Mutagenetix > Incidental Mutation

Incidental Mutation 'R6241:Traip'

505248

Institutional Source

Beutler Lab

Gene Symbol

Traip

Ensembl Gene

ENSMUSG00000032586

Gene Name

TRAF-interacting protein

Synonyms

Trip

MMRRC Submission

044402-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R6241 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

107828158-107849469 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 107845933 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Tyrosine at position 342 (C342Y)

Ref Sequence

ENSEMBL: ENSMUSP00000040001 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049348]

AlphaFold

Q8VIG6

Predicted Effect

probably benign
Transcript: ENSMUST00000049348
AA Change: C342Y

PolyPhen 2 Score 0.333 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000040001
Gene: ENSMUSG00000032586
AA Change: C342Y

Domain	Start	End	E-Value	Type
RING	7	49	6.68e-6	SMART
coiled coil region	70	278	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000194191

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000194538

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000195803

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.2%
20x: 95.0%

Validation Efficiency

98% (51/52)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that contains an N-terminal RING finger motif and a putative coiled-coil domain. A similar murine protein interacts with TNFR-associated factor 1 (TRAF1), TNFR-associated factor 2 (TRAF2), and cylindromatosis. The interaction with TRAF2 inhibits TRAF2-mediated nuclear factor kappa-B, subunit 1 activation that is required for cell activation and protection against apoptosis. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele exhibit embryonic lethality at prior to E8.5, embryonic growth retardation, decreased embryonic size, decreased cell proliferation and increased apoptosis. [provided by MGI curators]

Allele List at MGI

All alleles(10) : Targeted(1) Gene trapped(9)

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	A	G	6: 121,623,788 (GRCm39)	I385V	probably benign	Het
Ablim2	A	G	5: 36,032,241 (GRCm39)	D622G	probably damaging	Het
Acsbg1	A	T	9: 54,549,946 (GRCm39)	S86T	probably damaging	Het
Adam34l	T	A	8: 44,079,133 (GRCm39)	I364L	probably benign	Het
Ank2	A	C	3: 126,846,397 (GRCm39)	D199E	probably damaging	Het
Art2a	T	A	7: 101,204,452 (GRCm39)	M29L	probably benign	Het
Bbs2	C	A	8: 94,824,863 (GRCm39)		probably null	Het
Brwd1	A	T	16: 95,815,074 (GRCm39)	I1402N	probably damaging	Het
C1qtnf9	C	A	14: 61,017,069 (GRCm39)	P200T	possibly damaging	Het
Ciita	T	C	16: 10,329,767 (GRCm39)	Y684H	probably damaging	Het
Dennd1c	T	C	17: 57,373,272 (GRCm39)	N734D	probably benign	Het
Depdc1b	A	T	13: 108,460,653 (GRCm39)	I88F	possibly damaging	Het
Dsg2	A	G	18: 20,723,274 (GRCm39)		probably null	Het
Foxp2	A	G	6: 15,394,761 (GRCm39)	T154A	probably damaging	Het
Gmeb1	A	T	4: 131,969,688 (GRCm39)	V95D	possibly damaging	Het
Gmeb1	A	G	4: 131,973,324 (GRCm39)	S62P	probably benign	Het
Golga5	T	A	12: 102,438,732 (GRCm39)	V149D	probably damaging	Het
H1f7	A	C	15: 98,154,652 (GRCm39)	S166A	unknown	Het
Hivep1	T	C	13: 42,311,846 (GRCm39)	L1362P	probably benign	Het
Ift81	T	C	5: 122,740,414 (GRCm39)	M205V	probably benign	Het
Iglv3	T	A	16: 19,059,968 (GRCm39)	Q120L	possibly damaging	Het
Ints9	C	T	14: 65,217,659 (GRCm39)	T62I	possibly damaging	Het
Itga1	G	T	13: 115,096,673 (GRCm39)		probably null	Het
Katnip	C	T	7: 125,472,006 (GRCm39)	H1532Y	probably benign	Het
Krt77	A	C	15: 101,773,988 (GRCm39)	I222S	probably damaging	Het
Mrps25	A	G	6: 92,160,819 (GRCm39)		probably null	Het
Mrps27	A	G	13: 99,548,754 (GRCm39)	T297A	probably benign	Het
Mup15	A	T	4: 61,357,850 (GRCm39)	L7Q	unknown	Het
Naip1	T	A	13: 100,562,169 (GRCm39)	I999F	probably damaging	Het
Ndst1	A	G	18: 60,836,901 (GRCm39)	F387L	probably damaging	Het
Nudt9	T	C	5: 104,202,151 (GRCm39)	S71P	probably damaging	Het
Or14c41	C	A	7: 86,235,245 (GRCm39)	A254D	probably benign	Het
Or2b4	A	G	17: 38,116,432 (GRCm39)	Y132C	probably damaging	Het
Or5al1	T	G	2: 85,990,380 (GRCm39)	E111D	probably damaging	Het
Pak4	C	T	7: 28,264,690 (GRCm39)	V71I	possibly damaging	Het
Pcolce	A	C	5: 137,603,496 (GRCm39)	S446A	probably benign	Het
Per2	T	A	1: 91,349,251 (GRCm39)	N1040I	probably damaging	Het
Pla2g6	A	T	15: 79,188,592 (GRCm39)	S422T	probably benign	Het
Pla2r1	G	T	2: 60,332,543 (GRCm39)		probably null	Het
Plcb4	T	C	2: 135,752,094 (GRCm39)	V100A	possibly damaging	Het
Polr1d	C	T	5: 147,015,533 (GRCm39)	T72M	probably benign	Het
Psd3	A	C	8: 68,270,791 (GRCm39)		probably benign	Het
Radil	T	C	5: 142,480,697 (GRCm39)	E586G	probably damaging	Het
Rnf150	A	G	8: 83,591,093 (GRCm39)	N152S	possibly damaging	Het
Serpina1b	T	A	12: 103,695,515 (GRCm39)		probably null	Het
Setd3	C	T	12: 108,124,114 (GRCm39)	E192K	probably benign	Het
Ssu2	G	A	6: 112,351,781 (GRCm39)	H315Y	probably damaging	Het
Taok3	T	A	5: 117,410,262 (GRCm39)	M818K	probably benign	Het
Tmem131l	T	C	3: 83,829,471 (GRCm39)	N1062S	probably benign	Het
Tmx4	C	T	2: 134,481,425 (GRCm39)		probably benign	Het
Traj9	G	T	14: 54,446,890 (GRCm39)		probably benign	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Vegfc	T	C	8: 54,634,289 (GRCm39)	S323P	probably benign	Het
Vinac1	T	C	2: 128,879,301 (GRCm39)	D875G	possibly damaging	Het

