Mutagenetix > Incidental Mutation

Incidental Mutation 'R8210:Vmn2r-ps158'

636116

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r-ps158

Ensembl Gene

ENSMUSG00000091528

Gene Name

vomeronasal 2, receptor, pseudogene 158

Synonyms

Vmn2r126, Gm9268

MMRRC Submission

067633-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.093) question?

Stock #

R8210 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

42668222-42697530 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 42673462 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 180 (N180K)

Ref Sequence

ENSEMBL: ENSMUSP00000129068 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000166914] [ENSMUST00000173815]

AlphaFold

E9Q0M3

Predicted Effect

probably benign
Transcript: ENSMUST00000166914
AA Change: N180K

PolyPhen 2 Score 0.162 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000129068
Gene: ENSMUSG00000091528
AA Change: N180K

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	77	473	1.1e-41	PFAM
Pfam:NCD3G	516	569	1.7e-23	PFAM
Pfam:7tm_3	602	837	9.6e-51	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000173815
AA Change: N173K

PolyPhen 2 Score 0.853 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000134441
Gene: ENSMUSG00000091528
AA Change: N173K

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	77	467	5.3e-40	PFAM
Pfam:NCD3G	509	562	4.6e-22	PFAM
Pfam:7tm_3	594	831	1.1e-73	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.4%

