Mutagenetix > Incidental Mutation

Incidental Mutation 'R9037:Ttc39a'

687455

Institutional Source

Beutler Lab

Gene Symbol

Ttc39a

Ensembl Gene

ENSMUSG00000028555

Gene Name

tetratricopeptide repeat domain 39A

Synonyms

4922503N01Rik

MMRRC Submission

068969-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9037 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

109263820-109301942 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 109299981 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 490 (E490G)

Ref Sequence

ENSEMBL: ENSMUSP00000102229 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064129] [ENSMUST00000106618]

AlphaFold

A2ACP1

Predicted Effect

probably damaging
Transcript: ENSMUST00000064129
AA Change: E488G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000066334
Gene: ENSMUSG00000028555
AA Change: E488G

Domain	Start	End	E-Value	Type
TPR	278	311	7.69e1	SMART
TPR	468	501	6.57e1	SMART
TPR	509	542	1.42e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000106618
AA Change: E490G

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000102229
Gene: ENSMUSG00000028555
AA Change: E490G

Domain	Start	End	E-Value	Type
TPR	280	313	7.69e1	SMART
TPR	470	503	6.57e1	SMART
TPR	511	544	1.42e0	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 97.9%

Validation Efficiency

100% (66/66)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ablim3	T	A	18: 61,952,066 (GRCm39)	I432F	probably benign	Het
Aco2	C	G	15: 81,756,620 (GRCm39)		probably benign	Het
Adcy1	A	G	11: 7,087,325 (GRCm39)	T400A	possibly damaging	Het
Afap1l2	A	T	19: 56,918,403 (GRCm39)		probably benign	Het
Anapc4	C	A	5: 53,021,843 (GRCm39)	Q642K	probably benign	Het
Ano8	A	G	8: 71,937,088 (GRCm39)	F160S	probably damaging	Het
Apob	T	C	12: 8,066,501 (GRCm39)	V4490A	probably benign	Het
Bcar1	A	C	8: 112,447,522 (GRCm39)	F152V	probably benign	Het
Cacna2d2	A	G	9: 107,386,395 (GRCm39)	D174G	probably benign	Het
Capn11	T	C	17: 45,950,357 (GRCm39)	K328R	probably benign	Het
Colq	C	A	14: 31,279,744 (GRCm39)		probably benign	Het
Coro1a	A	C	7: 126,299,772 (GRCm39)	M350R	probably benign	Het
Ctbp1	T	A	5: 33,424,352 (GRCm39)	M24L	probably benign	Het
Cyp2c55	T	A	19: 39,030,537 (GRCm39)	F456L	probably damaging	Het
Dnah5	A	T	15: 28,248,104 (GRCm39)	K747M	probably benign	Het
Efcab3	A	G	11: 104,803,791 (GRCm39)	D3048G	unknown	Het
Esp36	C	T	17: 38,729,840 (GRCm39)	G60D	unknown	Het
Gast	A	G	11: 100,227,436 (GRCm39)	E43G	probably damaging	Het
Gm5849	T	G	3: 90,685,155 (GRCm39)	N10T	probably benign	Het
Gulp1	T	C	1: 44,793,524 (GRCm39)	S62P	probably benign	Het
Hectd1	T	C	12: 51,832,665 (GRCm39)	D903G	possibly damaging	Het
Hk2	T	A	6: 82,720,339 (GRCm39)	I201F	probably benign	Het
Ifna2	T	C	4: 88,601,664 (GRCm39)	D118G	probably benign	Het
Ift172	T	C	5: 31,420,400 (GRCm39)	K1079E	possibly damaging	Het
Igsf9	T	C	1: 172,312,081 (GRCm39)	V9A	probably benign	Het
Ints2	G	A	11: 86,106,530 (GRCm39)	T960I	probably benign	Het
Klk12	T	C	7: 43,419,139 (GRCm39)	W35R	probably damaging	Het
Ly6c1	C	A	15: 74,917,300 (GRCm39)	G116V	probably damaging	Het
Macf1	T	C	4: 123,365,518 (GRCm39)	N3081S	probably benign	Het
Mal2	A	G	15: 54,434,939 (GRCm39)	N12S	unknown	Het
Mgat1	T	G	11: 49,152,256 (GRCm39)	N246K	probably damaging	Het
Mpeg1	T	A	19: 12,439,190 (GRCm39)	V216E	probably damaging	Het
Mpo	A	G	11: 87,688,557 (GRCm39)		probably benign	Het
Mtmr9	T	A	14: 63,761,532 (GRCm39)	T541S	possibly damaging	Het
Or4a73	C	T	2: 89,421,051 (GRCm39)	R136Q	probably benign	Het
Or51b6b	T	A	7: 103,310,382 (GRCm39)	H25L	probably benign	Het
Or5ak25	T	C	2: 85,269,139 (GRCm39)	D121G	possibly damaging	Het
Or8k3	G	T	2: 86,059,042 (GRCm39)	T91K	probably benign	Het
P2rx6	A	G	16: 17,388,307 (GRCm39)	T328A	possibly damaging	Het
Pcdhb12	A	C	18: 37,569,229 (GRCm39)	E125A	probably benign	Het
Pde3a	C	A	6: 141,416,832 (GRCm39)	Q569K	probably damaging	Het
Pepd	A	T	7: 34,720,398 (GRCm39)	Q227L	probably benign	Het
Piezo2	T	A	18: 63,225,902 (GRCm39)	E911D	probably benign	Het
Pnpla6	A	T	8: 3,592,379 (GRCm39)	R1241*	probably null	Het
Pold1	T	C	7: 44,188,339 (GRCm39)	D513G	probably damaging	Het
Polr1d	A	T	5: 147,015,490 (GRCm39)	I58L	probably benign	Het
Ppif	T	C	14: 25,694,828 (GRCm39)	L58P	probably damaging	Het
Preb	T	C	5: 31,116,590 (GRCm39)	K101R	probably benign	Het
Psma8	G	T	18: 14,854,251 (GRCm39)	V44L	probably benign	Het
Ptf1a	A	G	2: 19,451,036 (GRCm39)	Y122C	possibly damaging	Het
Ranbp6	T	C	19: 29,790,317 (GRCm39)	T12A	probably benign	Het
Rasal3	C	A	17: 32,614,094 (GRCm39)	R587L	probably benign	Het
Rnf146	T	C	10: 29,223,676 (GRCm39)	K70R	probably benign	Het
Serpinb6b	G	T	13: 33,161,998 (GRCm39)	E266*	probably null	Het
Slc15a2	A	T	16: 36,582,725 (GRCm39)	M252K	probably benign	Het
Slc2a1	T	C	4: 118,993,494 (GRCm39)	F444L	probably damaging	Het
Sox9	A	G	11: 112,675,650 (GRCm39)	S280G	probably damaging	Het
Spata31e4	A	G	13: 50,856,944 (GRCm39)	K861E	probably benign	Het
Trappc8	A	G	18: 20,961,539 (GRCm39)	V1243A	probably benign	Het
Trpv2	A	T	11: 62,475,231 (GRCm39)	T215S	probably damaging	Het
Ush2a	A	T	1: 187,995,487 (GRCm39)	D86V	possibly damaging	Het
Usp24	A	G	4: 106,236,251 (GRCm39)	T980A	probably damaging	Het
Vwa7	T	C	17: 35,236,268 (GRCm39)	V74A	probably benign	Het
Zan	A	G	5: 137,452,578 (GRCm39)	V1501A	unknown	Het
Zfp105	A	G	9: 122,758,836 (GRCm39)	E169G	possibly damaging	Het
Zfp788	C	T	7: 41,298,315 (GRCm39)	T317I	probably damaging	Het

