Mutagenetix > Incidental Mutation

Incidental Mutation 'R8924:Zscan10'

679508

Institutional Source

Beutler Lab

Gene Symbol

Zscan10

Ensembl Gene

ENSMUSG00000023902

Gene Name

zinc finger and SCAN domain containing 10

Synonyms

Zscan10, Zfp206

MMRRC Submission

068769-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.212) question?

Stock #

R8924 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

23819830-23829993 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 23824580 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Leucine at position 12 (Q12L)

Ref Sequence

ENSEMBL: ENSMUSP00000093255 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000095595] [ENSMUST00000115509] [ENSMUST00000117606] [ENSMUST00000118369] [ENSMUST00000120967] [ENSMUST00000122285] [ENSMUST00000123866] [ENSMUST00000129227] [ENSMUST00000138487] [ENSMUST00000148062]

AlphaFold

Q3URR7

PDB Structure

Crystal structure of the SCAN domain from mouse Zfp206 [X-RAY DIFFRACTION]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000095595
AA Change: Q12L

PolyPhen 2 Score 0.662 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000093255
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
SCAN	39	145	1.28e-34	SMART
low complexity region	173	194	N/A	INTRINSIC
ZnF_C2H2	343	366	4.4e-2	SMART
ZnF_C2H2	378	400	5.59e-4	SMART
ZnF_C2H2	406	428	1.25e-1	SMART
ZnF_C2H2	434	456	2.05e-2	SMART
ZnF_C2H2	478	500	2.75e-3	SMART
low complexity region	507	521	N/A	INTRINSIC
ZnF_C2H2	524	547	1.82e-3	SMART
ZnF_C2H2	553	575	3.16e-3	SMART
ZnF_C2H2	581	603	1.95e-3	SMART
ZnF_C2H2	609	631	4.17e-3	SMART
ZnF_C2H2	637	659	1.56e-2	SMART
ZnF_C2H2	665	687	2.4e-3	SMART
ZnF_C2H2	693	715	1.98e-4	SMART
ZnF_C2H2	726	748	1.58e-3	SMART
ZnF_C2H2	754	776	6.42e-4	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000115509
AA Change: Q12L

PolyPhen 2 Score 0.462 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000111171
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
SCAN	39	148	3.37e-34	SMART
ZnF_C2H2	233	256	4.4e-2	SMART
ZnF_C2H2	268	290	5.59e-4	SMART
ZnF_C2H2	296	318	1.25e-1	SMART
ZnF_C2H2	324	346	2.05e-2	SMART
ZnF_C2H2	368	390	2.75e-3	SMART
low complexity region	397	411	N/A	INTRINSIC
ZnF_C2H2	414	437	1.82e-3	SMART
ZnF_C2H2	443	465	3.16e-3	SMART
ZnF_C2H2	471	493	1.95e-3	SMART
ZnF_C2H2	499	521	4.17e-3	SMART
ZnF_C2H2	527	549	1.56e-2	SMART
ZnF_C2H2	555	577	2.4e-3	SMART
ZnF_C2H2	583	605	1.98e-4	SMART
ZnF_C2H2	616	638	1.58e-3	SMART
ZnF_C2H2	644	666	6.42e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000117606
AA Change: Q12L

PolyPhen 2 Score 0.300 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000112460
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
SCAN	39	147	1.73e-31	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000118369
AA Change: Q12L

PolyPhen 2 Score 0.713 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000113757
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
SCAN	39	152	1.59e-30	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000120967
AA Change: Q12L

PolyPhen 2 Score 0.625 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000113386
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
SCAN	39	145	1.28e-34	SMART
low complexity region	173	194	N/A	INTRINSIC
ZnF_C2H2	346	368	5.59e-4	SMART
ZnF_C2H2	374	396	1.25e-1	SMART
ZnF_C2H2	402	424	2.05e-2	SMART
ZnF_C2H2	446	468	2.75e-3	SMART
low complexity region	475	489	N/A	INTRINSIC
ZnF_C2H2	492	515	1.82e-3	SMART
ZnF_C2H2	521	543	3.16e-3	SMART
ZnF_C2H2	549	571	1.95e-3	SMART
ZnF_C2H2	577	599	4.17e-3	SMART
ZnF_C2H2	605	627	1.56e-2	SMART
ZnF_C2H2	633	655	2.4e-3	SMART
ZnF_C2H2	661	683	1.98e-4	SMART
ZnF_C2H2	694	716	1.58e-3	SMART
ZnF_C2H2	722	744	6.42e-4	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000122285
AA Change: Q12L