Validation Efficiency

100% (63/63)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsbg1	G	A	9: 54,517,083 (GRCm39)	P577S	probably damaging	Het
Adal	T	C	2: 120,985,236 (GRCm39)	V269A	possibly damaging	Het
Adam33	T	C	2: 130,898,250 (GRCm39)	T155A	probably benign	Het
Adgre1	A	T	17: 57,752,061 (GRCm39)	E603V	possibly damaging	Het
Adgrf4	T	C	17: 42,978,441 (GRCm39)	T301A	probably damaging	Het
Agtpbp1	G	T	13: 59,630,385 (GRCm39)	A782E	possibly damaging	Het
Ank3	A	T	10: 69,811,925 (GRCm39)	K1197N	possibly damaging	Het
Anxa9	A	T	3: 95,213,207 (GRCm39)	D46E	probably damaging	Het
Atg9a	T	C	1: 75,161,927 (GRCm39)	T540A	probably damaging	Het
Atg9a	A	G	1: 75,163,009 (GRCm39)	Y364H	probably damaging	Het
Bltp1	A	C	3: 37,067,030 (GRCm39)	E73A		Het
Cd300c2	C	T	11: 114,891,634 (GRCm39)	G80D	possibly damaging	Het
Cebpz	T	C	17: 79,230,685 (GRCm39)	E844G	probably benign	Het
Celsr1	T	C	15: 85,863,436 (GRCm39)	I1199V	probably benign	Het
Cftr	A	G	6: 18,220,696 (GRCm39)	N189S	probably damaging	Het
Dhrs13	G	T	11: 77,924,302 (GRCm39)	R116I	unknown	Het
Dnah10	A	G	5: 124,827,858 (GRCm39)	M735V	probably benign	Het
Dnajb8	C	T	6: 88,199,940 (GRCm39)	R159C	possibly damaging	Het
E130208F15Rik	C	A	7: 30,021,619 (GRCm39)	S93*	probably null	Het
E330034G19Rik	T	C	14: 24,346,104 (GRCm39)	I92T		Het
Eef1d	A	T	15: 75,768,309 (GRCm39)	V511D	probably damaging	Het
Efna1	T	G	3: 89,183,520 (GRCm39)	E102A	probably damaging	Het
H2-M11	C	A	17: 36,858,860 (GRCm39)	F133L	probably damaging	Het
Htr3b	G	T	9: 48,847,343 (GRCm39)		probably null	Het
Kcns3	A	G	12: 11,142,253 (GRCm39)	S149P	probably damaging	Het
Lhx4	T	A	1: 155,586,214 (GRCm39)		probably null	Het
Lrp1	C	T	10: 127,412,354 (GRCm39)	V1317M	probably damaging	Het
Mphosph9	A	G	5: 124,405,174 (GRCm39)	I799T	probably damaging	Het
Muc1	C	T	3: 89,138,906 (GRCm39)	A505V	probably damaging	Het
Muc6	C	A	7: 141,235,673 (GRCm39)		probably null	Het
Mylk	A	G	16: 34,820,721 (GRCm39)	D1891G	probably damaging	Het
Nfe2l3	A	T	6: 51,428,065 (GRCm39)	H209L	probably benign	Het
Nprl2	A	C	9: 107,421,947 (GRCm39)	Y241S	probably damaging	Het
Oprm1	A	T	10: 6,780,442 (GRCm39)	Q368L	probably benign	Het
Or4g7	T	A	2: 111,309,753 (GRCm39)	M208K	possibly damaging	Het
Pcm1	C	T	8: 41,766,974 (GRCm39)	R1593C	probably damaging	Het
Pitpnm1	T	C	19: 4,162,878 (GRCm39)		probably null	Het
Pnoc	A	G	14: 65,642,521 (GRCm39)	S81P	probably benign	Het
Prkg2	T	A	5: 99,114,393 (GRCm39)	D585V	probably damaging	Het
Prpf38b	A	T	3: 108,815,148 (GRCm39)		probably benign	Het
Ranbp3l	G	T	15: 9,065,059 (GRCm39)	S482I	probably benign	Het
Rapgef4	T	C	2: 72,056,364 (GRCm39)	F651L	probably benign	Het
Rasgrf1	A	G	9: 89,793,675 (GRCm39)	T151A	unknown	Het
Rnf215	T	C	11: 4,085,544 (GRCm39)	L91P	possibly damaging	Het
Rph3a	T	C	5: 121,099,312 (GRCm39)	H193R	probably benign	Het
Rps17	C	T	7: 80,994,750 (GRCm39)	V4I	probably benign	Het
Sec61a2	A	T	2: 5,881,728 (GRCm39)	F234Y	possibly damaging	Het
Serpinb8	T	C	1: 107,526,736 (GRCm39)	L92P	probably damaging	Het
Slc1a6	A	T	10: 78,632,091 (GRCm39)	I306F	possibly damaging	Het
Slc26a11	T	C	11: 119,270,692 (GRCm39)	V538A	possibly damaging	Het
Slc27a1	G	A	8: 72,032,566 (GRCm39)	S193N	probably benign	Het
Slc9b1	T	C	3: 135,097,948 (GRCm39)	S393P	probably damaging	Het
Slfn3	T	A	11: 83,105,332 (GRCm39)	I320K	possibly damaging	Het
Spata31f1a	T	A	4: 42,848,542 (GRCm39)	M1205L	probably benign	Het
Tgfbr1	A	T	4: 47,406,924 (GRCm39)	I420F	probably benign	Het
Tnik	A	T	3: 28,658,482 (GRCm39)	D589V	possibly damaging	Het
Trappc8	A	C	18: 21,006,938 (GRCm39)		probably null	Het
Ttbk1	A	G	17: 46,791,087 (GRCm39)	S66P	possibly damaging	Het
Unc13c	A	G	9: 73,392,220 (GRCm39)	V2044A	probably benign	Het
Usp53	T	C	3: 122,741,045 (GRCm39)	E735G	probably benign	Het
Zfyve26	A	T	12: 79,302,037 (GRCm39)	V1853D	probably damaging	Het
Zkscan17	A	G	11: 59,394,574 (GRCm39)	V9A	probably damaging	Het

