Incidental Mutation 'R3153:Cpt1a'
| ID |
264504 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Cpt1a
|
| Ensembl Gene |
ENSMUSG00000024900 |
| Gene Name |
carnitine palmitoyltransferase 1a, liver |
| Synonyms |
Cpt1, CPTI, L-CPT I |
| MMRRC Submission |
040604-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R3153 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
19 |
| Chromosomal Location |
3372334-3435733 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 3406430 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Cysteine
at position 132
(Y132C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000025835
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000025835]
|
| AlphaFold |
P97742 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000025835
AA Change: Y132C
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000025835
Gene: ENSMUSG00000024900
AA Change: Y132C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:CPT_N
|
1 |
47 |
2.3e-30 |
PFAM |
|
transmembrane domain
|
49 |
71 |
N/A |
INTRINSIC |
|
transmembrane domain
|
104 |
126 |
N/A |
INTRINSIC |
|
Pfam:Carn_acyltransf
|
171 |
762 |
6e-186 |
PFAM |
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 94.4%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The mitochondrial oxidation of long-chain fatty acids is initiated by the sequential action of carnitine palmitoyltransferase I (which is located in the outer membrane and is detergent-labile) and carnitine palmitoyltransferase II (which is located in the inner membrane and is detergent-stable), together with a carnitine-acylcarnitine translocase. CPT I is the key enzyme in the carnitine-dependent transport across the mitochondrial inner membrane and its deficiency results in a decreased rate of fatty acid beta-oxidation. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice display embryonic lethality. Heterozygous null mice display decreased serum glucose and increased serum free fatty acid levels after fasting. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 54 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 6820408C15Rik |
A |
C |
2: 152,282,744 (GRCm39) |
N200H |
probably damaging |
Het |
| Abca17 |
T |
A |
17: 24,547,720 (GRCm39) |
D218V |
probably damaging |
Het |
| Abhd12 |
A |
G |
2: 150,676,275 (GRCm39) |
F361L |
probably benign |
Het |
| Abr |
A |
T |
11: 76,377,295 (GRCm39) |
I59N |
probably damaging |
Het |
| Agbl1 |
A |
G |
7: 76,369,944 (GRCm39) |
E681G |
probably damaging |
Het |
| B3gnt4 |
G |
T |
5: 123,648,716 (GRCm39) |
R27L |
probably benign |
Het |
| Cct8l1 |
A |
C |
5: 25,722,137 (GRCm39) |
E284A |
probably damaging |
Het |
| Chd7 |
T |
A |
4: 8,855,174 (GRCm39) |
N2134K |
probably benign |
Het |
| Chrna3 |
C |
T |
9: 54,923,334 (GRCm39) |
C158Y |
probably damaging |
Het |
| Cndp2 |
C |
A |
18: 84,686,722 (GRCm39) |
M433I |
probably benign |
Het |
| Cnnm3 |
T |
A |
1: 36,560,303 (GRCm39) |
S608T |
probably damaging |
Het |
| Cnot1 |
T |
C |
8: 96,470,906 (GRCm39) |
E1314G |
possibly damaging |
Het |
| Col20a1 |
C |
T |
2: 180,650,386 (GRCm39) |
P1074L |
probably damaging |
Het |
| Coq6 |
G |
A |
12: 84,418,309 (GRCm39) |
V298M |
probably damaging |
Het |
| Dcdc2a |
A |
C |
13: 25,286,340 (GRCm39) |
