Incidental Mutation 'R6929:C2'
| ID |
539915 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
C2
|
| Ensembl Gene |
ENSMUSG00000024371 |
| Gene Name |
complement C2 |
| Synonyms |
classical-complement pathway C3/C5 convertase |
| MMRRC Submission |
045007-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.147)
|
| Stock # |
R6929 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
17 |
| Chromosomal Location |
35081578-35101076 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 35083323 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Phenylalanine
at position 242
(I242F)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000120009
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000025229]
[ENSMUST00000025230]
[ENSMUST00000128767]
[ENSMUST00000146299]
[ENSMUST00000148431]
[ENSMUST00000152417]
[ENSMUST00000154526]
[ENSMUST00000176203]
|
| AlphaFold |
P21180 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000025229
|
| SMART Domains |
Protein: ENSMUSP00000025229
Gene: ENSMUSG00000090231
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
8 |
23 |
N/A |
INTRINSIC |
|
CCP
|
36 |
88 |
5.15e-1 |
SMART |
|
CCP
|
102 |
157 |
4.62e-15 |
SMART |
|
CCP
|
164 |
217 |
2.06e-12 |
SMART |
|
VWA
|
267 |
472 |
1.07e-40 |
SMART |
|
Tryp_SPc
|
480 |
751 |
2.53e-30 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000025230
AA Change: I519F
PolyPhen 2
Score 0.577 (Sensitivity: 0.88; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000025230
Gene: ENSMUSG00000024371
AA Change: I519F
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
18 |
N/A |
INTRINSIC |
|
Blast:CCP
|
22 |
71 |
8e-24 |
BLAST |
|
low complexity region
|
72 |
83 |
N/A |
INTRINSIC |
|
CCP
|
94 |
149 |
1.34e-11 |
SMART |
|
CCP
|
156 |
210 |
1.89e-11 |
SMART |
|
Blast:VWA
|
219 |
245 |
1e-7 |
BLAST |
|
VWA
|
259 |
464 |
1.32e-31 |
SMART |
|
Tryp_SPc
|
468 |
747 |
4.43e-26 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000128767
|
| SMART Domains |
Protein: ENSMUSP00000119977
Gene: ENSMUSG00000090231
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
21 |
N/A |
INTRINSIC |
|
CCP
|
34 |
86 |
5.15e-1 |
SMART |
|
CCP
|
100 |
155 |
4.62e-15 |
SMART |
|
CCP
|
162 |
215 |
2.06e-12 |
SMART |
|
VWA
|
265 |
470 |
1.07e-40 |
SMART |
|
Tryp_SPc
|
478 |
749 |
2.53e-30 |
SMART |
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000129891
AA Change: I135F
|
| SMART Domains |
Protein: ENSMUSP00000120864
Gene: ENSMUSG00000092511
AA Change: I135F
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:VWA
|
2 |
77 |
8e-7 |
BLAST |
|
Tryp_SPc
|
85 |
365 |
5.69e-8 |
SMART |
|
CCP
|
310 |
365 |
4.62e-15 |
SMART |
|
CCP
|
372 |
425 |
2.06e-12 |
SMART |
|
VWA
|
475 |
680 |
1.07e-40 |
SMART |
|
Tryp_SPc
|
688 |
959 |
2.53e-30 |
SMART |
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000134300
AA Change: I22F
|
| SMART Domains |
Protein: ENSMUSP00000114241
Gene: ENSMUSG00000024371
AA Change: I22F
| Domain | Start | End | E-Value | Type |
|---|
|
Tryp_SPc
|
3 |
148 |
6.48e-4 |
SMART |
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000146299
AA Change: I366F
|
| SMART Domains |
Protein: ENSMUSP00000117677
Gene: ENSMUSG00000092511
AA Change: I366F
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
18 |
N/A |
INTRINSIC |
|
low complexity region
|
72 |
83 |
N/A |
INTRINSIC |
|
CCP
|
94 |
148 |
1.89e-11 |
SMART |
|
VWA
|
103 |
311 |
1.74e-1 |
SMART |
|
Tryp_SPc
|
315 |
547 |
1.49e-7 |
SMART |
|
CCP
|
549 |
601 |
5.15e-1 |
SMART |
|
CCP
|
615 |
670 |
4.62e-15 |
SMART |
|
CCP
|
677 |
730 |
2.06e-12 |
SMART |
|
VWA
|
780 |
985 |
1.07e-40 |
SMART |
|
Tryp_SPc
|
993 |
1264 |
2.53e-30 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000148431
AA Change: I242F
PolyPhen 2
Score 0.678 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000120009
Gene: ENSMUSG00000024371
AA Change: I242F
| Domain | Start | End | E-Value | Type |
|---|
|
VWA
|
33 |
187 |
