Incidental Mutation 'IGL02313:Slc24a5'
ID 287918
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Slc24a5
Ensembl Gene ENSMUSG00000035183
Gene Name solute carrier family 24, member 5
Synonyms Oca6, F630045L20Rik, NCX5, NCKX5
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # IGL02313
Quality Score
Status
Chromosome 2
Chromosomal Location 124910076-124930316 bp(+) (GRCm39)
Type of Mutation unclassified
DNA Base Change (assembly) C to T at 124927567 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000123088 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000067780] [ENSMUST00000070353] [ENSMUST00000110501] [ENSMUST00000142718] [ENSMUST00000147105] [ENSMUST00000152367]
AlphaFold Q8C261
Predicted Effect probably benign
Transcript: ENSMUST00000067780
SMART Domains Protein: ENSMUSP00000066312
Gene: ENSMUSG00000027201

DomainStartEndE-ValueType
RRM 92 165 1.84e-22 SMART
low complexity region 198 211 N/A INTRINSIC
RRM 225 297 5.12e-21 SMART
low complexity region 318 335 N/A INTRINSIC
low complexity region 430 450 N/A INTRINSIC
RRM 498 569 6.15e-24 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000070353
SMART Domains Protein: ENSMUSP00000063887
Gene: ENSMUSG00000035183

DomainStartEndE-ValueType
transmembrane domain 13 32 N/A INTRINSIC
Pfam:Na_Ca_ex 72 216 1.1e-24 PFAM
low complexity region 274 290 N/A INTRINSIC
low complexity region 311 324 N/A INTRINSIC
Pfam:Na_Ca_ex 334 485 7.6e-31 PFAM
low complexity region 488 500 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000089825
SMART Domains Protein: ENSMUSP00000087258
Gene: ENSMUSG00000027201

DomainStartEndE-ValueType
RRM 48 121 1.84e-22 SMART
low complexity region 154 167 N/A INTRINSIC
RRM 181 253 5.12e-21 SMART
low complexity region 274 291 N/A INTRINSIC
low complexity region 386 406 N/A INTRINSIC
RRM 454 525 6.15e-24 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000110501
SMART Domains Protein: ENSMUSP00000106127
Gene: ENSMUSG00000027201

DomainStartEndE-ValueType
RRM 92 165 1.84e-22 SMART
low complexity region 198 211 N/A INTRINSIC
RRM 225 297 5.12e-21 SMART
low complexity region 318 335 N/A INTRINSIC
low complexity region 430 450 N/A INTRINSIC
RRM 498 569 6.15e-24 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000129945
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139615
Predicted Effect probably benign
Transcript: ENSMUST00000142718
SMART Domains Protein: ENSMUSP00000115519
Gene: ENSMUSG00000027201

DomainStartEndE-ValueType
RRM 92 165 1.84e-22 SMART
low complexity region 198 211 N/A INTRINSIC
RRM 225 297 5.12e-21 SMART
low complexity region 318 335 N/A INTRINSIC
low complexity region 351 376 N/A INTRINSIC
low complexity region 427 443 N/A INTRINSIC
RRM 491 562 6.15e-24 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000147105
SMART Domains Protein: ENSMUSP00000114817
Gene: ENSMUSG00000027201

DomainStartEndE-ValueType
RRM 92 165 1.84e-22 SMART
low complexity region 198 211 N/A INTRINSIC
RRM 225 297 5.12e-21 SMART
low complexity region 318 335 N/A INTRINSIC
low complexity region 410 426 N/A INTRINSIC
RRM 474 545 6.15e-24 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149963
Predicted Effect probably benign
Transcript: ENSMUST00000152367
SMART Domains Protein: ENSMUSP00000123088
Gene: ENSMUSG00000027201

