Mutagenetix > Incidental Mutation

Incidental Mutation 'R9013:Meis1'

685776

Institutional Source

Beutler Lab

Gene Symbol

Meis1

Ensembl Gene

ENSMUSG00000020160

Gene Name

Meis homeobox 1

Synonyms

C530044H18Rik

MMRRC Submission

068843-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9013 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

18830428-18968992 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 18966354 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 6 (D6E)

Ref Sequence

ENSEMBL: ENSMUSP00000139219 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068264] [ENSMUST00000102878] [ENSMUST00000144988] [ENSMUST00000177417] [ENSMUST00000185131]

AlphaFold

Q60954

Predicted Effect

SMART Domains

Protein: ENSMUSP00000069277
Gene: ENSMUSG00000020160
AA Change: D6E

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
low complexity region	372	385	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102878
AA Change: D6E

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000099942
Gene: ENSMUSG00000020160
AA Change: D6E

Domain	Start	End	E-Value	Type
internal_repeat_1	12	59	8.66e-5	PROSPERO
Pfam:Meis_PKNOX_N	108	192	5.5e-48	PFAM
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
internal_repeat_1	384	428	8.66e-5	PROSPERO

Predicted Effect

probably benign
Transcript: ENSMUST00000144988
AA Change: D6E

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000134969
Gene: ENSMUSG00000020160
AA Change: D6E

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
low complexity region	358	369	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000177357

Predicted Effect

probably benign
Transcript: ENSMUST00000177417
AA Change: D6E

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000135726
Gene: ENSMUSG00000020160
AA Change: D6E

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000185131
AA Change: D6E

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000139219
Gene: ENSMUSG00000020160
AA Change: D6E

Domain	Start	End	E-Value	Type
internal_repeat_1	12	59	8.66e-5	PROSPERO
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
internal_repeat_1	384	428	8.66e-5	PROSPERO