Other mutations in Ttc39a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00870:Ttc39a	APN	4	109,299,542 (GRCm39)	splice site	probably benign
IGL01143:Ttc39a	APN	4	109,300,010 (GRCm39)	critical splice donor site	probably null
IGL01802:Ttc39a	APN	4	109,290,281 (GRCm39)	nonsense	probably null
IGL01906:Ttc39a	APN	4	109,278,591 (GRCm39)	missense	probably benign	0.04
IGL02115:Ttc39a	APN	4	109,283,491 (GRCm39)	splice site	probably benign
IGL02415:Ttc39a	APN	4	109,288,726 (GRCm39)	unclassified	probably benign
IGL02658:Ttc39a	APN	4	109,280,090 (GRCm39)	missense	probably damaging	1.00
IGL02728:Ttc39a	APN	4	109,299,920 (GRCm39)	missense	probably damaging	1.00
IGL03281:Ttc39a	APN	4	109,290,219 (GRCm39)	missense	possibly damaging	0.84
R0030:Ttc39a	UTSW	4	109,280,170 (GRCm39)	missense	probably benign
R0103:Ttc39a	UTSW	4	109,278,650 (GRCm39)	splice site	probably null
R0194:Ttc39a	UTSW	4	109,301,376 (GRCm39)	missense	probably benign
R0561:Ttc39a	UTSW	4	109,297,799 (GRCm39)	missense	probably damaging	1.00
R0603:Ttc39a	UTSW	4	109,283,499 (GRCm39)	missense	probably damaging	1.00
R2132:Ttc39a	UTSW	4	109,299,903 (GRCm39)	missense	probably damaging	1.00
R2203:Ttc39a	UTSW	4	109,288,785 (GRCm39)	missense	probably benign	0.19
R2473:Ttc39a	UTSW	4	109,299,436 (GRCm39)	missense	probably damaging	0.97
R4449:Ttc39a	UTSW	4	109,299,500 (GRCm39)	missense	possibly damaging	0.82
R4809:Ttc39a	UTSW	4	109,273,218 (GRCm39)	nonsense	probably null
R5266:Ttc39a	UTSW	4	109,279,701 (GRCm39)	missense	probably benign	0.04
R5590:Ttc39a	UTSW	4	109,290,184 (GRCm39)	critical splice acceptor site	probably null
R5911:Ttc39a	UTSW	4	109,280,168 (GRCm39)	missense	possibly damaging	0.79
R5930:Ttc39a	UTSW	4	109,288,075 (GRCm39)	missense	probably benign
R7058:Ttc39a	UTSW	4	109,288,763 (GRCm39)	missense	probably damaging	1.00
R7771:Ttc39a	UTSW	4	109,288,647 (GRCm39)	missense	probably damaging	1.00
R7791:Ttc39a	UTSW	4	109,283,544 (GRCm39)	missense	probably benign	0.00
R7849:Ttc39a	UTSW	4	109,279,687 (GRCm39)	missense	probably benign	0.00
R8687:Ttc39a	UTSW	4	109,288,776 (GRCm39)	missense	probably damaging	0.97
R8723:Ttc39a	UTSW	4	109,300,700 (GRCm39)	splice site	probably benign
R9626:Ttc39a	UTSW	4	109,278,570 (GRCm39)	missense	possibly damaging	0.83
X0013:Ttc39a	UTSW	4	109,290,334 (GRCm39)	missense	probably benign	0.02
Z1177:Ttc39a	UTSW	4	109,288,129 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAATGGGCCCAGGTGATTAC -3'
(R):5'- TTAACCATCGCCCTGATAGC -3'

Sequencing Primer
(F):5'- AGAGTTCAAGGTTCCTATGCCAG -3'
(R):5'- GCCCTGATAGCCTTTCCTGG -3'

Posted On

2021-11-19