Mutagenetix > Incidental Mutation

Incidental Mutation 'R8143:Trim65'

632655

Institutional Source

Beutler Lab

Gene Symbol

Trim65

Ensembl Gene

ENSMUSG00000054517

Gene Name

tripartite motif-containing 65

Synonyms

4732463G12Rik

MMRRC Submission

067571-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8143 (G1)

Quality Score

208.009

Status

Validated

Chromosome

Chromosomal Location

116012672-116021954 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 116017287 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Cysteine at position 392 (R392C)

Ref Sequence

ENSEMBL: ENSMUSP00000063410 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067632] [ENSMUST00000106440]

AlphaFold

Q8BFW4

Predicted Effect

probably benign
Transcript: ENSMUST00000067632
AA Change: R392C

PolyPhen 2 Score 0.088 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000063410
Gene: ENSMUSG00000054517
AA Change: R392C

Domain	Start	End	E-Value	Type
RING	13	51	2.47e-9	SMART
low complexity region	69	85	N/A	INTRINSIC
Blast:BBOX	94	132	3e-10	BLAST
coiled coil region	140	175	N/A	INTRINSIC
low complexity region	282	298	N/A	INTRINSIC
PRY	333	383	3.67e-3	SMART
Pfam:SPRY	386	505	1.5e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106440

SMART Domains

Protein: ENSMUSP00000102048
Gene: ENSMUSG00000054517

Domain	Start	End	E-Value	Type
RING	13	51	2.47e-9	SMART
low complexity region	69	85	N/A	INTRINSIC
Blast:BBOX	94	132	2e-10	BLAST
coiled coil region	140	175	N/A	INTRINSIC
low complexity region	282	298	N/A	INTRINSIC
PRY	333	383	3.67e-3	SMART

Coding Region Coverage

1x: 99.7%
3x: 99.4%
10x: 97.3%
20x: 85.9%

Validation Efficiency

100% (65/65)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930402F06Rik	C	A	2: 35,265,884 (GRCm39)	C262F	probably damaging	Het
Acss1	T	C	2: 150,509,801 (GRCm39)		probably null	Het
Adamtsl1	T	C	4: 86,260,492 (GRCm39)	V909A	possibly damaging	Het
Adprh	G	A	16: 38,270,694 (GRCm39)	T37M	probably benign	Het
Ak9	T	A	10: 41,213,588 (GRCm39)	Y264*	probably null	Het
Aox3	G	T	1: 58,198,074 (GRCm39)	A629S	probably benign	Het
Apcs	G	A	1: 172,721,900 (GRCm39)	P149S	probably damaging	Het
Arnt	T	A	3: 95,377,294 (GRCm39)		probably null	Het
Asb13	G	A	13: 3,692,065 (GRCm39)	G15D	probably damaging	Het
Bltp1	T	G	3: 37,000,657 (GRCm39)		probably null	Het
Cacnb1	T	G	11: 97,894,146 (GRCm39)	T459P	probably benign	Het
Chrnb2	T	C	3: 89,654,630 (GRCm39)	T718A	unknown	Het
Cttn	T	A	7: 144,014,999 (GRCm39)	K70*	probably null	Het
Cyp2f2	G	A	7: 26,828,678 (GRCm39)	V183I	probably benign	Het
Cyp39a1	T	C	17: 44,036,517 (GRCm39)	V349A	probably benign	Het
Ebf2	C	A	14: 67,649,386 (GRCm39)	Y430*	probably null	Het
Eef2	T	C	10: 81,017,182 (GRCm39)	Y730H	probably damaging	Het
Eif2ak2	G	A	17: 79,165,961 (GRCm39)	T412I	probably benign	Het
Flnc	G	C	6: 29,441,484 (GRCm39)	R422P	probably benign	Het
Fryl	G	A	5: 73,207,682 (GRCm39)	A2496V	probably benign	Het
Galnt6	A	G	15: 100,614,088 (GRCm39)	L71P	probably damaging	Het
Gm7579	C	T	7: 141,766,163 (GRCm39)	Q190*	probably null	Het
H2-T3	T	A	17: 36,498,384 (GRCm39)	R220S	probably benign	Het
Hmcn1	A	G	1: 150,734,957 (GRCm39)	V185A	probably benign	Het
Ifi208	T	A	1: 173,510,242 (GRCm39)	D132E	possibly damaging	Het
Itgb4	G	A	11: 115,884,255 (GRCm39)	V981I	probably damaging	Het
Itsn2	A	G	12: 4,683,003 (GRCm39)	T310A	unknown	Het
Kat5	A	G	19: 5,657,577 (GRCm39)		probably null	Het
Kif22	A	T	7: 126,632,397 (GRCm39)	D304E	probably damaging	Het
Mapre3	A	T	5: 31,020,719 (GRCm39)	N147Y	possibly damaging	Het
Morc2a	T	C	11: 3,628,537 (GRCm39)	V330A	probably benign	Het
Mylk	G	A	16: 34,734,525 (GRCm39)	V709M	possibly damaging	Het
Myo3a	T	G	2: 22,287,476 (GRCm39)		probably null	Het
N4bp2l2	A	T	5: 150,585,670 (GRCm39)	D103E	probably benign	Het
Nckap1	T	C	2: 80,336,530 (GRCm39)	K1062R	possibly damaging	Het
Nol9	T	C	4: 152,125,559 (GRCm39)	V170A	possibly damaging	Het
Numa1	A	G	7: 101,648,891 (GRCm39)	Q874R	possibly damaging	Het
Olig3	T	G	10: 19,232,732 (GRCm39)	V119G	probably damaging	Het
Or7g34	A	G	9: 19,478,587 (GRCm39)	V31A	probably benign	Het
Osbpl9	A	G	4: 108,922,906 (GRCm39)	S485P	probably benign	Het
Otogl	A	G	10: 107,642,527 (GRCm39)	F1301S	probably damaging	Het
Pank3	A	G	11: 35,667,036 (GRCm39)	Y51C	probably damaging	Het
Pex5l	T	C	3: 33,136,658 (GRCm39)		probably benign	Het
Pgm1	G	A	4: 99,824,415 (GRCm39)		probably null	Het
Psmd9	T	G	5: 123,366,479 (GRCm39)	I37S	probably damaging	Het
Qtrt2	A	G	16: 43,692,117 (GRCm39)	S135P	probably damaging	Het
Rexo5	T	A	7: 119,433,484 (GRCm39)		probably null	Het
Rsrp1	T	A	4: 134,654,319 (GRCm39)	D286E	probably benign	Het
Scara3	C	T	14: 66,169,269 (GRCm39)	C116Y	probably damaging	Het
Serpina3b	A	T	12: 104,096,793 (GRCm39)	T25S	probably benign	Het
Sh3pxd2a	G	A	19: 47,257,138 (GRCm39)	P555S	probably damaging	Het
Slc1a2	T	A	2: 102,568,230 (GRCm39)	L89Q	probably damaging	Het
Tgm6	T	A	2: 129,983,763 (GRCm39)	N307K	probably damaging	Het
Tmem86b	G	T	7: 4,631,484 (GRCm39)	D189E	probably damaging	Het
Trpc7	T	C	13: 56,930,362 (GRCm39)	T769A	probably benign	Het
Trrap	T	A	5: 144,772,707 (GRCm39)		probably null	Het
Ttn	T	C	2: 76,693,677 (GRCm39)	E397G	possibly damaging	Het
Vcl	A	T	14: 21,037,112 (GRCm39)	M237L	possibly damaging	Het
Vmn1r36	G	A	6: 66,693,036 (GRCm39)	Q280*	probably null	Het
Vmn2r23	A	T	6: 123,718,312 (GRCm39)	D555V	probably damaging	Het
Wnk4	A	G	11: 101,153,625 (GRCm39)	N229S	probably damaging	Het
Zfp784	A	C	7: 5,038,910 (GRCm39)	V216G	possibly damaging	Het

