Incidental Mutation 'R3429:Lonp1'
| ID |
268036 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Lonp1
|
| Ensembl Gene |
ENSMUSG00000041168 |
| Gene Name |
lon peptidase 1, mitochondrial |
| Synonyms |
1200017E13Rik, Prss15, LON |
| MMRRC Submission |
040647-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R3429 (G1)
|
| Quality Score |
147 |
|
Status
|
Validated
|
| Chromosome |
17 |
| Chromosomal Location |
56921297-56933887 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 56925337 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Valine
at position 485
(D485V)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000041814
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000047226]
[ENSMUST00000080492]
|
| AlphaFold |
Q8CGK3 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000047226
AA Change: D485V
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000041814
Gene: ENSMUSG00000041168
AA Change: D485V
| Domain | Start | End | E-Value | Type |
|---|
|
LON
|
111 |
357 |
3.95e-62 |
SMART |
|
low complexity region
|
389 |
404 |
N/A |
INTRINSIC |
|
AAA
|
504 |
649 |
1.81e-14 |
SMART |
|
Pfam:Lon_C
|
725 |
938 |
1e-71 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000080492
|
| SMART Domains |
Protein: ENSMUSP00000079340
Gene: ENSMUSG00000057863
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribosomal_L36e
|
2 |
100 |
2.4e-51 |
PFAM |
|
| Meta Mutation Damage Score |
0.8997 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 96.9%
- 20x: 93.7%
|
| Validation Efficiency |
98% (65/66) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a mitochondrial matrix protein that belongs to the Lon family of ATP-dependent proteases. This protein mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides in the mitochondrial matrix. It may also have a chaperone function in the assembly of inner membrane protein complexes, and participate in the regulation of mitochondrial gene expression and maintenance of the integrity of the mitochondrial genome. Decreased expression of this gene has been noted in a patient with hereditary spastic paraplegia (PMID:18378094). Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Feb 2013]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit embryonic lethality with embryonic growth retardation, small size and decreased mitochondrial DNA content. Mice heterozygous for this allele exhibit reduced chemically-induced tumors. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 61 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A2m |
T |
A |
6: 121,613,249 (GRCm39) |
M1K |
probably null |
Het |
| Afap1l2 |
C |
A |
19: 56,904,238 (GRCm39) |
R683L |
probably damaging |
Het |
| Ankfy1 |
C |
T |
11: 72,602,980 (GRCm39) |
|
probably benign |
Het |
| Aoc1 |
A |
T |
6: 48,883,010 (GRCm39) |
E295D |
probably benign |
Het |
| Asah1 |
C |
T |
8: 41,804,925 (GRCm39) |
|
probably benign |
Het |
| B4galnt4 |
T |
C |
7: 140,650,752 (GRCm39) |
L842P |
probably damaging |
Het |
| Bhmt |
T |
C |
13: 93,763,855 (GRCm39) |
E62G |
probably damaging |
Het |
| Btbd10 |
T |
A |
7: 112,951,016 (GRCm39) |
R25* |
probably null |
Het |
| Cdh5 |
T |
A |
8: 104,857,600 (GRCm39) |
I342N |
possibly damaging |
Het |
| Clca3a2 |
T |
A |
3: 144,512,088 (GRCm39) |
E109D |
probably benign |
Het |
| Cntrl |
T |
C |
2: 35,035,112 (GRCm39) |
L913S |
probably damaging |
Het |
| Col12a1 |
T |
A |
9: 79,587,593 (GRCm39) |
T1183S |
probably benign |
Het |
| Col6a6 |
A |
T |
9: 105,655,166 (GRCm39) |
Y852N |
probably damaging |
Het |
| Cpeb2 |
T |
C |
5: 43,438,573 (GRCm39) |
|
probably null |
Het |
| Cyp2c66 |
T |
A |
19: 39,151,892 (GRCm39) |
N202K |
probably damaging |
Het |
| Dchs1 |
A |
G |
7: 105,405,711 (GRCm39) |
