Mutagenetix > Incidental Mutation

Incidental Mutation 'R1595:Arhgap30'

175702

Institutional Source

Beutler Lab

Gene Symbol

Arhgap30

Ensembl Gene

ENSMUSG00000048865

Gene Name

Rho GTPase activating protein 30

Synonyms

6030405P05Rik

MMRRC Submission

039632-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1595 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

171216528-171237808 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 171235909 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Arginine at position 761 (M761R)

Ref Sequence

ENSEMBL: ENSMUSP00000059389 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001284] [ENSMUST00000056449] [ENSMUST00000159207] [ENSMUST00000167546] [ENSMUST00000161241] [ENSMUST00000160486]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000001284

Predicted Effect

probably benign
Transcript: ENSMUST00000056449
AA Change: M761R

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000059389
Gene: ENSMUSG00000048865
AA Change: M761R

Domain	Start	End	E-Value	Type
low complexity region	6	14	N/A	INTRINSIC
RhoGAP	31	212	1.4e-61	SMART
Blast:RhoGAP	225	285	2e-24	BLAST
low complexity region	348	366	N/A	INTRINSIC
low complexity region	367	378	N/A	INTRINSIC
low complexity region	452	463	N/A	INTRINSIC
low complexity region	498	510	N/A	INTRINSIC
low complexity region	514	534	N/A	INTRINSIC
low complexity region	667	690	N/A	INTRINSIC
low complexity region	736	752	N/A	INTRINSIC
low complexity region	924	940	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131607

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135312

Predicted Effect

probably benign
Transcript: ENSMUST00000159207

SMART Domains

Protein: ENSMUSP00000124000
Gene: ENSMUSG00000026641

Domain	Start	End	E-Value	Type
low complexity region	121	145	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159466

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160335

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000161297

Predicted Effect

probably benign
Transcript: ENSMUST00000167546

SMART Domains

Protein: ENSMUSP00000128913
Gene: ENSMUSG00000026641

Domain	Start	End	E-Value	Type
low complexity region	121	145	N/A	INTRINSIC
HLH	205	260	5.01e-15	SMART
low complexity region	265	281	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000161241

SMART Domains

Protein: ENSMUSP00000125729
Gene: ENSMUSG00000026641

Domain	Start	End	E-Value	Type
low complexity region	121	145	N/A	INTRINSIC
HLH	205	260	5.01e-15	SMART
low complexity region	265	281	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160486

SMART Domains

Protein: ENSMUSP00000125363
Gene: ENSMUSG00000026641

Domain	Start	End	E-Value	Type
low complexity region	121	145	N/A	INTRINSIC
HLH	205	260	5.01e-15	SMART
low complexity region	265	281	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 92.1%

Validation Efficiency

97% (77/79)

Allele List at MGI

All alleles(4) : Targeted(2) Gene trapped(2)