DomainStartEndE-ValueType
RRM 92 165 1.84e-22 SMART
low complexity region 198 211 N/A INTRINSIC
RRM 225 297 5.12e-21 SMART
low complexity region 318 335 N/A INTRINSIC
low complexity region 351 376 N/A INTRINSIC
low complexity region 447 467 N/A INTRINSIC
RRM 515 586 6.15e-24 SMART
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the potassium-dependent sodium/calcium exchanger family and encodes an intracellular membrane protein with 2 large hydrophilic loops and 2 sets of multiple transmembrane-spanning segments. Sequence variation in this gene has been associated with differences in skin pigmentation. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit hypopigmentation and ocular albinism. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ankrd13c T A 3: 157,653,571 (GRCm39) N136K probably damaging Het
Aph1b A T 9: 66,697,955 (GRCm39) probably benign Het
Atf7ip A G 6: 136,583,718 (GRCm39) K1250E probably damaging Het
Atp8b2 T C 3: 89,857,160 (GRCm39) N400S probably damaging Het
Brca2 C A 5: 150,462,126 (GRCm39) S630Y probably damaging Het
Chd6 T A 2: 160,807,595 (GRCm39) E1873V probably damaging Het
Chrna10 T C 7: 101,761,236 (GRCm39) probably benign Het
Col6a3 A G 1: 90,739,328 (GRCm39) L907P probably damaging Het
Cxcr6 A G 9: 123,639,770 (GRCm39) N264S probably damaging Het
Cyria A G 12: 12,414,752 (GRCm39) T248A possibly damaging Het
Dgkg A G 16: 22,388,980 (GRCm39) probably benign Het
Dpysl2 T G 14: 67,061,839 (GRCm39) M256L probably benign Het
Dsp G T 13: 38,380,499 (GRCm39) E1816* probably null Het
Fam13b T C 18: 34,587,709 (GRCm39) K530E probably damaging Het
Fastk T C 5: 24,648,090 (GRCm39) H242R probably damaging Het
Fbxw28 A T 9: 109,166,420 (GRCm39) H145Q possibly damaging Het
Heatr6 T C 11: 83,669,718 (GRCm39) L910P probably damaging Het
Hmcn2 A G 2: 31,343,617 (GRCm39) T4642A possibly damaging Het
Hspg2 A G 4: 137,235,700 (GRCm39) T167A probably benign Het
Igsf10 A G 3: 59,238,111 (GRCm39) L690P probably benign Het
Klhdc10 G A 6: 30,439,865 (GRCm39) probably null Het
Krt31 A G 11: 99,939,222 (GRCm39) Y232H probably damaging Het
Lsm3 A G 6: 91,493,070 (GRCm39) probably benign Het
Mfn2 T A 4: 147,969,947 (GRCm39) I375F probably damaging Het
Mfrp A T 9: 44,014,171 (GRCm39) I180F probably damaging Het
Msh3 T C 13: 92,485,820 (GRCm39) E168G possibly damaging Het
Naa16 A T 14: 79,622,108 (GRCm39) V77D probably damaging Het
Nav2 T C 7: 49,208,521 (GRCm39) S1570P probably damaging Het
Niban3 A G 8: 72,055,504 (GRCm39) R305G possibly damaging Het
Numa1 C T 7: 101,649,439 (GRCm39) R1057* probably null Het
Nup210l G A 3: 90,030,099 (GRCm39) A271T probably damaging Het
Ogdh T C 11: 6,305,400 (GRCm39) V965A probably damaging Het
Or10h28 C A 17: 33,488,639 (GRCm39) Q314K probably benign Het
Or4m1 A T 14: 50,557,473 (GRCm39) V273E probably damaging Het
Or6c219 A G 10: 129,781,772 (GRCm39) L53P probably damaging Het
Or7g21 A T 9: 19,032,671 (GRCm39) N140I probably damaging Het
Or8b51 T A 9: 38,569,362 (GRCm39) I109F probably damaging Het
Pdp2 A T 8: 105,321,531 (GRCm39) Q460L probably benign Het
Pex5l T C 3: 33,047,141 (GRCm39) T270A probably benign Het
Pkp4 C T 2: 59,140,598 (GRCm39) Q435* probably null Het
Prss32 G A 17: 24,075,096 (GRCm39) V149M probably benign Het
Riox2 C A 16: 59,309,780 (GRCm39) P378Q probably benign Het
Rita1 C T 5: 120,747,858 (GRCm39) A147T probably damaging Het
Rsph4a T A 10: 33,781,521 (GRCm39) S124T possibly damaging Het
Sdccag8 G A 1: 176,652,321 (GRCm39) R24H possibly damaging Het
Slc22a1 C A 17: 12,894,387 (GRCm39) G54* probably null Het
Tex101 C T 7: 24,367,750 (GRCm39) V201M probably damaging Het
Tmprss7 T C 16: 45,501,956 (GRCm39) Y223C probably damaging Het