2.33e0 |
SMART |
|
Tryp_SPc
|
191 |
470 |
4.43e-26 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000152417
AA Change: I382F
PolyPhen 2
Score 0.577 (Sensitivity: 0.88; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000123536
Gene: ENSMUSG00000024371
AA Change: I382F
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
13 |
N/A |
INTRINSIC |
|
CCP
|
19 |
73 |
1.89e-11 |
SMART |
|
Blast:VWA
|
82 |
108 |
2e-7 |
BLAST |
|
VWA
|
122 |
327 |
1.32e-31 |
SMART |
|
Tryp_SPc
|
331 |
610 |
4.43e-26 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000154526
|
| SMART Domains |
Protein: ENSMUSP00000120990
Gene: ENSMUSG00000090231
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
21 |
N/A |
INTRINSIC |
|
CCP
|
34 |
86 |
5.15e-1 |
SMART |
|
CCP
|
100 |
155 |
4.62e-15 |
SMART |
|
CCP
|
162 |
215 |
2.06e-12 |
SMART |
|
VWA
|
265 |
470 |
1.07e-40 |
SMART |
|
Tryp_SPc
|
478 |
711 |
5.03e-5 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000176203
|
| SMART Domains |
Protein: ENSMUSP00000135660
Gene: ENSMUSG00000090231
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
8 |
23 |
N/A |
INTRINSIC |
|
CCP
|
36 |
88 |
5.15e-1 |
SMART |
|
CCP
|
102 |
157 |
4.62e-15 |
SMART |
|
CCP
|
164 |
217 |
2.06e-12 |
SMART |
|
VWA
|
267 |
472 |
1.07e-40 |
SMART |
|
Tryp_SPc
|
480 |
713 |
5.03e-5 |
SMART |
|
| Meta Mutation Damage Score |
0.1795 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.2%
- 20x: 97.4%
|
| Validation Efficiency |
92% (35/38) |
| MGI Phenotype |
FUNCTION: This gene encodes component C2 of the classical pathway of the complement system. The encoded protein undergoes proteolytic processing mediated by component C1 resulting in C2a and C2b fragments. C2a fragment, in turn, selectively cleaves components C3 and C5 of the complement system. Mice lacking the encoded protein are found to be more susceptible to bacterial infections. Mutations in the human homolog of this gene are associated with disorders such as systemic lupus erythematosus, Henoch-Schonlein purpura, or polymyositis. [provided by RefSeq, Mar 2015]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts13 |
A |
T |
2: 26,896,275 (GRCm39) |
R1223* |
probably null |
Het |
| Adgrb3 |
A |
T |
1: 25,150,852 (GRCm39) |
L1127* |
probably null |
Het |
| Ankrd17 |
A |
T |
5: 90,433,384 (GRCm39) |
V727D |
possibly damaging |
Het |
| Ankub1 |
A |
T |
3: 57,572,854 (GRCm39) |
C289* |
probably null |
Het |
| C2cd3 |
T |
C |
7: 100,100,826 (GRCm39) |
L653P |
probably damaging |
Het |
| Cacna1b |
A |
G |
2: 24,522,022 (GRCm39) |
V1696A |
probably damaging |
Het |
| Cep295 |
A |
G |
9: 15,244,358 (GRCm39) |
I1366T |
probably damaging |
Het |
| Chd9 |
T |
C |
8: 91,769,573 (GRCm39) |
L2553P |
probably damaging |
Het |
| Cited4 |
C |
A |
4: 120,524,244 (GRCm39) |
T82K |
probably benign |
Het |
| Dnah6 |
A |
T |
6: 73,021,756 (GRCm39) |
M3470K |
probably damaging |
Het |
| Exosc3 |
G |
T |
4: 45,320,482 (GRCm39) |
P37Q |
probably damaging |
Het |
| Fam120b |
C |
A |
17: 15,643,290 (GRCm39) |
Q690K |
possibly damaging |
Het |
| Fyb1 |
T |
C |
15: 6,668,388 (GRCm39) |
I527T |
probably damaging |
Het |
| Gm32742 |
A |
G |
9: 51,065,579 (GRCm39) |
L459P |
probably benign |
Het |
| Gm45861 |
A |
G |
8: 28,014,462 (GRCm39) |
D655G |
unknown |
Het |
| Ifi203 |
A |
G |
1: 173,756,340 (GRCm39) |
|
probably benign |
Het |
| Ifnar2 |
T |
A |
16: 91,190,766 (GRCm39) |
L93* |
probably null |
Het |
| Kdr |
A |
G |
5: 76,138,764 (GRCm39) |
V22A |
probably benign |
Het |
| Llgl1 |
C |
T |
11: 60,601,179 (GRCm39) |
Q706* |
probably null |
Het |
| Lrrc9 |
A |
T |
12: 72,497,546 (GRCm39) |
K121N |
probably benign |
Het |
| Lyst |
T |
C |
13: 13,917,909 (GRCm39) |
F3323S |
probably damaging |
Het |
| Mc4r |
A |
G |
18: 66,992,253 (GRCm39) |
Y287H |
probably damaging |
Het |
| Nlrp4e |
A |
C |
7: 23,036,156 (GRCm39) |
|
probably null |
Het |
| Or52z12 |
A |
T |
7: 103,233,651 (GRCm39) |