V2391A |
possibly damaging |
Het |
| Dgat2 |
A |
G |
7: 98,806,300 (GRCm39) |
V299A |
probably benign |
Het |
| Dnah6 |
G |
A |
6: 73,098,797 (GRCm39) |
S2034L |
possibly damaging |
Het |
| Eps8l2 |
G |
A |
7: 140,937,832 (GRCm39) |
|
probably null |
Het |
| Fgg |
T |
A |
3: 82,920,090 (GRCm39) |
F290I |
probably damaging |
Het |
| Filip1 |
A |
T |
9: 79,760,952 (GRCm39) |
M194K |
probably damaging |
Het |
| Foxl2 |
T |
C |
9: 98,838,035 (GRCm39) |
F108L |
probably damaging |
Het |
| Fut1 |
T |
C |
7: 45,268,798 (GRCm39) |
F196L |
probably damaging |
Het |
| Gm10323 |
A |
C |
13: 67,002,888 (GRCm39) |
W17G |
probably damaging |
Het |
| Gstz1 |
T |
A |
12: 87,210,470 (GRCm39) |
|
probably null |
Het |
| Hacd1 |
T |
C |
2: 14,049,586 (GRCm39) |
|
probably benign |
Het |
| Hmcn2 |
T |
A |
2: 31,299,156 (GRCm39) |
L2834Q |
possibly damaging |
Het |
| Hs3st3a1 |
C |
T |
11: 64,327,148 (GRCm39) |
R86W |
probably benign |
Het |
| Krtap1-4 |
G |
C |
11: 99,474,020 (GRCm39) |
|
probably benign |
Het |
| Lmntd2 |
A |
G |
7: 140,793,910 (GRCm39) |
V21A |
probably benign |
Het |
| Mia2 |
A |
G |
12: 59,236,427 (GRCm39) |
T1346A |
possibly damaging |
Het |
| Mpp2 |
T |
C |
11: 101,976,141 (GRCm39) |
T6A |
probably benign |
Het |
| Mycbp2 |
A |
T |
14: 103,466,866 (GRCm39) |
V1299E |
probably damaging |
Het |
| Myo1d |
C |
T |
11: 80,573,236 (GRCm39) |
G197E |
probably damaging |
Het |
| Nfib |
T |
C |
4: 82,416,532 (GRCm39) |
I168V |
possibly damaging |
Het |
| Or2ak5 |
T |
A |
11: 58,611,097 (GRCm39) |
Y259F |
probably damaging |
Het |
| Or2b7 |
A |
T |
13: 21,739,975 (GRCm39) |
C72* |
probably null |
Het |
| Or2y1e |
C |
T |
11: 49,218,868 (GRCm39) |
A210V |
probably benign |
Het |
| Or4c121 |
T |
A |
2: 89,023,617 (GRCm39) |
I254L |
probably benign |
Het |
| Or4c29 |
C |
T |
2: 88,739,810 (GRCm39) |
R309Q |
probably benign |
Het |
| Parp3 |
A |
T |
9: 106,351,922 (GRCm39) |
I150K |
probably damaging |
Het |
| Pnp |
A |
G |
14: 51,185,443 (GRCm39) |
D49G |
probably benign |
Het |
| Prkcq |
T |
C |
2: 11,251,781 (GRCm39) |
I206T |
probably damaging |
Het |
| Rif1 |
GCCACCA |
GCCA |
2: 52,000,336 (GRCm39) |
|
probably benign |
Het |
| Rlf |
A |
G |
4: 121,007,729 (GRCm39) |
L417P |
probably benign |
Het |
| Scn7a |
AT |
ATT |
2: 66,531,239 (GRCm39) |
|
probably null |
Het |
| Sgce |
T |
A |
6: 4,730,008 (GRCm39) |
D72V |
probably benign |
Het |
| Sh3d21 |
A |
G |
4: 126,056,625 (GRCm39) |
S66P |
probably benign |
Het |
| Sost |
C |
G |
11: 101,854,865 (GRCm39) |
G148A |
probably damaging |
Het |
| Sybu |
T |
C |
15: 44,609,854 (GRCm39) |
E138G |
probably damaging |
Het |
| Tas1r2 |
A |
G |
4: 139,396,886 (GRCm39) |
T742A |
probably damaging |
Het |
| Tet3 |
A |
G |
6: 83,380,401 (GRCm39) |
V589A |
probably damaging |
Het |
| Tnxb |
C |
A |
17: 34,891,605 (GRCm39) |
C649* |
probably null |
Het |
| Tnxb |
A |
G |
17: 34,922,561 (GRCm39) |
Y2458C |
probably damaging |
Het |
| Tsku |
T |
C |
7: 98,001,746 (GRCm39) |
N195S |
probably damaging |
Het |
| Vmn1r215 |
T |
A |
13: 23,260,378 (GRCm39) |
N139K |
probably damaging |
Het |
| Zfp106 |
T |
C |
2: 120,357,544 (GRCm39) |
H1117R |
probably benign |
Het |
| Zfp26 |
A |
G |
9: 20,352,756 (GRCm39) |
|
probably benign |
Het |
| Zfp764l1 |
T |
C |
7: 126,990,914 (GRCm39) |
T358A |
possibly damaging |
Het |
| Zfp804b |
T |
A |
5: 7,230,625 (GRCm39) |
|
probably benign |
Het |
| Zfr |
T |
C |
15: 12,153,006 (GRCm39) |
S546P |
probably benign |
Het |
|
| Other mutations in Lonp1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00327:Lonp1
|
APN |
17 |
56,926,265 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00934:Lonp1
|
APN |
17 |
56,921,683 (GRCm39) |
missense |
probably benign |
0.21 |
|