Trpc4ap T C 2: 155,492,388 (GRCm39) E382G probably damaging Het
Uggt1 A T 1: 36,223,565 (GRCm39) Y575N probably damaging Het
Vmn2r70 T C 7: 85,214,376 (GRCm39) I259V probably damaging Het
Xpo1 T A 11: 23,227,065 (GRCm39) N131K probably damaging Het
Zfp579 C T 7: 4,997,432 (GRCm39) V160M probably benign Het
Zfp697 A G 3: 98,332,766 (GRCm39) D64G probably benign Het
Zfp974 T C 7: 27,611,678 (GRCm39) T16A possibly damaging Het
Other mutations in Slc24a5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00776:Slc24a5 APN 2 124,922,809 (GRCm39) missense probably damaging 1.00
IGL01307:Slc24a5 APN 2 124,922,800 (GRCm39) missense probably damaging 1.00
IGL01926:Slc24a5 APN 2 124,910,823 (GRCm39) missense probably benign 0.01
IGL02090:Slc24a5 APN 2 124,910,218 (GRCm39) missense probably benign 0.25
IGL02328:Slc24a5 APN 2 124,922,559 (GRCm39) missense probably damaging 1.00
IGL02743:Slc24a5 APN 2 124,930,154 (GRCm39) missense probably damaging 1.00
IGL02969:Slc24a5 APN 2 124,925,147 (GRCm39) missense probably damaging 1.00
IGL03212:Slc24a5 APN 2 124,922,750 (GRCm39) missense probably damaging 1.00
IGL03258:Slc24a5 APN 2 124,922,625 (GRCm39) critical splice donor site probably null
Scarce UTSW 2 124,922,568 (GRCm39) missense probably damaging 1.00
R0344:Slc24a5 UTSW 2 124,927,621 (GRCm39) missense probably benign 0.03
R0811:Slc24a5 UTSW 2 124,910,724 (GRCm39) missense probably damaging 0.98
R0812:Slc24a5 UTSW 2 124,910,724 (GRCm39) missense probably damaging 0.98
R1018:Slc24a5 UTSW 2 124,910,827 (GRCm39) missense probably damaging 1.00
R1574:Slc24a5 UTSW 2 124,922,782 (GRCm39) missense probably damaging 0.96
R1574:Slc24a5 UTSW 2 124,922,782 (GRCm39) missense probably damaging 0.96
R1753:Slc24a5 UTSW 2 124,925,115 (GRCm39) missense possibly damaging 0.53
R2147:Slc24a5 UTSW 2 124,929,361 (GRCm39) missense probably damaging 1.00
R4934:Slc24a5 UTSW 2 124,929,940 (GRCm39) missense probably damaging 1.00
R4964:Slc24a5 UTSW 2 124,910,188 (GRCm39) missense probably benign 0.20
R4966:Slc24a5 UTSW 2 124,910,188 (GRCm39) missense probably benign 0.20
R5225:Slc24a5 UTSW 2 124,927,739 (GRCm39) missense probably damaging 0.99
R5275:Slc24a5 UTSW 2 124,927,781 (GRCm39) missense probably benign 0.09
R5438:Slc24a5 UTSW 2 124,910,785 (GRCm39) missense probably damaging 1.00
R5866:Slc24a5 UTSW 2 124,927,591 (GRCm39) missense probably damaging 1.00
R6038:Slc24a5 UTSW 2 124,927,651 (GRCm39) missense probably benign 0.04
R6038:Slc24a5 UTSW 2 124,927,651 (GRCm39) missense probably benign 0.04
R6114:Slc24a5 UTSW 2 124,925,012 (GRCm39) missense probably benign 0.01
R6211:Slc24a5 UTSW 2 124,930,171 (GRCm39) missense probably benign 0.23
R6516:Slc24a5 UTSW 2 124,930,027 (GRCm39) missense probably benign 0.01
R6675:Slc24a5 UTSW 2 124,922,615 (GRCm39) missense possibly damaging 0.82
R6677:Slc24a5 UTSW 2 124,922,615 (GRCm39) missense possibly damaging 0.82
R6826:Slc24a5 UTSW 2 124,910,778 (GRCm39) missense probably benign 0.00
R7100:Slc24a5 UTSW 2 124,922,591 (GRCm39) missense probably damaging 1.00
R7122:Slc24a5 UTSW 2 124,930,111 (GRCm39) missense probably benign 0.15
R7381:Slc24a5 UTSW 2 124,910,869 (GRCm39) missense probably benign 0.29
R7398:Slc24a5 UTSW 2 124,927,694 (GRCm39) nonsense probably null
R7401:Slc24a5 UTSW 2 124,930,111 (GRCm39) missense probably benign 0.15
R8219:Slc24a5 UTSW 2 124,927,575 (GRCm39) critical splice acceptor site probably null
R9227:Slc24a5 UTSW 2 124,922,568 (GRCm39) missense probably damaging 1.00
R9230:Slc24a5 UTSW 2 124,922,568 (GRCm39) missense probably damaging 1.00
X0067:Slc24a5 UTSW 2 124,929,423 (GRCm39) missense possibly damaging 0.95
Posted On 2015-04-16