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous mutant mice die during gestation and exhibit eye, vasculature, and hematopoietic defects. Mice homozygous for a conditional allele activated in HSCs exhibit altered bone marrow cell development, altered HSC physiology and increased reactive oxygen species production. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9930012K11Rik	G	T	14: 70,394,176 (GRCm39)	L200I	probably damaging	Het
Afap1	G	A	5: 36,133,932 (GRCm39)	D456N	possibly damaging	Het
Afm	A	T	5: 90,671,594 (GRCm39)	D92V	probably damaging	Het
Ahi1	T	C	10: 20,883,658 (GRCm39)	I841T	probably benign	Het
Asb1	T	C	1: 91,480,163 (GRCm39)		probably null	Het
Astn1	A	T	1: 158,348,070 (GRCm39)	I507F	probably damaging	Het
Astn2	A	G	4: 65,910,584 (GRCm39)	M468T	probably benign	Het
C030006K11Rik	T	C	15: 76,608,004 (GRCm39)	S5G	probably benign	Het
C9	A	T	15: 6,516,193 (GRCm39)	D332V	probably damaging	Het
Cacna1c	A	T	6: 118,719,266 (GRCm39)	S423T	probably damaging	Het
Cbx8	T	C	11: 118,929,649 (GRCm39)	I315V	possibly damaging	Het
Ccdc50	T	A	16: 27,228,106 (GRCm39)	I91N	probably damaging	Het
Col4a1	T	A	8: 11,272,270 (GRCm39)	I707L	probably benign	Het
Cyc1	T	C	15: 76,229,019 (GRCm39)	V154A	possibly damaging	Het
Cyp4f40	A	T	17: 32,890,173 (GRCm39)	H281L	probably benign	Het
D130052B06Rik	T	G	11: 33,573,491 (GRCm39)	C74W	unknown	Het
Dap	G	A	15: 31,273,344 (GRCm39)	G66D	probably damaging	Het
Dclk3	A	T	9: 111,297,566 (GRCm39)	H370L	probably benign	Het
Dgka	C	A	10: 128,566,071 (GRCm39)	E360*	probably null	Het
Dst	A	G	1: 34,217,165 (GRCm39)	I1202V	possibly damaging	Het
Fzd10	C	G	5: 128,679,369 (GRCm39)	P363R	probably damaging	Het
Gpx2	A	G	12: 76,842,118 (GRCm39)	L11P	probably damaging	Het
Greb1	A	G	12: 16,789,970 (GRCm39)	L26S	probably damaging	Het
Gtpbp2	A	G	17: 46,475,740 (GRCm39)	K163R	probably benign	Het
Hsd3b1	A	T	3: 98,759,977 (GRCm39)	L338Q	probably damaging	Het
Il15ra	A	G	2: 11,732,576 (GRCm39)	S67G	probably benign	Het
Kcnc2	C	T	10: 112,107,723 (GRCm39)	A38V	probably damaging	Het
Kif19b	A	T	5: 140,449,368 (GRCm39)	Y180F	probably damaging	Het
Klk1b16	A	G	7: 43,790,332 (GRCm39)	D169G	probably benign	Het
Kmt2a	T	C	9: 44,761,208 (GRCm39)	K214E	probably damaging	Het
Lcor	T	A	19: 41,573,189 (GRCm39)	V648D	probably damaging	Het
Lrriq1	C	T	10: 103,050,931 (GRCm39)	G607D	probably damaging	Het
Lysmd3	T	A	13: 81,817,580 (GRCm39)	S186T	probably damaging	Het
Mfsd4b2	T	G	10: 39,798,062 (GRCm39)	T98P	probably benign	Het
Muc16	T	A	9: 18,424,069 (GRCm39)	E8193V	possibly damaging	Het
Nr1i3	A	G	1: 171,042,026 (GRCm39)	T37A	probably damaging	Het
Nr5a2	A	T	1: 136,872,745 (GRCm39)	D112E	probably damaging	Het
Oas1c	A	G	5: 120,943,497 (GRCm39)	I214T	probably damaging	Het
Omp	A	G	7: 97,794,552 (GRCm39)	M25T	probably benign	Het
Or12d17	G	A	17: 37,777,441 (GRCm39)	V115M	probably benign	Het
Or12j4	A	T	7: 140,046,179 (GRCm39)	R22W	probably benign	Het
Or13c9	C	A	4: 52,935,900 (GRCm39)	A128S	probably benign	Het
Or5p58	A	G	7: 107,694,471 (GRCm39)	I102T	probably benign	Het
Or6c210	T	C	10: 129,495,702 (GRCm39)	F9S	probably damaging	Het
Or7g12	A	T	9: 18,899,874 (GRCm39)	I197F	possibly damaging	Het
Paf1	A	G	7: 28,098,133 (GRCm39)	E381G	unknown	Het
Pcdhga8	A	G	18: 37,858,997 (GRCm39)	T18A	probably benign	Het
Pclo	T	C	5: 14,727,627 (GRCm39)	S2162P	unknown	Het
Psg25	T	C	7: 18,258,690 (GRCm39)	I329V	probably benign	Het
Ptov1	A	G	7: 44,514,985 (GRCm39)	S209P	possibly damaging	Het
Ralgapb	A	G	2: 158,279,060 (GRCm39)	K397E	probably damaging	Het
Ryr2	T	A	13: 11,618,618 (GRCm39)	T3866S	probably damaging	Het
Sdccag8	G	A	1: 176,652,371 (GRCm39)	V41I	probably benign	Het
Sdf2l1	T	A	16: 16,948,630 (GRCm39)	D136V	possibly damaging	Het
Slc26a7	A	T	4: 14,506,514 (GRCm39)	S612T	probably damaging	Het
Snf8	T	C	11: 95,930,126 (GRCm39)	F43L	probably benign	Het
Snta1	A	T	2: 154,245,809 (GRCm39)	M104K	probably damaging	Het
Sox2	T	A	3: 34,704,746 (GRCm39)	M61K	probably damaging	Het
Spata31e3	T	C	13: 50,401,588 (GRCm39)	H246R	possibly damaging	Het
Spats2	T	A	15: 99,097,128 (GRCm39)	D293E	probably damaging	Het
Spta1	A	G	1: 174,050,174 (GRCm39)	D1738G	probably damaging	Het
Sqstm1	A	T	11: 50,098,684 (GRCm39)	Y89N	probably damaging	Het
Stat4	T	A	1: 52,050,957 (GRCm39)	N5K	probably benign	Het
Syne4	A	G	7: 30,017,418 (GRCm39)	H294R	probably damaging	Het
Tbc1d7	A	C	13: 43,322,310 (GRCm39)	F45V	probably damaging	Het
Tekt3	T	A	11: 62,974,684 (GRCm39)	N334K	probably damaging	Het
Tgfbr3l	A	G	8: 4,300,620 (GRCm39)	H266R	possibly damaging	Het
Trav7-6	A	G	14: 53,954,604 (GRCm39)	K65E	probably benign	Het
Trip11	A	G	12: 101,851,377 (GRCm39)	S896P	probably damaging	Het
Tubb6	T	C	18: 67,526,046 (GRCm39)	V66A	possibly damaging	Het
Tyk2	A	G	9: 21,016,403 (GRCm39)	L1189P	probably damaging	Het
Usp34	T	G	11: 23,320,302 (GRCm39)	V911G		Het
Wdr53	C	T	16: 32,075,413 (GRCm39)	A206V	probably damaging	Het
Xrn1	A	G	9: 95,920,981 (GRCm39)	E1364G	probably benign	Het
Ywhag	T	C	5: 135,940,217 (GRCm39)	M126V	probably damaging	Het
Zfp383	C	T	7: 29,614,717 (GRCm39)	P324L	probably damaging	Het