PolyPhen 2 Score 0.713 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000112559
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
SCAN	39	152	1.59e-30	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000123866
AA Change: Q12L

PolyPhen 2 Score 0.662 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000116748
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
SCAN	39	148	2.38e-34	SMART
ZnF_C2H2	267	290	4.4e-2	SMART
ZnF_C2H2	302	324	5.59e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000129227

SMART Domains

Protein: ENSMUSP00000118987
Gene: ENSMUSG00000023902

Domain	Start	End	E-Value	Type
ZnF_C2H2	142	164	5.59e-4	SMART
ZnF_C2H2	170	192	1.25e-1	SMART
ZnF_C2H2	198	220	2.05e-2	SMART
ZnF_C2H2	242	264	2.75e-3	SMART
low complexity region	271	285	N/A	INTRINSIC
ZnF_C2H2	288	311	1.82e-3	SMART
ZnF_C2H2	317	339	3.16e-3	SMART
ZnF_C2H2	345	367	1.95e-3	SMART
ZnF_C2H2	373	395	4.17e-3	SMART
ZnF_C2H2	401	423	1.56e-2	SMART
ZnF_C2H2	429	451	2.4e-3	SMART
ZnF_C2H2	457	479	1.98e-4	SMART
ZnF_C2H2	490	512	1.58e-3	SMART
ZnF_C2H2	518	540	6.42e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000138487
AA Change: Q12L

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000114341
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
SCAN	39	148	3.37e-34	SMART
ZnF_C2H2	236	258	5.59e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000148062
AA Change: Q12L

PolyPhen 2 Score 0.300 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000120876
Gene: ENSMUSG00000023902
AA Change: Q12L

Domain	Start	End	E-Value	Type
Pfam:SCAN	37	88	7.5e-20	PFAM
low complexity region	128	149	N/A	INTRINSIC
ZnF_C2H2	301	323	5.59e-4	SMART
ZnF_C2H2	329	351	1.25e-1	SMART
ZnF_C2H2	357	379	2.05e-2	SMART
ZnF_C2H2	401	423	2.75e-3	SMART
low complexity region	430	444	N/A	INTRINSIC
ZnF_C2H2	447	470	1.82e-3	SMART
ZnF_C2H2	476	498	3.16e-3	SMART
ZnF_C2H2	504	526	1.95e-3	SMART
ZnF_C2H2	532	554	4.17e-3	SMART
ZnF_C2H2	560	582	1.56e-2	SMART
ZnF_C2H2	588	610	2.4e-3	SMART
ZnF_C2H2	616	638	1.98e-4	SMART
ZnF_C2H2	649	671	1.58e-3	SMART
ZnF_C2H2	677	699	6.42e-4	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

98% (88/90)

MGI Phenotype

PHENOTYPE: Mice homozygous for a gene trap allele exhibit a pleiotropic phenotype including reduced weight, mild hypoplasia in the spleen, heart and long bones, eye malformations including microphthalmia, altered platelet counts, an activated immune status, and behavioral alterations. [provided by MGI curators]

Allele List at MGI

All alleles(357) : Targeted(5) Gene trapped(352)

