Incidental Mutation 'R5506:Cant1'
| ID |
430936 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Cant1
|
| Ensembl Gene |
ENSMUSG00000025575 |
| Gene Name |
calcium activated nucleotidase 1 |
| Synonyms |
SCAN-1, D11Bwg0554e, Shapy, 5830420C20Rik, Apy1h |
| MMRRC Submission |
043067-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.118)
|
| Stock # |
R5506 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
118297115-118309912 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to T
at 118302268 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Histidine to Glutamine
at position 16
(H16Q)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000101896
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000017620]
[ENSMUST00000092378]
[ENSMUST00000106287]
[ENSMUST00000106288]
[ENSMUST00000106289]
[ENSMUST00000164927]
|
| AlphaFold |
Q8VCF1 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000017620
AA Change: H16Q
PolyPhen 2
Score 0.038 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000017620
Gene: ENSMUSG00000025575
AA Change: H16Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Apyrase
|
115 |
403 |
7e-140 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000092378
AA Change: H16Q
PolyPhen 2
Score 0.038 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000090032
Gene: ENSMUSG00000025575
AA Change: H16Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Apyrase
|
115 |
403 |
7e-140 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000106287
AA Change: H16Q
PolyPhen 2
Score 0.038 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000101894
Gene: ENSMUSG00000025575
AA Change: H16Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Apyrase
|
115 |
403 |
7e-140 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000106288
AA Change: H16Q
PolyPhen 2
Score 0.038 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000101895
Gene: ENSMUSG00000025575
AA Change: H16Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Apyrase
|
115 |
403 |
7e-140 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000106289
AA Change: H16Q
PolyPhen 2
Score 0.104 (Sensitivity: 0.93; Specificity: 0.86)
|
| SMART Domains |
Protein: ENSMUSP00000101896
Gene: ENSMUSG00000025575
AA Change: H16Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Apyrase
|
115 |
216 |
6.3e-39 |
PFAM |
|
Pfam:Apyrase
|
244 |
440 |
3.4e-92 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000164927
AA Change: H16Q
PolyPhen 2
Score 0.038 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000126919
Gene: ENSMUSG00000025575
AA Change: H16Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Apyrase
|
115 |
403 |
7e-140 |
PFAM |
|
| Meta Mutation Damage Score |
0.0691 |
| Coding Region Coverage |
- 1x: 98.3%
- 3x: 97.3%
- 10x: 95.4%
- 20x: 91.4%
|
| Validation Efficiency |
100% (53/53) |
| MGI Phenotype |
FUNCTION: The protein encoded by this gene is a calcium-dependent nucleotidase that preferentially hydrolyzes UDP, GDP, and IDP. The encoded protein has low activity with ADP and ATP and shows no activity with AMP and GMP. Several transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jun 2012]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 47 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1110002E22Rik |
G |
T |
3: 137,773,708 (GRCm39) |
G966W |
probably damaging |
Het |
| A930009A15Rik |
G |
T |
10: 115,414,267 (GRCm39) |
|
probably null |
Het |
| Capn3 |
G |
T |
2: 120,332,901 (GRCm39) |
V612F |
probably damaging |
Het |
| Cep112 |
A |
T |
11: 108,555,429 (GRCm39) |
E141D |
probably damaging |
Het |
| Cept1 |
A |
G |
3: 106,438,564 (GRCm39) |
V173A |
probably benign |
Het |
| CN725425 |
A |
G |
15: 91,120,029 (GRCm39) |
D50G |
possibly damaging |
Het |
| Cubn |
A |
T |
2: 13,496,506 (GRCm39) |
|
probably null |
Het |
| Dnajb12 |
GC |
G |
10: 59,728,574 (GRCm39) |
|
probably null |
Het |
| Dpp8 |
A |
G |
9: 64,985,391 (GRCm39) |
|
probably null |
Het |
| Ecm1 |
G |
A |
3: 95,643,169 (GRCm39) |
T377I |
probably benign |
Het |
| Exosc8 |
A |
G |
3: 54,638,600 (GRCm39) |
|
probably benign |
Het |
| Fasn |
C |
T |
11: 120,700,336 (GRCm39) |
D2165N |
probably benign |
Het |
| Gab2 |
A |
G |
7: 96,952,320 (GRCm39) |
E571G |
probably damaging |
Het |
| Galnt5 |
C |
A |
2: 57,889,637 (GRCm39) |
H412Q |
probably benign |
Het |
| Galr1 |
T |
A |
18: 82,423,989 (GRCm39) |
Y96F |
possibly damaging |
Het |
| Garin1b |
G |
A |
6: 29,319,297 (GRCm39) |
E34K |
probably damaging |
Het |
| Gnl2 |
C |
A |
