Mutagenetix > Incidental Mutation

Incidental Mutation 'R7167:Rtp3'

557996

Institutional Source

Beutler Lab

Gene Symbol

Rtp3

Ensembl Gene

ENSMUSG00000066319

Gene Name

receptor transporter protein 3

Synonyms

Tmem7

MMRRC Submission

045228-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.048) question?

Stock #

R7167 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

110814003-110818781 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 110815772 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 198 (T198S)

Ref Sequence

ENSEMBL: ENSMUSP00000081985 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035076] [ENSMUST00000084922] [ENSMUST00000198702] [ENSMUST00000199891]

AlphaFold

Q5QGU6

Predicted Effect

probably benign
Transcript: ENSMUST00000035076

SMART Domains

Protein: ENSMUSP00000035076
Gene: ENSMUSG00000032495

Domain	Start	End	E-Value	Type
Blast:LRR	143	165	5e-7	BLAST
LRR_TYP	166	189	4.87e-4	SMART
LRR	236	258	1.41e1	SMART
LRR	259	282	2.27e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000084922
AA Change: T198S

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000081985
Gene: ENSMUSG00000066319
AA Change: T198S

Domain	Start	End	E-Value	Type
zf-3CxxC	52	164	2.13e-52	SMART
low complexity region	356	404	N/A	INTRINSIC
low complexity region	458	474	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000198702

SMART Domains

Protein: ENSMUSP00000143100
Gene: ENSMUSG00000066319

Domain	Start	End	E-Value	Type
Pfam:zf-3CxxC	52	81	2.5e-6	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000199891

SMART Domains

Protein: ENSMUSP00000143305
Gene: ENSMUSG00000066319

Domain	Start	End	E-Value	Type
zf-3CxxC	52	164	2.13e-52	SMART
low complexity region	356	404	N/A	INTRINSIC
low complexity region	458	474	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

94% (65/69)