Other mutations in Meis1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01927:Meis1	APN	11	18,831,811 (GRCm39)	missense	probably benign	0.25
IGL02156:Meis1	APN	11	18,961,292 (GRCm39)	missense	probably benign	0.03
IGL02376:Meis1	APN	11	18,831,752 (GRCm39)	missense	probably benign	0.06
R0505:Meis1	UTSW	11	18,961,360 (GRCm39)	missense	probably damaging	0.99
R0833:Meis1	UTSW	11	18,831,767 (GRCm39)	missense	possibly damaging	0.91
R1477:Meis1	UTSW	11	18,831,665 (GRCm39)	nonsense	probably null
R1512:Meis1	UTSW	11	18,831,682 (GRCm39)	missense	probably damaging	0.97
R1643:Meis1	UTSW	11	18,966,278 (GRCm39)	missense	probably benign	0.00
R1717:Meis1	UTSW	11	18,960,608 (GRCm39)	intron	probably benign
R2117:Meis1	UTSW	11	18,831,679 (GRCm39)	missense	probably damaging	1.00
R2342:Meis1	UTSW	11	18,831,647 (GRCm39)	missense	probably damaging	1.00
R2426:Meis1	UTSW	11	18,938,356 (GRCm39)	missense	possibly damaging	0.64
R3076:Meis1	UTSW	11	18,961,254 (GRCm39)	missense	probably benign	0.01
R3078:Meis1	UTSW	11	18,961,254 (GRCm39)	missense	probably benign	0.01
R4368:Meis1	UTSW	11	18,960,656 (GRCm39)	intron	probably benign
R4915:Meis1	UTSW	11	18,959,222 (GRCm39)	intron	probably benign
R4916:Meis1	UTSW	11	18,831,776 (GRCm39)	missense	possibly damaging	0.91
R4917:Meis1	UTSW	11	18,959,222 (GRCm39)	intron	probably benign
R4918:Meis1	UTSW	11	18,959,222 (GRCm39)	intron	probably benign
R4948:Meis1	UTSW	11	18,966,308 (GRCm39)	missense	probably benign	0.00
R5093:Meis1	UTSW	11	18,831,785 (GRCm39)	missense	probably benign	0.13
R5506:Meis1	UTSW	11	18,891,747 (GRCm39)	missense	possibly damaging	0.52
R5507:Meis1	UTSW	11	18,966,168 (GRCm39)	missense	probably benign	0.27
R5521:Meis1	UTSW	11	18,938,260 (GRCm39)	splice site	probably benign
R5673:Meis1	UTSW	11	18,962,812 (GRCm39)	missense	probably damaging	1.00
R5813:Meis1	UTSW	11	18,966,229 (GRCm39)	missense	probably benign	0.11
R6347:Meis1	UTSW	11	18,855,631 (GRCm39)	splice site	probably null
R6354:Meis1	UTSW	11	18,966,184 (GRCm39)	missense	possibly damaging	0.89
R6383:Meis1	UTSW	11	18,891,741 (GRCm39)	missense	probably benign
R6624:Meis1	UTSW	11	18,966,215 (GRCm39)	missense	probably benign
R7292:Meis1	UTSW	11	18,961,351 (GRCm39)	missense	probably damaging	1.00
R7413:Meis1	UTSW	11	18,938,357 (GRCm39)	missense	probably damaging	1.00
R7434:Meis1	UTSW	11	18,835,542 (GRCm39)	missense	unknown
R7571:Meis1	UTSW	11	18,891,702 (GRCm39)	missense	probably damaging	1.00
R8719:Meis1	UTSW	11	18,835,587 (GRCm39)	missense	probably benign
R9043:Meis1	UTSW	11	18,831,916 (GRCm39)	missense	possibly damaging	0.58
R9410:Meis1	UTSW	11	18,833,987 (GRCm39)	critical splice donor site	probably null
R9571:Meis1	UTSW	11	18,961,378 (GRCm39)	missense	probably damaging	1.00
Z1176:Meis1	UTSW	11	18,964,317 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TAAAGCGTCATTGACCGAGG -3'
(R):5'- CTCAGATGACTCTCACTGAGAATTC -3'

Sequencing Primer
(F):5'- GTCATTGACCGAGGAACCCATG -3'
(R):5'- GACTCTCACTGAGAATTCTGGAGC -3'

Posted On

2021-10-11