I125L |
probably benign |
Het |
| Eps8l1 |
A |
T |
7: 4,474,798 (GRCm39) |
I321F |
probably damaging |
Het |
| Fancd2 |
A |
G |
6: 113,570,230 (GRCm39) |
S1394G |
possibly damaging |
Het |
| Fcrl5 |
T |
C |
3: 87,350,987 (GRCm39) |
F166L |
probably benign |
Het |
| Gatc |
T |
C |
5: 115,473,546 (GRCm39) |
E131G |
probably benign |
Het |
| Gpld1 |
T |
C |
13: 25,127,603 (GRCm39) |
S2P |
unknown |
Het |
| Gprc5b |
G |
A |
7: 118,575,770 (GRCm39) |
P385L |
probably damaging |
Het |
| Gsc2 |
G |
A |
16: 17,732,364 (GRCm39) |
R137W |
probably damaging |
Het |
| Hsd3b1 |
T |
C |
3: 98,759,980 (GRCm39) |
D337G |
probably damaging |
Het |
| Ireb2 |
T |
C |
9: 54,793,230 (GRCm39) |
|
probably null |
Het |
| Kank1 |
T |
A |
19: 25,388,052 (GRCm39) |
V575E |
possibly damaging |
Het |
| Kcnmb1 |
A |
T |
11: 33,916,339 (GRCm39) |
D95V |
probably damaging |
Het |
| L3mbtl4 |
T |
A |
17: 68,764,243 (GRCm39) |
Y125* |
probably null |
Het |
| Lce1h |
C |
T |
3: 92,670,982 (GRCm39) |
G57R |
unknown |
Het |
| Lgalsl |
A |
G |
11: 20,776,487 (GRCm39) |
F135S |
probably damaging |
Het |
| Lrba |
A |
G |
3: 86,192,526 (GRCm39) |
M147V |
probably damaging |
Het |
| Mdm2 |
T |
C |
10: 117,545,618 (GRCm39) |
E23G |
possibly damaging |
Het |
| Mthfd1 |
C |
A |
12: 76,358,737 (GRCm39) |
Q67K |
probably benign |
Het |
| Mtus2 |
T |
C |
5: 148,019,870 (GRCm39) |
L755P |
probably damaging |
Het |
| Or5m13b |
T |
C |
2: 85,754,074 (GRCm39) |
V154A |
probably benign |
Het |
| Orc3 |
A |
G |
4: 34,575,124 (GRCm39) |
F587L |
probably damaging |
Het |
| Pcdhb7 |
C |
T |
18: 37,476,126 (GRCm39) |
P421S |
probably damaging |
Het |
| Pgk2 |
T |
A |
17: 40,519,134 (GRCm39) |
D98V |
probably damaging |
Het |
| Pkd1l1 |
A |
C |
11: 8,817,207 (GRCm39) |
S1364A |
probably benign |
Het |
| Rin3 |
A |
C |
12: 102,334,800 (GRCm39) |
E157A |
unknown |
Het |
| Rnf126 |
A |
T |
10: 79,597,465 (GRCm39) |
I149N |
probably damaging |
Het |
| Rph3a |
T |
C |
5: 121,111,440 (GRCm39) |
T47A |
probably damaging |
Het |
| Sap18 |
T |
C |
14: 58,039,402 (GRCm39) |
M68T |
probably benign |
Het |
| Sfrp2 |
A |
G |
3: 83,680,577 (GRCm39) |
T246A |
probably benign |
Het |
| Slc18a3 |
A |
G |
14: 32,185,228 (GRCm39) |
V385A |
probably benign |
Het |
| Slitrk3 |
C |
T |
3: 72,956,315 (GRCm39) |
W819* |
probably null |
Het |
| Smap1 |
A |
T |
1: 23,892,630 (GRCm39) |
D111E |
probably damaging |
Het |
| Spesp1 |
G |
A |
9: 62,189,376 (GRCm39) |
|
probably benign |
Het |
| Styk1 |
A |
T |
6: 131,286,975 (GRCm39) |
Y84* |
probably null |
Het |
| Sv2a |
T |
A |
3: 96,092,574 (GRCm39) |
D91E |
possibly damaging |
Het |
| Tbc1d5 |
A |
G |
17: 51,275,264 (GRCm39) |
I77T |
probably damaging |
Het |
| Trim10 |
T |
A |
17: 37,182,580 (GRCm39) |
C149S |
probably damaging |
Het |
| Zbtb38 |
T |
C |
9: 96,570,302 (GRCm39) |
K261E |
probably benign |
Het |
| Zfp202 |
T |
C |
9: 40,119,734 (GRCm39) |
L179P |
probably benign |
Het |
| Zkscan5 |
T |
A |
5: 145,149,437 (GRCm39) |
S251R |
probably benign |
Het |
|
| Other mutations in Cpt1a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00785:Cpt1a
|
APN |
19 |
3,416,389 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
allosouris
|
UTSW |
19 |
3,428,472 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Tyrannosouris