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	T	C	6: 121,624,930 (GRCm39)	V436A	probably benign	Het
Abcc5	T	C	16: 20,224,251 (GRCm39)	T111A	possibly damaging	Het
Acsbg2	T	A	17: 57,164,000 (GRCm39)	D203V	probably benign	Het
Alpk2	G	T	18: 65,440,049 (GRCm39)	T448K	probably benign	Het
Arhgef2	A	G	3: 88,551,179 (GRCm39)	N780S	possibly damaging	Het
Atxn2l	T	C	7: 126,098,394 (GRCm39)	N252S	possibly damaging	Het
Bmpr1b	A	T	3: 141,568,841 (GRCm39)	L163Q	probably benign	Het
Clca3a2	T	C	3: 144,803,545 (GRCm39)	R100G	probably benign	Het
Col2a1	A	G	15: 97,898,337 (GRCm39)	I79T	unknown	Het
Csmd1	A	G	8: 15,976,524 (GRCm39)	V2898A	probably benign	Het
Cux1	G	A	5: 136,338,895 (GRCm39)		probably null	Het
Cyp2u1	A	G	3: 131,096,773 (GRCm39)	S2P	probably benign	Het
Daam1	C	A	12: 72,035,678 (GRCm39)	H958N	probably damaging	Het
Dnah7a	C	T	1: 53,542,935 (GRCm39)	V2412I	probably benign	Het
Ergic2	T	C	6: 148,108,133 (GRCm39)	R2G	probably damaging	Het
Fat2	T	C	11: 55,175,827 (GRCm39)	T1629A	possibly damaging	Het
Ftl1	T	A	7: 45,109,202 (GRCm39)		probably benign	Het
Fut8	T	C	12: 77,495,406 (GRCm39)	V332A	possibly damaging	Het
Gm28363	T	C	1: 117,655,119 (GRCm39)	S113P	probably damaging	Het
Hfe	A	T	13: 23,892,052 (GRCm39)	V104E	probably damaging	Het
Ifih1	A	T	2: 62,429,240 (GRCm39)	N899K	probably benign	Het
Krt75	A	G	15: 101,476,750 (GRCm39)	S380P	possibly damaging	Het
Meiob	T	G	17: 25,055,419 (GRCm39)	F409V	probably damaging	Het
Mkrn2os	A	T	6: 115,562,474 (GRCm39)	I163N	probably damaging	Het
Nanos1	G	T	19: 60,745,046 (GRCm39)	G115W	probably damaging	Het
Naprt	C	T	15: 75,764,461 (GRCm39)	A276T	probably damaging	Het
Oas1e	G	T	5: 120,933,487 (GRCm39)	T26N	probably benign	Het
Oog2	T	G	4: 143,921,745 (GRCm39)	D218E	probably benign	Het
Optn	T	C	2: 5,047,294 (GRCm39)	N207S	probably benign	Het
Or13a20	T	A	7: 140,232,466 (GRCm39)	C191*	probably null	Het
Or1l8	T	C	2: 36,817,533 (GRCm39)	I198V	probably benign	Het
Or4g16	T	C	2: 111,136,793 (GRCm39)	M81T	probably benign	Het
Or4p18	A	G	2: 88,232,552 (GRCm39)	V242A	possibly damaging	Het
Or6c63-ps1	T	G	10: 128,899,141 (GRCm39)	Q245P	probably damaging	Het
Or6c66b	T	C	10: 129,376,607 (GRCm39)	L67P	possibly damaging	Het
Or8g4	T	C	9: 39,661,865 (GRCm39)	F61S	probably damaging	Het
Oxnad1	G	T	14: 31,822,976 (GRCm39)	E236*	probably null	Het
Pcdha3	G	A	18: 37,080,046 (GRCm39)	A263T	probably damaging	Het
Pex13	A	T	11: 23,605,472 (GRCm39)	W253R	possibly damaging	Het
Pip5k1b	T	A	19: 24,374,433 (GRCm39)	E49D	probably benign	Het
Plau	C	A	14: 20,889,518 (GRCm39)	F194L	possibly damaging	Het
Ppm1n	A	G	7: 19,013,666 (GRCm39)	L95S	probably damaging	Het
Pramel40	G	A	5: 94,464,984 (GRCm39)	A457T	possibly damaging	Het
Radil	G	T	5: 142,471,260 (GRCm39)		probably null	Het
Ralgapa2	C	T	2: 146,190,374 (GRCm39)	M1266I	probably benign	Het
Reln	A	T	5: 22,147,618 (GRCm39)	L2444Q	probably damaging	Het
Rims2	T	C	15: 39,300,473 (GRCm39)	V260A	probably benign	Het
Rnase2b	T	A	14: 51,400,222 (GRCm39)	V101E	probably damaging	Het
Shisal2b	A	G	13: 105,000,166 (GRCm39)	V19A	probably damaging	Het
Smad3	T	A	9: 63,573,435 (GRCm39)	D201V	probably benign	Het
Son	AGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	AGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	16: 91,457,222 (GRCm39)		probably benign	Het
Spata7	T	G	12: 98,630,555 (GRCm39)	F371C	probably damaging	Het
Stag1	T	G	9: 100,827,942 (GRCm39)	N990K	probably benign	Het
Tbx18	C	T	9: 87,589,883 (GRCm39)	A352T	probably damaging	Het
Thada	C	T	17: 84,538,391 (GRCm39)	R1539Q	probably benign	Het
Thrap3	A	C	4: 126,078,920 (GRCm39)		probably benign	Het
Tnks	G	A	8: 35,316,458 (GRCm39)	T887M	probably damaging	Het
Trap1	A	C	16: 3,870,792 (GRCm39)	V393G	probably damaging	Het
Trpm4	A	G	7: 44,977,143 (GRCm39)		probably null	Het
Trrap	G	T	5: 144,776,424 (GRCm39)	G3007C	probably benign	Het
U2surp	A	T	9: 95,363,726 (GRCm39)	N611K	probably damaging	Het
Usp12	A	G	5: 146,705,745 (GRCm39)		probably null	Het
Vmn1r200	A	G	13: 22,579,487 (GRCm39)	T97A	possibly damaging	Het
Vmn2r110	C	T	17: 20,794,441 (GRCm39)	V743I	probably benign	Het
Vps50	C	T	6: 3,600,256 (GRCm39)	T905M	probably damaging	Het
Wdr48	T	A	9: 119,736,855 (GRCm39)		probably null	Het
Zfp446	C	T	7: 12,712,049 (GRCm39)		probably benign	Het
Zfr	T	C	15: 12,181,015 (GRCm39)	S1012P	probably benign	Het