Other mutations in Trim65

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01420:Trim65	APN	11	116,017,335 (GRCm39)	missense	probably damaging	1.00
PIT4531001:Trim65	UTSW	11	116,018,535 (GRCm39)	missense	possibly damaging	0.85
R0105:Trim65	UTSW	11	116,016,892 (GRCm39)	makesense	probably null
R0126:Trim65	UTSW	11	116,015,430 (GRCm39)	splice site	probably benign
R0268:Trim65	UTSW	11	116,017,470 (GRCm39)	splice site	probably benign
R0647:Trim65	UTSW	11	116,019,036 (GRCm39)	missense	possibly damaging	0.92
R2234:Trim65	UTSW	11	116,021,503 (GRCm39)	missense	possibly damaging	0.91
R2235:Trim65	UTSW	11	116,021,503 (GRCm39)	missense	possibly damaging	0.91
R4011:Trim65	UTSW	11	116,018,529 (GRCm39)	missense	probably benign	0.00
R4086:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4088:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4089:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4434:Trim65	UTSW	11	116,018,435 (GRCm39)	nonsense	probably null
R5407:Trim65	UTSW	11	116,016,906 (GRCm39)	missense	probably benign
R5947:Trim65	UTSW	11	116,019,108 (GRCm39)	missense	probably damaging	0.99
R6299:Trim65	UTSW	11	116,017,377 (GRCm39)	missense	probably benign	0.00
R7248:Trim65	UTSW	11	116,018,534 (GRCm39)	missense	probably benign	0.01
R7336:Trim65	UTSW	11	116,019,116 (GRCm39)	missense	probably benign	0.00
R7496:Trim65	UTSW	11	116,017,142 (GRCm39)	missense	probably damaging	1.00
R7835:Trim65	UTSW	11	116,021,755 (GRCm39)	missense	probably damaging	1.00
R7849:Trim65	UTSW	11	116,017,082 (GRCm39)	missense	probably damaging	0.99
R8195:Trim65	UTSW	11	116,017,037 (GRCm39)	missense	probably benign	0.04
R8783:Trim65	UTSW	11	116,017,143 (GRCm39)	missense	probably damaging	1.00
R9158:Trim65	UTSW	11	116,018,050 (GRCm39)	missense	probably benign	0.01
R9740:Trim65	UTSW	11	116,021,434 (GRCm39)	missense	probably benign	0.26
R9751:Trim65	UTSW	11	116,021,564 (GRCm39)	missense	probably benign	0.01
X0061:Trim65	UTSW	11	116,017,397 (GRCm39)	missense	probably benign	0.39
X0066:Trim65	UTSW	11	116,021,672 (GRCm39)	missense	probably benign	0.25

Predicted Primers

PCR Primer
(F):5'- TCCAGGCTGTAGAAGGTGAG -3'
(R):5'- AATCTGACCTTTGACCCAGAG -3'

Sequencing Primer
(F):5'- GTTCAAATCTACGCCCAGGAGTTG -3'
(R):5'- GAGACCGCCAACCAGTATTTG -3'

Posted On

2020-06-30