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb6	C	T	1: 75,153,944 (GRCm39)		probably null	Het
Abcc10	G	T	17: 46,633,164 (GRCm39)	P556H	probably damaging	Het
Abcc9	A	T	6: 142,578,821 (GRCm39)	D914E	probably benign	Het
Adgrf4	A	G	17: 42,978,764 (GRCm39)	V193A	probably benign	Het
Adm	A	T	7: 110,228,298 (GRCm39)	T160S	probably damaging	Het
Ammecr1l	T	C	18: 31,905,173 (GRCm39)		probably null	Het
Angpt2	T	C	8: 18,748,129 (GRCm39)	D377G	probably damaging	Het
Ankfn1	A	G	11: 89,313,593 (GRCm39)		probably null	Het
Asb4	T	G	6: 5,390,692 (GRCm39)	N28K	probably damaging	Het
Cd177	A	T	7: 24,444,389 (GRCm39)	D696E	probably benign	Het
Cd200	G	A	16: 45,215,214 (GRCm39)	T123I	probably benign	Het
Cfap70	A	G	14: 20,497,604 (GRCm39)	V50A	probably benign	Het
Chaf1b	T	C	16: 93,701,987 (GRCm39)		probably null	Het
Chgb	A	C	2: 132,635,657 (GRCm39)	D533A	probably benign	Het
Col12a1	A	G	9: 79,509,536 (GRCm39)	Y3041H	probably damaging	Het
Crot	T	C	5: 9,024,186 (GRCm39)	N337D	probably benign	Het
Csad	G	A	15: 102,086,217 (GRCm39)	A51V	probably damaging	Het
Cstdc7	T	C	18: 42,306,454 (GRCm39)	M7T	probably benign	Het
Cyp2b9	A	G	7: 25,900,332 (GRCm39)	Y380C	possibly damaging	Het
Dpysl2	G	T	14: 67,052,952 (GRCm39)	A299E	probably damaging	Het
Efcc1	A	G	6: 87,708,440 (GRCm39)	E189G	probably damaging	Het
Egfr	T	C	11: 16,856,847 (GRCm39)	I940T	probably damaging	Het
Etnk2	T	G	1: 133,300,917 (GRCm39)	L228R	possibly damaging	Het
Fitm2	A	G	2: 163,311,610 (GRCm39)	I201T	probably benign	Het
Foxo1	A	T	3: 52,253,375 (GRCm39)	M513L	probably benign	Het
Galnt16	A	T	12: 80,637,410 (GRCm39)	K379I	probably damaging	Het
Gm57858	C	T	3: 36,073,146 (GRCm39)	A379T	probably damaging	Het
Gtf2a1	T	A	12: 91,556,323 (GRCm39)	N6Y	probably damaging	Het
Kcnc1	G	A	7: 46,077,010 (GRCm39)	V271M	probably benign	Het
Klhdc8b	T	A	9: 108,328,362 (GRCm39)	D30V	probably damaging	Het
Lrrc7	G	A	3: 157,882,914 (GRCm39)	Q448*	probably null	Het
Med29	T	C	7: 28,091,928 (GRCm39)	D54G	probably damaging	Het
Mfn2	T	C	4: 147,979,153 (GRCm39)	T60A	probably benign	Het
Mroh1	T	C	15: 76,317,730 (GRCm39)		probably benign	Het
Mxd1	A	T	6: 86,628,453 (GRCm39)	V149E	possibly damaging	Het
Naip6	A	T	13: 100,435,602 (GRCm39)	Y974N	probably damaging	Het
Ndn	C	T	7: 61,998,256 (GRCm39)	P34L	probably benign	Het
Nhsl1	G	T	10: 18,402,096 (GRCm39)	K1107N	probably damaging	Het
Nlrc3	T	C	16: 3,783,166 (GRCm39)	E81G	probably benign	Het
Or10al3	G	T	17: 38,012,004 (GRCm39)	A148S	probably benign	Het
Or9e1	G	T	11: 58,732,478 (GRCm39)	M179I	probably benign	Het
Osbpl5	C	T	7: 143,256,955 (GRCm39)	V392M	possibly damaging	Het
Pcdhb22	T	A	18: 37,653,506 (GRCm39)	V401E	probably damaging	Het
Pcm1	T	A	8: 41,762,672 (GRCm39)	H1444Q	probably damaging	Het
Pdlim2	A	G	14: 70,402,193 (GRCm39)	Y308H	probably damaging	Het
Phf14	T	G	6: 11,988,752 (GRCm39)	L664R	possibly damaging	Het
Phkb	T	C	8: 86,753,182 (GRCm39)		probably benign	Het
Ptchd3	T	A	11: 121,721,420 (GRCm39)	F98I	probably damaging	Het
Ptprt	C	T	2: 161,652,469 (GRCm39)		probably null	Het
Rbp3	A	T	14: 33,678,155 (GRCm39)	H701L	possibly damaging	Het
Rgl1	T	C	1: 152,550,774 (GRCm39)		probably benign	Het
Satb1	A	T	17: 52,089,729 (GRCm39)	S373T	possibly damaging	Het
Scn3a	T	A	2: 65,329,323 (GRCm39)	Y769F	probably damaging	Het
Senp7	A	G	16: 56,005,131 (GRCm39)	I922V	probably damaging	Het
Serpina3g	A	G	12: 104,205,531 (GRCm39)	E90G	probably benign	Het
Sh3rf2	C	T	18: 42,244,353 (GRCm39)	T273I	probably damaging	Het
Slc15a3	A	G	19: 10,831,675 (GRCm39)	T350A	probably benign	Het
Socs5	T	C	17: 87,441,623 (GRCm39)	C188R	probably damaging	Het
Tacr1	A	G	6: 82,380,723 (GRCm39)	T45A	probably benign	Het
Th	A	G	7: 142,450,745 (GRCm39)	V117A	probably benign	Het
Thpo	C	A	16: 20,547,206 (GRCm39)	D81Y	probably damaging	Het
Tmem229b-ps	A	G	10: 53,351,385 (GRCm39)		noncoding transcript	Het
Trpc4	A	G	3: 54,223,236 (GRCm39)	E724G	probably benign	Het
Ttn	T	C	2: 76,576,977 (GRCm39)	T24639A	probably damaging	Het
Ulk4	A	G	9: 120,873,904 (GRCm39)	S1176P	probably damaging	Het
Urgcp	T	C	11: 5,667,447 (GRCm39)	D297G	probably damaging	Het
Vmn1r168	G	A	7: 23,240,620 (GRCm39)	G159D	probably damaging	Het
Vmn1r67	A	T	7: 10,181,597 (GRCm39)	N226I	probably benign	Het
Vmn2r27	T	C	6: 124,208,574 (GRCm39)	E57G	probably benign	Het
Zdhhc14	G	T	17: 5,543,831 (GRCm39)	R37L	probably benign	Het
Zfp512b	G	A	2: 181,230,229 (GRCm39)	T499I	probably damaging	Het
Zmym2	A	T	14: 57,158,187 (GRCm39)	K575N	probably benign	Het