Other mutations in this stock

Total: 90 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca8b	A	G	11: 109,838,003 (GRCm39)	V1145A	probably benign	Het
Ank1	T	C	8: 23,589,011 (GRCm39)	M562T	probably benign	Het
Atn1	A	T	6: 124,722,211 (GRCm39)	S881T	probably benign	Het
B3galt1	C	T	2: 67,949,059 (GRCm39)	T258I	probably benign	Het
Bahcc1	C	T	11: 120,167,591 (GRCm39)	L1331F	probably benign	Het
Capn12	G	A	7: 28,582,628 (GRCm39)	V168M	probably damaging	Het
Card14	T	C	11: 119,216,930 (GRCm39)	V338A	possibly damaging	Het
Cd27	T	C	6: 125,213,432 (GRCm39)		probably benign	Het
Cd37	A	G	7: 44,888,109 (GRCm39)	L37P	probably damaging	Het
Cd96	A	G	16: 45,919,385 (GRCm39)	L212P	probably damaging	Het
Celsr1	T	C	15: 85,916,671 (GRCm39)	E434G	possibly damaging	Het
Cep152	A	G	2: 125,444,778 (GRCm39)	M456T	possibly damaging	Het
Ces3b	G	A	8: 105,811,619 (GRCm39)	R45H	probably benign	Het
Cfap54	T	G	10: 92,837,685 (GRCm39)	T1072P	probably damaging	Het
Chodl	A	T	16: 78,738,659 (GRCm39)	M172L	possibly damaging	Het
Cilp2	A	G	8: 70,339,108 (GRCm39)	S47P	probably damaging	Het
Clasrp	T	C	7: 19,318,232 (GRCm39)	I596V	unknown	Het
Clcn2	C	T	16: 20,530,930 (GRCm39)	V267I	probably damaging	Het
Cntln	T	A	4: 84,806,936 (GRCm39)	D139E	probably damaging	Het
Cyp2j12	A	C	4: 95,994,685 (GRCm39)	N379K	probably damaging	Het
Defb21	T	C	2: 152,416,704 (GRCm39)	V60A	possibly damaging	Het
Dnajc16	G	T	4: 141,494,018 (GRCm39)	S543*	probably null	Het
Efcab12	G	T	6: 115,800,664 (GRCm39)	H120N	probably benign	Het
Efcab3	AACTCTA	AA	11: 104,806,253 (GRCm39)		probably null	Het
Efl1	G	A	7: 82,412,161 (GRCm39)	G850D	probably benign	Het
Efna1	T	C	3: 89,183,635 (GRCm39)	M64V	probably benign	Het
Eif2ak3	T	C	6: 70,870,003 (GRCm39)	W897R	probably damaging	Het
Eif2ak4	T	A	2: 118,258,513 (GRCm39)	F621Y	probably damaging	Het
Erbin	C	A	13: 103,975,966 (GRCm39)	E643*	probably null	Het
Esr1	G	A	10: 4,807,176 (GRCm39)	W364*	probably null	Het
Fam171a2	T	C	11: 102,330,861 (GRCm39)	E206G	possibly damaging	Het
Fam90a1a	T	C	8: 22,451,429 (GRCm39)	F97L	probably benign	Het
Fap	A	T	2: 62,378,165 (GRCm39)	F181I	probably benign	Het
Fem1b	T	C	9: 62,704,916 (GRCm39)	N115D	probably damaging	Het
Gal3st2b	G	T	1: 93,868,653 (GRCm39)	A295S	probably benign	Het
Galnt10	G	A	11: 57,674,681 (GRCm39)		probably benign	Het
Gcfc2	T	C	6: 81,909,879 (GRCm39)	V224A	probably damaging	Het
Gh	T	C	11: 106,191,634 (GRCm39)	E136G	probably damaging	Het
Gjd3	C	T	11: 98,873,325 (GRCm39)	C173Y	probably damaging	Het
Gm12695	T	A	4: 96,651,046 (GRCm39)	M136L	probably benign	Het
Gnas	A	G	2: 174,141,277 (GRCm39)	E482G	unknown	Het
Gpa33	T	C	1: 165,980,351 (GRCm39)	L138P	probably damaging	Het
Hlf	T	C	11: 90,236,714 (GRCm39)	D181G	probably damaging	Het
Irgm1	A	G	11: 48,756,698 (GRCm39)	L387S	probably benign	Het
Kctd1	T	C	18: 15,102,745 (GRCm39)	E812G	possibly damaging	Het
