACTG |
15: 5,128,173 (GRCm39) |
|
probably benign |
Het |
| Ccdc7a |
A |
G |
8: 129,562,654 (GRCm39) |
I1108T |
possibly damaging |
Het |
| Col12a1 |
T |
A |
9: 79,548,863 (GRCm39) |
M2161L |
probably benign |
Het |
| Col14a1 |
T |
C |
15: 55,364,832 (GRCm39) |
I1647T |
probably benign |
Het |
| Defb26 |
A |
T |
2: 152,350,156 (GRCm39) |
C41* |
probably null |
Het |
| Dennd3 |
T |
G |
15: 73,439,964 (GRCm39) |
|
probably benign |
Het |
| Edem1 |
C |
T |
6: 108,831,338 (GRCm39) |
R600W |
possibly damaging |
Het |
| F13a1 |
C |
A |
13: 37,172,913 (GRCm39) |
G156W |
probably damaging |
Het |
| Foxk2 |
A |
G |
11: 121,190,553 (GRCm39) |
T565A |
probably benign |
Het |
| Fsip2 |
A |
T |
2: 82,808,168 (GRCm39) |
I1496F |
possibly damaging |
Het |
| Fyb1 |
T |
C |
15: 6,690,197 (GRCm39) |
|
probably null |
Het |
| Gapdhs |
T |
C |
7: 30,436,146 (GRCm39) |
Y148C |
probably damaging |
Het |
| H1f3 |
T |
C |
13: 23,739,505 (GRCm39) |
I81T |
probably damaging |
Het |
| Hddc2 |
A |
T |
10: 31,192,289 (GRCm39) |
R64S |
probably damaging |
Het |
| Hddc2 |
T |
A |
10: 31,196,338 (GRCm39) |
|
probably null |
Het |
| Klk10 |
T |
A |
7: 43,432,942 (GRCm39) |
S113T |
probably benign |
Het |
| Lin7a |
T |
C |
10: 107,159,843 (GRCm39) |
S52P |
possibly damaging |
Het |
| Nbeal1 |
A |
T |
1: 60,331,029 (GRCm39) |
I2213L |
probably damaging |
Het |
| Nbeal2 |
T |
C |
9: 110,466,615 (GRCm39) |
T763A |
probably benign |
Het |
| Nlrp4a |
T |
A |
7: 26,149,482 (GRCm39) |
I363N |
possibly damaging |
Het |
| Oat |
C |
T |
7: 132,161,393 (GRCm39) |
V381I |
probably benign |
Het |
| Or52n2c |
A |
G |
7: 104,574,557 (GRCm39) |
L138P |
probably damaging |
Het |
| Plpp2 |
A |
T |
10: 79,363,378 (GRCm39) |
I207N |
possibly damaging |
Het |
| Rps6ka4 |
T |
C |
19: 6,808,679 (GRCm39) |
E522G |
possibly damaging |
Het |
| Sgf29 |
C |
T |
7: 126,271,350 (GRCm39) |
R209C |
probably damaging |
Het |
| Sptbn1 |
G |
A |
11: 30,086,048 (GRCm39) |
A1220V |
probably damaging |
Het |
| Taf4 |
G |
A |
2: 179,573,822 (GRCm39) |
T682M |
probably damaging |
Het |
| Tnrc18 |
T |
C |
5: 142,757,902 (GRCm39) |
E1055G |
|
Het |
| Vmn1r158 |
A |
T |
7: 22,489,433 (GRCm39) |
C259S |
possibly damaging |
Het |
| Vmn2r120 |
T |
G |
17: 57,816,244 (GRCm39) |
I704L |
possibly damaging |
Het |
| Vwa8 |
A |
G |
14: 79,329,731 (GRCm39) |
S1188G |
probably benign |
Het |
| Zfp12 |
A |
G |
5: 143,231,535 (GRCm39) |
K653E |
probably damaging |
Het |
| Zfp933 |
T |
A |
4: 147,911,058 (GRCm39) |
R179S |
probably damaging |
Het |
| Zfp937 |
A |
T |
2: 150,080,681 (GRCm39) |
H237L |
probably damaging |
Het |
| Zkscan5 |
A |
C |
5: 145,157,676 (GRCm39) |
H726P |
probably damaging |
Het |
|
| Other mutations in Sars2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00907:Sars2
|
APN |
7 |
28,452,848 (GRCm39) |
unclassified |
probably benign |
|
|
IGL01376:Sars2
|
APN |
7 |
28,449,308 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01633:Sars2
|
APN |
7 |
28,446,974 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL02121:Sars2
|
APN |
7 |
28,451,950 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02488:Sars2
|
APN |
7 |
28,441,585 (GRCm39) |
nonsense |
probably null |
|
|
IGL03062:Sars2
|
APN |
7 |
28,446,206 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R1601:Sars2
|
UTSW |
7 |
28,448,396 (GRCm39) |
missense |
probably benign |
0.26 |
|
R1857:Sars2
|
UTSW |
7 |
28,449,437 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1859:Sars2
|
UTSW |
7 |
28,443,737 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2193:Sars2
|
UTSW |
7 |
28,448,422 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R2204:Sars2
|
UTSW |
7 |
28,449,099 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R4452:Sars2
|
UTSW |
7 |
28,449,518 (GRCm39) |
missense |
probably benign |
0.08 |
|
R4514:Sars2
|
UTSW |
7 |
28,441,709 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4921:Sars2
|
UTSW |
7 |
28,451,863 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5121:Sars2
|
UTSW |
7 |
28,447,333 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5434:Sars2
|
UTSW |
7 |
28,449,716 (GRCm39) |
missense |
probably null |
1.00 |
|
R5849:Sars2
|
UTSW |
7 |
28,443,683 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R6668:Sars2
|
UTSW |
7 |
28,446,429 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7123:Sars2
|
UTSW |
7 |
28,452,866 (GRCm39) |
missense |
probably benign |
0.40 |
|
R7205:Sars2
|
UTSW |
7 |
28,443,733 (GRCm39) |
missense |
probably benign |
|
|
R7677:Sars2
|
UTSW |
7 |
28,446,176 (GRCm39) |
missense |
probably benign |
0.07 |
|
R8084:Sars2
|
UTSW |
7 |
28,449,710 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8320:Sars2
|
UTSW |
7 |
28,446,293 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9057:Sars2
|
UTSW |
7 |
28,446,246 (GRCm39) |
missense |
|
|
|
R9350:Sars2
|
UTSW |
7 |
28,447,273 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9461:Sars2
|
UTSW |
7 |
28,449,438 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TTCCACTCCAAGATGGCTGC -3'
(R):5'- CATTGCCTAACTTGGGAAGGAAC -3'
Sequencing Primer
(F):5'- AAGATGGCTGCGTCCATG -3'
(R):5'- GGAACCCAAATTCCTGTTGAG -3'
|
| Posted On |
2019-12-20 |
Incidental Mutation