4: 124,949,158 (GRCm39) |
|
probably benign |
Het |
| H2ac22 |
A |
C |
13: 21,971,081 (GRCm39) |
I103S |
probably damaging |
Het |
| H2ax |
T |
C |
9: 44,246,402 (GRCm39) |
V115A |
probably benign |
Het |
| Heatr9 |
T |
C |
11: 83,405,592 (GRCm39) |
N317S |
possibly damaging |
Het |
| Kndc1 |
A |
G |
7: 139,507,804 (GRCm39) |
Y1254C |
probably damaging |
Het |
| Lrp6 |
A |
T |
6: 134,436,259 (GRCm39) |
D1302E |
probably benign |
Het |
| Mc2r |
A |
T |
18: 68,541,019 (GRCm39) |
Y91* |
probably null |
Het |
| Meis1 |
T |
G |
11: 18,891,747 (GRCm39) |
D267A |
possibly damaging |
Het |
| Mki67 |
T |
C |
7: 135,301,710 (GRCm39) |
K1108R |
possibly damaging |
Het |
| Mroh2a |
A |
G |
1: 88,186,386 (GRCm39) |
S64G |
probably benign |
Het |
| Myh3 |
T |
G |
11: 66,974,915 (GRCm39) |
D219E |
probably damaging |
Het |
| Niban2 |
G |
A |
2: 32,810,994 (GRCm39) |
V335M |
probably damaging |
Het |
| Or10g1b |
T |
C |
14: 52,628,084 (GRCm39) |
I49V |
probably damaging |
Het |
| Or7e166 |
T |
C |
9: 19,624,570 (GRCm39) |
L149P |
possibly damaging |
Het |
| Pi4ka |
A |
G |
16: 17,111,817 (GRCm39) |
C1553R |
probably damaging |
Het |
| Plekhb1 |
C |
A |
7: 100,294,150 (GRCm39) |
|
probably null |
Het |
| Polr3d |
A |
T |
14: 70,678,199 (GRCm39) |
D165E |
possibly damaging |
Het |
| Prb1c |
T |
C |
6: 132,338,819 (GRCm39) |
N133S |
unknown |
Het |
| Psmb1 |
A |
G |
17: 15,710,478 (GRCm39) |
Y24H |
probably damaging |
Het |
| Rab11fip5 |
A |
G |
6: 85,351,119 (GRCm39) |
L131P |
probably damaging |
Het |
| Raph1 |
A |
T |
1: 60,532,657 (GRCm39) |
|
probably benign |
Het |
| Rmc1 |
A |
G |
18: 12,322,013 (GRCm39) |
|
probably benign |
Het |
| Scgb2b27 |
T |
G |
7: 33,711,484 (GRCm39) |
|
probably benign |
Het |
| Serpina10 |
T |
C |
12: 103,592,920 (GRCm39) |
D264G |
probably damaging |
Het |
| Sftpb |
A |
G |
6: 72,281,651 (GRCm39) |
T15A |
possibly damaging |
Het |
| Slc20a1 |
T |
C |
2: 129,052,739 (GRCm39) |
F674L |
probably benign |
Het |
| Syne2 |
A |
T |
12: 75,985,495 (GRCm39) |
N1648Y |
probably benign |
Het |
| Thsd7a |
G |
T |
6: 12,332,016 (GRCm39) |
N1265K |
possibly damaging |
Het |
| Trem2 |
T |
C |
17: 48,658,802 (GRCm39) |
L189P |
probably benign |
Het |
| Washc4 |
A |
T |
10: 83,417,201 (GRCm39) |
R865S |
probably damaging |
Het |
| Zfp536 |
A |
G |
7: 37,268,217 (GRCm39) |
S400P |
probably damaging |
Het |
|
| Other mutations in Cant1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02927:Cant1
|
APN |
11 |
118,301,888 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02989:Cant1
|
APN |
11 |
118,302,038 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0512:Cant1
|
UTSW |
11 |
118,302,091 (GRCm39) |
missense |
probably benign |
0.26 |
|
R0535:Cant1
|
UTSW |
11 |
118,301,969 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1953:Cant1
|
UTSW |
11 |
118,299,609 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2154:Cant1
|
UTSW |
11 |
118,302,263 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2187:Cant1
|
UTSW |
11 |
118,299,667 (GRCm39) |
nonsense |
probably null |
|
|
R3916:Cant1
|
UTSW |
11 |
118,299,572 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4065:Cant1
|
UTSW |
11 |
118,298,823 (GRCm39) |
missense |
probably benign |
|
|
R4786:Cant1
|
UTSW |
11 |
118,299,665 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R4847:Cant1
|
UTSW |
11 |
118,300,936 (GRCm39) |
nonsense |
probably null |
|
|
R5093:Cant1
|
UTSW |
11 |
118,302,038 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5265:Cant1
|
UTSW |
11 |
118,298,876 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5281:Cant1
|
UTSW |
11 |
118,299,696 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5614:Cant1
|
UTSW |
11 |
118,299,569 (GRCm39) |
missense |
probably benign |
|
|
R6705:Cant1
|
UTSW |
11 |
118,298,698 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7538:Cant1
|
UTSW |
11 |
118,302,291 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R7707:Cant1
|
UTSW |
11 |
118,301,724 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R7982:Cant1
|
UTSW |
11 |
118,300,968 (GRCm39) |
missense |
probably benign |
|
|
R9034:Cant1
|
UTSW |
11 |
118,302,128 (GRCm39) |
missense |
probably benign |
|
|
R9463:Cant1
|
UTSW |
11 |
118,302,281 (GRCm39) |
missense |
probably damaging |
0.97 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCAATTGTGCGCATTGTGGG -3'
(R):5'- TCATCTGACTACCTGCTGGG -3'
Sequencing Primer
(F):5'- CGCATTGTGGGTGGGGG -3'
(R):5'- TTCAGCCAGGACTGCACTG -3'
|
| Posted On |
2016-10-05 |
Incidental Mutation