I141F |
probably damaging |
Het |
| Or8b42 |
A |
G |
9: 38,342,444 (GRCm39) |
I289V |
probably benign |
Het |
| Pear1 |
T |
A |
3: 87,666,872 (GRCm39) |
K38* |
probably null |
Het |
| Pik3c2g |
G |
A |
6: 139,903,502 (GRCm39) |
R585Q |
possibly damaging |
Het |
| Prpf40a |
A |
G |
2: 53,034,875 (GRCm39) |
V771A |
possibly damaging |
Het |
| Rnd3 |
G |
T |
2: 51,027,187 (GRCm39) |
D103E |
probably damaging |
Het |
| Sfpq |
GCCGCCGCAGCAGCCTCCGCCGCAGCAGCC |
GCCGCCGCAGCAGCC |
4: 126,915,419 (GRCm39) |
|
probably benign |
Het |
| Spats2l |
A |
T |
1: 57,918,695 (GRCm39) |
N43I |
probably damaging |
Het |
| Tmem202 |
C |
A |
9: 59,426,504 (GRCm39) |
G221C |
probably benign |
Het |
| Ubiad1 |
T |
C |
4: 148,528,579 (GRCm39) |
D110G |
probably damaging |
Het |
| Ulk4 |
A |
T |
9: 120,903,081 (GRCm39) |
V1132D |
probably benign |
Het |
| Vmn2r118 |
C |
T |
17: 55,917,440 (GRCm39) |
M357I |
probably benign |
Het |
| Zfp663 |
G |
C |
2: 165,195,178 (GRCm39) |
P347R |
probably benign |
Het |
|
| Other mutations in C2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02191:C2
|
APN |
17 |
35,085,539 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02249:C2
|
APN |
17 |
35,083,484 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02568:C2
|
APN |
17 |
35,083,325 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
IGL03013:C2
|
APN |
17 |
35,091,435 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R0142:C2
|
UTSW |
17 |
35,092,504 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R0619:C2
|
UTSW |
17 |
35,091,479 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1401:C2
|
UTSW |
17 |
35,091,457 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R1639:C2
|
UTSW |
17 |
35,091,379 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1808:C2
|
UTSW |
17 |
35,083,508 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2133:C2
|
UTSW |
17 |
35,098,878 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2860:C2
|
UTSW |
17 |
35,082,854 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R2861:C2
|
UTSW |
17 |
35,082,854 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R3882:C2
|
UTSW |
17 |
35,092,465 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4571:C2
|
UTSW |
17 |
35,082,635 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4622:C2
|
UTSW |
17 |
35,082,650 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5611:C2
|
UTSW |
17 |
35,091,360 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5767:C2
|
UTSW |
17 |
35,095,432 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R6327:C2
|
UTSW |
17 |
35,083,079 (GRCm39) |
missense |
probably benign |
0.41 |
|
R6448:C2
|
UTSW |
17 |
35,082,335 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R6518:C2
|
UTSW |
17 |
35,083,094 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7324:C2
|
UTSW |
17 |
35,100,664 (GRCm39) |
missense |
probably benign |
0.13 |
|
R7446:C2
|
UTSW |
17 |
35,094,986 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7456:C2
|
UTSW |
17 |
35,083,558 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7479:C2
|
UTSW |
17 |
35,082,441 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7807:C2
|
UTSW |
17 |
35,095,347 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R7943:C2
|
UTSW |
17 |
35,091,354 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9235:C2
|
UTSW |
17 |
35,083,845 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9397:C2
|
UTSW |
17 |
35,094,965 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9452:C2
|
UTSW |
17 |
35,095,319 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9605:C2
|
UTSW |
17 |
35,081,958 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
| Predicted Primers |
PCR Primer
(F):5'- TTGCATGGACATTAAACCCTGG -3'
(R):5'- CCTTGGCAAGTCACCTTTAAGG -3'
Sequencing Primer
(F):5'- TGGGGCAATTATCACGTCC -3'
(R):5'- CCTTTAAGGTATCAGGAAGGAGG -3'
|
| Posted On |
2018-11-06 |
Incidental Mutation