Other mutations in Arhgap30

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01638:Arhgap30	APN	1	171,225,138 (GRCm39)	missense	probably damaging	1.00
IGL02016:Arhgap30	APN	1	171,235,315 (GRCm39)	missense	probably damaging	1.00
IGL02552:Arhgap30	APN	1	171,235,324 (GRCm39)	missense	probably damaging	1.00
IGL03343:Arhgap30	APN	1	171,236,662 (GRCm39)	missense	probably damaging	1.00
consonance	UTSW	1	171,231,707 (GRCm39)	critical splice donor site	probably null
deliverance	UTSW	1	171,225,086 (GRCm39)	nonsense	probably null
redemption	UTSW	1	171,229,822 (GRCm39)	missense	probably damaging	1.00
tercero	UTSW	1	171,235,909 (GRCm39)	missense	probably benign
FR4304:Arhgap30	UTSW	1	171,232,736 (GRCm39)	small insertion	probably benign
P0017:Arhgap30	UTSW	1	171,236,272 (GRCm39)	missense	probably benign	0.02
R0045:Arhgap30	UTSW	1	171,235,998 (GRCm39)	missense	probably benign
R0045:Arhgap30	UTSW	1	171,235,998 (GRCm39)	missense	probably benign
R0115:Arhgap30	UTSW	1	171,235,516 (GRCm39)	missense	possibly damaging	0.92
R0320:Arhgap30	UTSW	1	171,231,372 (GRCm39)	missense	possibly damaging	0.81
R0399:Arhgap30	UTSW	1	171,232,384 (GRCm39)	missense	probably damaging	0.97
R0945:Arhgap30	UTSW	1	171,230,854 (GRCm39)	missense	probably damaging	1.00
R1484:Arhgap30	UTSW	1	171,230,839 (GRCm39)	missense	probably damaging	1.00
R2173:Arhgap30	UTSW	1	171,235,335 (GRCm39)	missense	probably damaging	1.00
R2281:Arhgap30	UTSW	1	171,216,896 (GRCm39)	missense	probably damaging	1.00
R2864:Arhgap30	UTSW	1	171,235,774 (GRCm39)	missense	probably damaging	1.00
R4066:Arhgap30	UTSW	1	171,235,891 (GRCm39)	missense	probably benign
R4888:Arhgap30	UTSW	1	171,236,880 (GRCm39)	missense	probably benign
R4937:Arhgap30	UTSW	1	171,230,897 (GRCm39)	missense	probably benign	0.03
R4944:Arhgap30	UTSW	1	171,229,822 (GRCm39)	missense	probably damaging	1.00
R5170:Arhgap30	UTSW	1	171,235,618 (GRCm39)	missense	probably benign	0.00
R5218:Arhgap30	UTSW	1	171,236,328 (GRCm39)	missense	probably benign
R5385:Arhgap30	UTSW	1	171,235,848 (GRCm39)	missense	probably benign
R5541:Arhgap30	UTSW	1	171,231,707 (GRCm39)	critical splice donor site	probably null
R6028:Arhgap30	UTSW	1	171,235,888 (GRCm39)	missense	probably benign
R6747:Arhgap30	UTSW	1	171,235,297 (GRCm39)	missense	probably damaging	1.00
R6748:Arhgap30	UTSW	1	171,232,378 (GRCm39)	missense	possibly damaging	0.50
R6869:Arhgap30	UTSW	1	171,236,623 (GRCm39)	missense	probably damaging	1.00
R7223:Arhgap30	UTSW	1	171,235,139 (GRCm39)	missense	probably damaging	1.00
R8113:Arhgap30	UTSW	1	171,225,086 (GRCm39)	nonsense	probably null
R8543:Arhgap30	UTSW	1	171,232,530 (GRCm39)	missense	probably damaging	1.00
R8545:Arhgap30	UTSW	1	171,234,998 (GRCm39)	missense	probably damaging	1.00
R8682:Arhgap30	UTSW	1	171,234,970 (GRCm39)	missense	probably benign	0.00
R8693:Arhgap30	UTSW	1	171,225,094 (GRCm39)	missense	probably damaging	1.00
R9026:Arhgap30	UTSW	1	171,228,258 (GRCm39)	missense	probably damaging	1.00
R9245:Arhgap30	UTSW	1	171,235,957 (GRCm39)	missense	possibly damaging	0.90
R9515:Arhgap30	UTSW	1	171,236,002 (GRCm39)	missense	probably benign	0.38
R9524:Arhgap30	UTSW	1	171,225,114 (GRCm39)	missense	probably damaging	0.99
R9703:Arhgap30	UTSW	1	171,235,339 (GRCm39)	missense	probably damaging	1.00
X0020:Arhgap30	UTSW	1	171,232,653 (GRCm39)	missense	possibly damaging	0.53
Z1177:Arhgap30	UTSW	1	171,235,476 (GRCm39)	missense	probably benign	0.01
Z1189:Arhgap30	UTSW	1	171,235,938 (GRCm39)	missense	possibly damaging	0.89

Predicted Primers

PCR Primer
(F):5'- AGGGTGTGGGAAACAACCTCCAAC -3'
(R):5'- GGTCACCAACACCTCTCATGACTTC -3'

Sequencing Primer
(F):5'- TGCTCAGAAACCAGGCAG -3'
(R):5'- TGTTCCTTGCTGAAAACCCC -3'

Posted On

2014-04-24