Klra2	T	C	6: 131,205,214 (GRCm39)	E209G	probably benign	Het
Klra3	C	T	6: 130,312,732 (GRCm39)	V11M	probably benign	Het
Klrh1	G	T	6: 129,745,084 (GRCm39)	H171N	probably benign	Het
Kmt2c	T	C	5: 25,503,885 (GRCm39)	S3808G	probably benign	Het
Krtap24-1	A	C	16: 88,408,888 (GRCm39)	S79R	probably benign	Het
Limch1	T	A	5: 67,190,475 (GRCm39)	H759Q	probably benign	Het
Map3k4	A	G	17: 12,490,433 (GRCm39)	Y333H	probably benign	Het
Mmel1	A	G	4: 154,974,091 (GRCm39)	Y377C	probably damaging	Het
Ms4a14	A	T	19: 11,281,113 (GRCm39)	Y482N	possibly damaging	Het
Myo9b	A	G	8: 71,801,675 (GRCm39)	S1277G	probably benign	Het
Nab1	T	C	1: 52,529,667 (GRCm39)	T77A	possibly damaging	Het
Obsl1	T	C	1: 75,482,841 (GRCm39)	S10G	probably benign	Het
Odc1	A	G	12: 17,598,329 (GRCm39)	T157A	possibly damaging	Het
Or2a5	T	G	6: 42,873,964 (GRCm39)	L193R	probably damaging	Het
Or8b52	T	C	9: 38,576,780 (GRCm39)	D120G	probably damaging	Het
Peg10	CCACATCAGGATCCACATCAGGATGCACATCAGCATCAGGATCCCCATCAGGATGCACATCAGGATCCACATCAGGATGCACATCAG	CCACATCAGGATCCACATCAGGATGCACATCAG	6: 4,756,398 (GRCm39)		probably benign	Het
Plpp1	T	A	13: 112,943,057 (GRCm39)		probably benign	Het
Prdm13	G	A	4: 21,679,125 (GRCm39)	A455V	possibly damaging	Het
Ptpn13	A	T	5: 103,739,101 (GRCm39)	Y2289F	probably damaging	Het
Ptpn18	G	T	1: 34,498,966 (GRCm39)	R21L	probably benign	Het
Ptprd	A	G	4: 75,916,736 (GRCm39)		probably null	Het
Rcn3	G	T	7: 44,733,095 (GRCm39)	D258E	probably damaging	Het
Ro60	C	T	1: 143,641,170 (GRCm39)		probably null	Het
Rsf1	GCG	GCGACGGCGCCG	7: 97,229,114 (GRCm39)		probably benign	Het
Sacs	T	A	14: 61,429,895 (GRCm39)	H651Q	probably benign	Het
Sacs	T	C	14: 61,448,702 (GRCm39)	S3583P	probably damaging	Het
Scel	A	G	14: 103,829,807 (GRCm39)	N463S	possibly damaging	Het
Serpinb2	A	T	1: 107,443,284 (GRCm39)	I28F	possibly damaging	Het
Sin3b	A	G	8: 73,473,131 (GRCm39)	K484E	probably benign	Het
Snrnp48	T	A	13: 38,400,397 (GRCm39)	V168D	probably damaging	Het
Snx18	T	G	13: 113,754,931 (GRCm39)	M1L	probably benign	Het
Spata31h1	T	C	10: 82,131,295 (GRCm39)	N572D	probably benign	Het
Srcap	T	A	7: 127,158,204 (GRCm39)	N2693K	unknown	Het
Stim1	A	G	7: 102,078,014 (GRCm39)	D172G		Het
Stip1	A	T	19: 7,002,687 (GRCm39)	L414H	probably damaging	Het
Sun1	A	G	5: 139,209,390 (GRCm39)	H40R	probably damaging	Het
Sva	T	A	6: 42,019,182 (GRCm39)	D117E	possibly damaging	Het
Syne2	A	G	12: 75,943,444 (GRCm39)	D321G	probably damaging	Het
Trim45	A	G	3: 100,835,394 (GRCm39)	D459G	probably damaging	Het
Ttc6	G	A	12: 57,697,790 (GRCm39)	W43*	probably null	Het
Ugt2b35	A	G	5: 87,152,780 (GRCm39)	T317A	possibly damaging	Het
Usp32	C	T	11: 84,916,370 (GRCm39)	R858Q	probably damaging	Het
Vmn2r53	G	T	7: 12,334,752 (GRCm39)	Q303K	probably benign	Het
Yeats2	T	C	16: 19,969,312 (GRCm39)		probably null	Het
Zfp804a	A	G	2: 82,088,747 (GRCm39)	N859D	probably benign	Het