Other mutations in Traip

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Traip	APN	9	107,847,749 (GRCm39)	missense	probably benign	0.15
IGL01457:Traip	APN	9	107,847,671 (GRCm39)	missense	probably benign	0.00
IGL01597:Traip	APN	9	107,833,123 (GRCm39)	critical splice donor site	probably null
IGL02197:Traip	APN	9	107,845,936 (GRCm39)	missense	possibly damaging	0.89
IGL03077:Traip	APN	9	107,840,125 (GRCm39)	unclassified	probably benign
IGL03226:Traip	APN	9	107,848,192 (GRCm39)	missense	probably damaging	0.97
BB008:Traip	UTSW	9	107,848,241 (GRCm39)	missense	probably benign	0.04
BB018:Traip	UTSW	9	107,848,241 (GRCm39)	missense	probably benign	0.04
P0016:Traip	UTSW	9	107,845,855 (GRCm39)	missense	possibly damaging	0.93
R1693:Traip	UTSW	9	107,847,229 (GRCm39)	missense	probably damaging	0.99
R2054:Traip	UTSW	9	107,840,118 (GRCm39)	missense	probably benign	0.08
R4396:Traip	UTSW	9	107,836,686 (GRCm39)	missense	probably benign	0.02
R4617:Traip	UTSW	9	107,847,218 (GRCm39)	missense	probably benign	0.00
R6151:Traip	UTSW	9	107,847,818 (GRCm39)	critical splice donor site	probably null
R6920:Traip	UTSW	9	107,838,240 (GRCm39)	nonsense	probably null
R7177:Traip	UTSW	9	107,838,184 (GRCm39)	missense	possibly damaging	0.62
R7191:Traip	UTSW	9	107,847,216 (GRCm39)	missense	probably benign
R7504:Traip	UTSW	9	107,838,743 (GRCm39)	missense	probably benign	0.05
R7931:Traip	UTSW	9	107,848,241 (GRCm39)	missense	probably benign	0.04
R7939:Traip	UTSW	9	107,833,077 (GRCm39)	missense	probably benign	0.21
R8228:Traip	UTSW	9	107,838,265 (GRCm39)	missense	probably benign	0.16
R9059:Traip	UTSW	9	107,840,549 (GRCm39)	missense	probably benign	0.01
R9511:Traip	UTSW	9	107,838,785 (GRCm39)	missense	probably damaging	1.00
R9548:Traip	UTSW	9	107,833,099 (GRCm39)	missense	probably damaging	1.00
X0018:Traip	UTSW	9	107,838,855 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CACCGCAGTCCTGAATAATGAG -3'
(R):5'- CATCGTCCTGAGGCTTGTTAG -3'

Sequencing Primer
(F):5'- ATGAGATATTTTGTCTGCCTTCAGC -3'
(R):5'- CCTGAGGCTTGTTAGGGTTAAAGAAC -3'

Posted On

2018-02-28