Incidental Mutation 'R5863:Prl3c1'
ID |
490487 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Prl3c1
|
Ensembl Gene |
ENSMUSG00000017922 |
Gene Name |
prolactin family 3, subfamily c, member 1 |
Synonyms |
Prlpj, PLP I, PLP-J |
MMRRC Submission |
043232-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.056)
|
Stock # |
R5863 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
13 |
Chromosomal Location |
27380643-27387732 bp(+) (GRCm39) |
Type of Mutation |
makesense |
DNA Base Change (assembly) |
T to A
at 27387593 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Stop codon to Lysine
at position 193
(*193K)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000136890
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000018066]
[ENSMUST00000110364]
[ENSMUST00000178072]
|
AlphaFold |
Q9QUN5 |
Predicted Effect |
probably null
Transcript: ENSMUST00000018066
AA Change: *213K
|
SMART Domains |
Protein: ENSMUSP00000018066 Gene: ENSMUSG00000017922 AA Change: *213K
Domain | Start | End | E-Value | Type |
Pfam:Hormone_1
|
16 |
212 |
1.5e-31 |
PFAM |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000110364
AA Change: *193K
|
SMART Domains |
Protein: ENSMUSP00000105993 Gene: ENSMUSG00000017922 AA Change: *193K
Domain | Start | End | E-Value | Type |
Pfam:Hormone_1
|
2 |
192 |
2.9e-31 |
PFAM |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000178072
AA Change: *193K
|
SMART Domains |
Protein: ENSMUSP00000136890 Gene: ENSMUSG00000017922 AA Change: *193K
Domain | Start | End | E-Value | Type |
Pfam:Hormone_1
|
2 |
192 |
2.9e-31 |
PFAM |
|
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.7%
- 20x: 93.4%
|
Validation Efficiency |
|
MGI Phenotype |
PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced female fertility and a male reproductive tract phenotype that includes enlarged testes and seminal vesicles, increased sperm count, increased serum testosterone and luteinizing hormone levels, and abnormal adult Leydig cell differentiation. [provided by MGI curators]
|
Allele List at MGI |
All alleles(1) : Targeted, knock-out(1) |
Other mutations in this stock |
Total: 44 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aacs |
T |
C |
5: 125,580,287 (GRCm39) |
I204T |
possibly damaging |
Het |
Abcc2 |
A |
G |
19: 43,786,575 (GRCm39) |
I136V |
probably benign |
Het |
Adam6a |
T |
C |
12: 113,507,987 (GRCm39) |
I120T |
probably benign |
Het |
Add3 |
C |
A |
19: 53,222,301 (GRCm39) |
L303I |
probably benign |
Het |
Anln |
A |
G |
9: 22,249,280 (GRCm39) |
L149P |
probably damaging |
Het |
Arhgef4 |
A |
G |
1: 34,761,926 (GRCm39) |
E394G |
unknown |
Het |
Asns |
G |
A |
6: 7,675,443 (GRCm39) |
Q520* |
probably null |
Het |
Auh |
T |
G |
13: 53,052,694 (GRCm39) |
N141T |
probably benign |
Het |
B3galt2 |
G |
A |
1: 143,522,104 (GRCm39) |
R80Q |
probably benign |
Het |
Bcl9 |
T |
C |
3: 97,117,666 (GRCm39) |
T343A |
probably benign |
Het |
C3 |
T |
A |
17: 57,530,141 (GRCm39) |
I487F |
probably benign |
Het |
Cast |
T |
C |
13: 74,884,875 (GRCm39) |
K326E |
probably damaging |
Het |
Ccdc185 |
T |
A |
1: 182,576,122 (GRCm39) |
H189L |
possibly damaging |
Het |
Cep112 |
A |
G |
11: 108,497,058 (GRCm39) |
E51G |
probably damaging |
Het |
Cpvl |
G |
A |
6: 53,850,413 (GRCm39) |
P475S |
probably damaging |
Het |
Cstf2t |
G |
T |
19: 31,060,477 (GRCm39) |
L4F |
probably damaging |
Het |
Dido1 |
A |
G |
2: 180,303,566 (GRCm39) |
V1446A |
probably benign |
Het |
Dlg2 |
T |
A |
7: 91,360,987 (GRCm39) |
M35K |
probably benign |
Het |
Dnah12 |
C |
T |
14: 26,576,878 (GRCm39) |
L3043F |
probably damaging |
Het |
Fam135a |
A |
G |
1: 24,053,863 (GRCm39) |
S1225P |
possibly damaging |
Het |
Fhod3 |
T |
C |
18: 25,258,810 (GRCm39) |
F1443S |
probably benign |
Het |
Flacc1 |
G |
T |
1: 58,730,908 (GRCm39) |
H49Q |
probably benign |
Het |
Gm14226 |
C |
A |