|
UTSW |
19 |
3,412,156 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0029:Cpt1a
|
UTSW |
19 |
3,431,674 (GRCm39) |
missense |
probably benign |
0.04 |
|
R0029:Cpt1a
|
UTSW |
19 |
3,431,674 (GRCm39) |
missense |
probably benign |
0.04 |
|
R0305:Cpt1a
|
UTSW |
19 |
3,428,455 (GRCm39) |
missense |
probably benign |
|
|
R0963:Cpt1a
|
UTSW |
19 |
3,431,634 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1511:Cpt1a
|
UTSW |
19 |
3,415,788 (GRCm39) |
splice site |
probably benign |
|
|
R2102:Cpt1a
|
UTSW |
19 |
3,421,585 (GRCm39) |
missense |
probably benign |
0.25 |
|
R3034:Cpt1a
|
UTSW |
19 |
3,428,390 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5195:Cpt1a
|
UTSW |
19 |
3,433,800 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R5391:Cpt1a
|
UTSW |
19 |
3,399,260 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5964:Cpt1a
|
UTSW |
19 |
3,415,760 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R6031:Cpt1a
|
UTSW |
19 |
3,421,556 (GRCm39) |
splice site |
probably null |
|
|
R6031:Cpt1a
|
UTSW |
19 |
3,421,556 (GRCm39) |
splice site |
probably null |
|
|
R6246:Cpt1a
|
UTSW |
19 |
3,426,550 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6339:Cpt1a
|
UTSW |
19 |
3,412,152 (GRCm39) |
missense |
probably benign |
0.27 |
|
R6427:Cpt1a
|
UTSW |
19 |
3,412,156 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6535:Cpt1a
|
UTSW |
19 |
3,415,788 (GRCm39) |
splice site |
probably null |
|
|
R6621:Cpt1a
|
UTSW |
19 |
3,428,472 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6892:Cpt1a
|
UTSW |
19 |
3,421,660 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7142:Cpt1a
|
UTSW |
19 |
3,425,100 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7385:Cpt1a
|
UTSW |
19 |
3,430,155 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7908:Cpt1a
|
UTSW |
19 |
3,412,202 (GRCm39) |
missense |
probably benign |
0.26 |
|
R8098:Cpt1a
|
UTSW |
19 |
3,420,849 (GRCm39) |
missense |
probably benign |
|
|
R8362:Cpt1a
|
UTSW |
19 |
3,420,744 (GRCm39) |
nonsense |
probably null |
|
|
R8444:Cpt1a
|
UTSW |
19 |
3,431,981 (GRCm39) |
missense |
probably benign |
|
|
R8854:Cpt1a
|
UTSW |
19 |
3,406,327 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8918:Cpt1a
|
UTSW |
19 |
3,408,258 (GRCm39) |
missense |
|
|
|
R8951:Cpt1a
|
UTSW |
19 |
3,412,211 (GRCm39) |
missense |
probably benign |
0.14 |
|
R9217:Cpt1a
|
UTSW |
19 |
3,425,111 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9295:Cpt1a
|
UTSW |
19 |
3,428,441 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9495:Cpt1a
|
UTSW |
19 |
3,433,795 (GRCm39) |
missense |
probably benign |
|
|
R9560:Cpt1a
|
UTSW |
19 |
3,402,531 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R9735:Cpt1a
|
UTSW |
19 |
3,420,825 (GRCm39) |
missense |
probably benign |
|
|
X0019:Cpt1a
|
UTSW |
19 |
3,416,348 (GRCm39) |
missense |
probably benign |
0.01 |
|
Z1177:Cpt1a
|
UTSW |
19 |
3,420,727 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Cpt1a
|
UTSW |
19 |
3,416,370 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGGTAGCTGCCATTACCACC -3'
(R):5'- TTAGCAAAAGCAGCCCTGGC -3'
Sequencing Primer
(F):5'- ACCACCTTCCATGCTGACG -3'
(R):5'- TCCATGCAAGTGTCATGAGC -3'
|
| Posted On |
2015-02-05 |
Incidental Mutation