Other mutations in Vmn2r-ps158

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01676:Vmn2r-ps158	APN	7	42,674,133 (GRCm39)	missense	probably damaging	0.97
IGL01753:Vmn2r-ps158	APN	7	42,674,139 (GRCm39)	missense	probably damaging	1.00
IGL02338:Vmn2r-ps158	APN	7	42,697,160 (GRCm39)	missense	probably damaging	1.00
IGL02541:Vmn2r-ps158	APN	7	42,673,092 (GRCm39)	splice site	probably benign
R0751:Vmn2r-ps158	UTSW	7	42,696,833 (GRCm39)	missense	probably damaging	0.99
R0849:Vmn2r-ps158	UTSW	7	42,674,142 (GRCm39)	missense	probably damaging	1.00
R1460:Vmn2r-ps158	UTSW	7	42,672,639 (GRCm39)	missense	probably benign	0.25
R1617:Vmn2r-ps158	UTSW	7	42,673,503 (GRCm39)	missense	probably benign	0.18
R1962:Vmn2r-ps158	UTSW	7	42,696,824 (GRCm39)	missense	probably benign	0.00
R1999:Vmn2r-ps158	UTSW	7	42,696,883 (GRCm39)	missense	probably damaging	1.00
R2022:Vmn2r-ps158	UTSW	7	42,673,454 (GRCm39)	missense	probably benign
R2434:Vmn2r-ps158	UTSW	7	42,696,881 (GRCm39)	missense	probably damaging	0.99
R3760:Vmn2r-ps158	UTSW	7	42,673,502 (GRCm39)	missense	probably benign	0.00
R4562:Vmn2r-ps158	UTSW	7	42,672,986 (GRCm39)	nonsense	probably null
R4890:Vmn2r-ps158	UTSW	7	42,697,024 (GRCm39)	missense	probably damaging	1.00
R5221:Vmn2r-ps158	UTSW	7	42,672,684 (GRCm39)	missense	probably benign	0.31
R5597:Vmn2r-ps158	UTSW	7	42,674,073 (GRCm39)	missense	probably benign	0.01
R6589:Vmn2r-ps158	UTSW	7	42,673,022 (GRCm39)	missense	possibly damaging	0.91
R6831:Vmn2r-ps158	UTSW	7	42,673,004 (GRCm39)	missense	probably damaging	1.00
R6834:Vmn2r-ps158	UTSW	7	42,673,004 (GRCm39)	missense	probably damaging	1.00
R6910:Vmn2r-ps158	UTSW	7	42,673,475 (GRCm39)	missense	probably benign	0.01
R6944:Vmn2r-ps158	UTSW	7	42,697,393 (GRCm39)	missense	possibly damaging	0.95
R7470:Vmn2r-ps158	UTSW	7	42,697,310 (GRCm39)	missense	probably damaging	1.00
R7553:Vmn2r-ps158	UTSW	7	42,697,447 (GRCm39)	missense	probably damaging	1.00
R7661:Vmn2r-ps158	UTSW	7	42,672,582 (GRCm39)	missense	probably benign	0.00
R7677:Vmn2r-ps158	UTSW	7	42,674,163 (GRCm39)	missense	probably damaging	1.00
R8087:Vmn2r-ps158	UTSW	7	42,697,094 (GRCm39)	missense	probably benign	0.04
R8379:Vmn2r-ps158	UTSW	7	42,697,270 (GRCm39)	missense	probably damaging	1.00
R8692:Vmn2r-ps158	UTSW	7	42,697,108 (GRCm39)	missense	probably benign	0.13
R8917:Vmn2r-ps158	UTSW	7	42,697,433 (GRCm39)	missense	probably damaging	1.00
R9255:Vmn2r-ps158	UTSW	7	42,673,965 (GRCm39)	missense	possibly damaging	0.75
R9375:Vmn2r-ps158	UTSW	7	42,673,499 (GRCm39)	missense	possibly damaging	0.87
R9452:Vmn2r-ps158	UTSW	7	42,697,257 (GRCm39)	missense	possibly damaging	0.88
R9647:Vmn2r-ps158	UTSW	7	42,697,171 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGTACTTGATGACAGATCCAC -3'
(R):5'- TTTTCACAAAGGCTAAGCAGATCC -3'

Sequencing Primer
(F):5'- GGTACTTGATGACAGATCCACATTTC -3'
(R):5'- AGGCTAAGCAGATCCTATTACTTTCC -3'

Posted On

2020-07-13