2: 154,866,211 (GRCm39) |
T56N |
probably benign |
Het |
Itgb4 |
C |
T |
11: 115,881,748 (GRCm39) |
R766W |
probably damaging |
Het |
Kcnj8 |
T |
A |
6: 142,511,414 (GRCm39) |
I398F |
probably benign |
Het |
Khdrbs1 |
G |
A |
4: 129,616,493 (GRCm39) |
R284C |
probably damaging |
Het |
Nog |
A |
G |
11: 89,192,356 (GRCm39) |
L164P |
probably damaging |
Het |
Or13a18 |
G |
A |
7: 140,190,544 (GRCm39) |
G155D |
probably damaging |
Het |
Or8c20 |
T |
C |
9: 38,261,083 (GRCm39) |
S235P |
probably benign |
Het |
Pkhd1 |
T |
A |
1: 20,590,434 (GRCm39) |
Q1771L |
possibly damaging |
Het |
Prpf4b |
T |
A |
13: 35,083,111 (GRCm39) |
I829N |
possibly damaging |
Het |
Rassf1 |
C |
T |
9: 107,435,023 (GRCm39) |
P103S |
probably damaging |
Het |
Rdh16f2 |
A |
C |
10: 127,712,256 (GRCm39) |
I238L |
probably benign |
Het |
Sdk2 |
G |
T |
11: 113,725,810 (GRCm39) |
D1146E |
probably damaging |
Het |
Slc16a3 |
T |
C |
11: 120,848,779 (GRCm39) |
F412L |
probably benign |
Het |
Slc24a1 |
T |
C |
9: 64,835,824 (GRCm39) |
T768A |
unknown |
Het |
Stk32a |
A |
G |
18: 43,448,209 (GRCm39) |
N396S |
probably benign |
Het |
Ston1 |
T |
C |
17: 88,943,373 (GRCm39) |
S260P |
possibly damaging |
Het |
Tmem135 |
A |
G |
7: 88,797,176 (GRCm39) |
|
probably null |
Het |
Tmem30c |
A |
G |
16: 57,090,418 (GRCm39) |
V263A |
probably benign |
Het |
Ttn |
T |
A |
2: 76,587,102 (GRCm39) |
T21632S |
probably damaging |
Het |
Ube2w |
A |
G |
1: 16,655,531 (GRCm39) |
I141T |
probably damaging |
Het |
Zbtb47 |
A |
G |
9: 121,596,596 (GRCm39) |
S651G |
probably benign |
Het |
Zscan20 |
A |
T |
4: 128,480,141 (GRCm39) |
C783* |
probably null |
Het |
|
Other mutations in Prl3c1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00337:Prl3c1
|
APN |
13 |
27,384,746 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL00567:Prl3c1
|
APN |
13 |
27,384,695 (GRCm39) |
missense |
possibly damaging |
0.82 |
IGL01105:Prl3c1
|
APN |
13 |
27,386,408 (GRCm39) |
missense |
probably benign |
0.04 |
IGL02985:Prl3c1
|
APN |
13 |
27,383,370 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL03013:Prl3c1
|
APN |
13 |
27,383,349 (GRCm39) |
missense |
probably benign |
0.01 |
G1Funyon:Prl3c1
|
UTSW |
13 |
27,383,168 (GRCm39) |
unclassified |
probably benign |
|
H8930:Prl3c1
|
UTSW |
13 |
27,384,689 (GRCm39) |
nonsense |
probably null |
|
R0437:Prl3c1
|
UTSW |
13 |
27,383,447 (GRCm39) |
missense |
probably benign |
0.09 |
R0630:Prl3c1
|
UTSW |
13 |
27,384,674 (GRCm39) |
splice site |
probably benign |
|
R1277:Prl3c1
|
UTSW |
13 |
27,387,555 (GRCm39) |
missense |
probably damaging |
1.00 |
R2064:Prl3c1
|
UTSW |
13 |
27,380,720 (GRCm39) |
critical splice donor site |
probably null |
|
R2121:Prl3c1
|
UTSW |
13 |
27,383,325 (GRCm39) |
splice site |
probably null |
|
R4752:Prl3c1
|
UTSW |
13 |
27,387,508 (GRCm39) |
missense |
probably benign |
0.11 |
R4959:Prl3c1
|
UTSW |
13 |
27,386,471 (GRCm39) |
splice site |
probably null |
|
R7912:Prl3c1
|
UTSW |
13 |
27,383,367 (GRCm39) |
missense |
probably benign |
0.02 |
R7913:Prl3c1
|
UTSW |
13 |
27,383,393 (GRCm39) |
missense |
probably benign |
0.00 |
R8157:Prl3c1
|
UTSW |
13 |
27,383,330 (GRCm39) |
missense |
probably damaging |
1.00 |
R8301:Prl3c1
|
UTSW |
13 |
27,383,168 (GRCm39) |
unclassified |
probably benign |
|
R8352:Prl3c1
|
UTSW |
13 |
27,386,385 (GRCm39) |
missense |
probably benign |
0.01 |
R8452:Prl3c1
|
UTSW |
13 |
27,386,385 (GRCm39) |
missense |
probably benign |
0.01 |
R8898:Prl3c1
|
UTSW |
13 |
27,387,578 (GRCm39) |
missense |
possibly damaging |
0.93 |
Z1177:Prl3c1
|
UTSW |
13 |
27,387,484 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
Predicted Primers |
PCR Primer
(F):5'- GTTTAGATTCAGCCTGGAATTGAAG -3'
(R):5'- TCCAAGCCCTACTTATTGGTG -3'
Sequencing Primer
(F):5'- TCAGCCTGGAATTGAAGAAAATAAC -3'
(R):5'- CTTTATGCTGCAGGAACTCAAGG -3'
|
Posted On |
2017-10-20 |