Other mutations in Rtp3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00329:Rtp3	APN	9	110,815,666 (GRCm39)	missense	probably benign	0.03
IGL02212:Rtp3	APN	9	110,816,389 (GRCm39)	splice site	probably benign
IGL03033:Rtp3	APN	9	110,815,162 (GRCm39)	unclassified	probably benign
R0392:Rtp3	UTSW	9	110,818,621 (GRCm39)	missense	probably damaging	0.98
R0529:Rtp3	UTSW	9	110,816,152 (GRCm39)	missense	possibly damaging	0.93
R0645:Rtp3	UTSW	9	110,816,168 (GRCm39)	missense	probably damaging	0.97
R1282:Rtp3	UTSW	9	110,815,988 (GRCm39)	missense	probably benign	0.01
R1609:Rtp3	UTSW	9	110,815,085 (GRCm39)	unclassified	probably benign
R1649:Rtp3	UTSW	9	110,815,772 (GRCm39)	missense	probably benign	0.00
R1662:Rtp3	UTSW	9	110,815,751 (GRCm39)	missense	probably benign	0.23
R2011:Rtp3	UTSW	9	110,815,102 (GRCm39)	unclassified	probably benign
R3697:Rtp3	UTSW	9	110,816,262 (GRCm39)	missense	possibly damaging	0.86
R4661:Rtp3	UTSW	9	110,815,519 (GRCm39)	splice site	probably null
R4707:Rtp3	UTSW	9	110,815,279 (GRCm39)	unclassified	probably benign
R4764:Rtp3	UTSW	9	110,816,418 (GRCm39)	intron	probably benign
R4796:Rtp3	UTSW	9	110,815,522 (GRCm39)	missense	probably benign	0.00
R4839:Rtp3	UTSW	9	110,818,544 (GRCm39)	missense	probably damaging	1.00
R5262:Rtp3	UTSW	9	110,815,195 (GRCm39)	unclassified	probably benign
R5886:Rtp3	UTSW	9	110,816,204 (GRCm39)	missense	probably damaging	1.00
R5932:Rtp3	UTSW	9	110,815,760 (GRCm39)	missense	probably benign	0.04
R6089:Rtp3	UTSW	9	110,816,041 (GRCm39)	missense	probably benign	0.00
R6545:Rtp3	UTSW	9	110,815,894 (GRCm39)	missense	possibly damaging	0.83
R6812:Rtp3	UTSW	9	110,816,180 (GRCm39)	missense	probably benign	0.14
R6895:Rtp3	UTSW	9	110,816,264 (GRCm39)	missense	possibly damaging	0.72
R7023:Rtp3	UTSW	9	110,815,714 (GRCm39)	missense	probably benign	0.00
R7113:Rtp3	UTSW	9	110,815,767 (GRCm39)	missense	probably damaging	0.98
R7171:Rtp3	UTSW	9	110,815,009 (GRCm39)	missense	unknown
R7359:Rtp3	UTSW	9	110,815,364 (GRCm39)	missense	probably benign	0.33
R7721:Rtp3	UTSW	9	110,814,948 (GRCm39)	nonsense	probably null
R9402:Rtp3	UTSW	9	110,815,031 (GRCm39)	missense	unknown
R9600:Rtp3	UTSW	9	110,815,198 (GRCm39)	missense	unknown
R9623:Rtp3	UTSW	9	110,818,600 (GRCm39)	missense	probably damaging	1.00
R9648:Rtp3	UTSW	9	110,815,586 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GGAAATGTTGCTACAGGTGAC -3'
(R):5'- AGGTCACTGTCACCTGTAGC -3'

Sequencing Primer
(F):5'- TTGCTACAGGTGACAGTGACC -3'
(R):5'- ACTGTCACCTGTAGCAACATTTC -3'

Posted On

2019-06-26