Other mutations in Zscan10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00572:Zscan10	APN	17	23,828,435 (GRCm39)	missense	probably damaging	0.98
IGL01353:Zscan10	APN	17	23,828,574 (GRCm39)	missense	probably damaging	1.00
IGL02327:Zscan10	APN	17	23,826,546 (GRCm39)	splice site	probably benign
IGL02556:Zscan10	APN	17	23,827,119 (GRCm39)	missense	possibly damaging	0.90
FR4737:Zscan10	UTSW	17	23,828,419 (GRCm39)	small deletion	probably benign
P0043:Zscan10	UTSW	17	23,828,594 (GRCm39)	nonsense	probably null
R0345:Zscan10	UTSW	17	23,829,056 (GRCm39)	missense	probably damaging	1.00
R0401:Zscan10	UTSW	17	23,824,889 (GRCm39)	missense	probably damaging	1.00
R0699:Zscan10	UTSW	17	23,827,092 (GRCm39)	missense	probably damaging	1.00
R0838:Zscan10	UTSW	17	23,829,008 (GRCm39)	missense	possibly damaging	0.83
R0919:Zscan10	UTSW	17	23,828,981 (GRCm39)	missense	probably damaging	0.99
R1940:Zscan10	UTSW	17	23,828,826 (GRCm39)	missense	probably damaging	1.00
R4647:Zscan10	UTSW	17	23,829,314 (GRCm39)	missense	probably benign
R4753:Zscan10	UTSW	17	23,826,208 (GRCm39)	missense	probably damaging	0.99
R4971:Zscan10	UTSW	17	23,826,147 (GRCm39)	missense	possibly damaging	0.67
R5110:Zscan10	UTSW	17	23,828,606 (GRCm39)	missense	probably damaging	1.00
R5410:Zscan10	UTSW	17	23,829,395 (GRCm39)	missense	probably damaging	1.00
R5516:Zscan10	UTSW	17	23,828,333 (GRCm39)	missense	possibly damaging	0.66
R5871:Zscan10	UTSW	17	23,826,241 (GRCm39)	intron	probably benign
R6109:Zscan10	UTSW	17	23,826,103 (GRCm39)	missense	probably damaging	0.98
R6626:Zscan10	UTSW	17	23,824,831 (GRCm39)	missense	probably damaging	1.00
R6750:Zscan10	UTSW	17	23,826,164 (GRCm39)	missense	possibly damaging	0.49
R6846:Zscan10	UTSW	17	23,824,581 (GRCm39)	missense	probably damaging	0.97
R7184:Zscan10	UTSW	17	23,826,003 (GRCm39)	splice site	probably null
R7223:Zscan10	UTSW	17	23,828,456 (GRCm39)	missense	probably benign	0.00
R7436:Zscan10	UTSW	17	23,828,979 (GRCm39)	missense	possibly damaging	0.52
R8224:Zscan10	UTSW	17	23,828,366 (GRCm39)	missense	probably benign
R8366:Zscan10	UTSW	17	23,828,952 (GRCm39)	missense	probably damaging	1.00
R8787:Zscan10	UTSW	17	23,829,011 (GRCm39)	missense	probably benign
R8918:Zscan10	UTSW	17	23,826,116 (GRCm39)	missense	probably benign	0.24
R9266:Zscan10	UTSW	17	23,828,385 (GRCm39)	missense	possibly damaging	0.55
R9454:Zscan10	UTSW	17	23,826,619 (GRCm39)	critical splice donor site	probably null
R9786:Zscan10	UTSW	17	23,828,330 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GTGTGCCTTTTCTCATGCAG -3'
(R):5'- AGCCAGTGGTTGCAGAGTTC -3'

Sequencing Primer
(F):5'- TCTCATGCAGATACGCTGG -3'
(R):5'- TTGCAGAGTTCCCGGAGC -3'

Posted On

2021-08-02