IGL01065:Lonp1
|
APN |
17 |
56,922,500 (GRCm39) |
unclassified |
probably benign |
|
|
IGL01343:Lonp1
|
APN |
17 |
56,922,586 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
IGL01734:Lonp1
|
APN |
17 |
56,923,026 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02141:Lonp1
|
APN |
17 |
56,922,086 (GRCm39) |
missense |
probably benign |
0.19 |
|
IGL02979:Lonp1
|
APN |
17 |
56,928,940 (GRCm39) |
missense |
probably benign |
0.02 |
|
chaney
|
UTSW |
17 |
56,929,515 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Karloff
|
UTSW |
17 |
56,925,406 (GRCm39) |
missense |
probably benign |
|
|
R0015:Lonp1
|
UTSW |
17 |
56,925,406 (GRCm39) |
missense |
probably benign |
|
|
R0015:Lonp1
|
UTSW |
17 |
56,925,406 (GRCm39) |
missense |
probably benign |
|
|
R0863:Lonp1
|
UTSW |
17 |
56,925,331 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1343:Lonp1
|
UTSW |
17 |
56,927,272 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1735:Lonp1
|
UTSW |
17 |
56,921,956 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1975:Lonp1
|
UTSW |
17 |
56,922,068 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R1976:Lonp1
|
UTSW |
17 |
56,922,068 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R1977:Lonp1
|
UTSW |
17 |
56,922,068 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R2484:Lonp1
|
UTSW |
17 |
56,921,659 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2895:Lonp1
|
UTSW |
17 |
56,922,562 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3123:Lonp1
|
UTSW |
17 |
56,933,488 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R3125:Lonp1
|
UTSW |
17 |
56,933,488 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R3726:Lonp1
|
UTSW |
17 |
56,925,310 (GRCm39) |
unclassified |
probably benign |
|
|
R3767:Lonp1
|
UTSW |
17 |
56,928,952 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R4618:Lonp1
|
UTSW |
17 |
56,929,511 (GRCm39) |
missense |
probably benign |
0.03 |
|
R4859:Lonp1
|
UTSW |
17 |
56,933,587 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4951:Lonp1
|
UTSW |
17 |
56,927,335 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R5208:Lonp1
|
UTSW |
17 |
56,924,793 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5620:Lonp1
|
UTSW |
17 |
56,927,263 (GRCm39) |
missense |
probably benign |
0.05 |
|
R5621:Lonp1
|
UTSW |
17 |
56,927,263 (GRCm39) |
missense |
probably benign |
0.05 |
|
R5622:Lonp1
|
UTSW |
17 |
56,927,263 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6131:Lonp1
|
UTSW |
17 |
56,921,457 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6377:Lonp1
|
UTSW |
17 |
56,928,961 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R6692:Lonp1
|
UTSW |
17 |
56,926,230 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7052:Lonp1
|
UTSW |
17 |
56,933,549 (GRCm39) |
missense |
probably benign |
0.31 |
|
R7131:Lonp1
|
UTSW |
17 |
56,924,814 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7295:Lonp1
|
UTSW |
17 |
56,929,495 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R7739:Lonp1
|
UTSW |
17 |
56,933,620 (GRCm39) |
missense |
probably benign |
|
|
R7792:Lonp1
|
UTSW |
17 |
56,929,515 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8307:Lonp1
|
UTSW |
17 |
56,933,573 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8546:Lonp1
|
UTSW |
17 |
56,933,702 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9257:Lonp1
|
UTSW |
17 |
56,927,516 (GRCm39) |
nonsense |
probably null |
|
|
R9586:Lonp1
|
UTSW |
17 |
56,924,839 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TAATCATGTTAGGGGCCCCTC -3'
(R):5'- GCACACTGCATCACTAGGAG -3'
Sequencing Primer
(F):5'- TGGCCCAAAGCATAACTTGTC -3'
(R):5'- GCATCACTAGGAGCATTTGGTCAC -3'
|
| Posted On |
2015-02-18 |
Incidental Mutation