Mutagenetix > Incidental Mutation

Incidental Mutation 'R4828:Eif3d'

372619

Institutional Source

Beutler Lab

Gene Symbol

Eif3d

Ensembl Gene

ENSMUSG00000016554

Gene Name

eukaryotic translation initiation factor 3, subunit D

Synonyms

66/67kDa, eIF3p66, mouse translation initiation factor eIF3 p66, Eif3s7

MMRRC Submission

042444-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.966) question?

Stock #

R4828 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

77843201-77855006 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 77844229 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Stop codon at position 425 (L425*)

Ref Sequence

ENSEMBL: ENSMUSP00000098053 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016696] [ENSMUST00000100484] [ENSMUST00000117725] [ENSMUST00000230419]

AlphaFold

O70194

Predicted Effect

probably benign
Transcript: ENSMUST00000016696

SMART Domains

Protein: ENSMUSP00000016696
Gene: ENSMUSG00000016552

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
Pfam:Pyr_redox_2	22	243	2.9e-11	PFAM
Pfam:Pyr_redox_3	25	240	9.3e-35	PFAM
Pfam:NAD_binding_8	26	84	3.3e-6	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000100484
AA Change: L425*

SMART Domains

Protein: ENSMUSP00000098053
Gene: ENSMUSG00000016554
AA Change: L425*

Domain	Start	End	E-Value	Type
Pfam:eIF-3_zeta	4	521	6.3e-220	PFAM
low complexity region	530	547	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000117725

SMART Domains

Protein: ENSMUSP00000113403
Gene: ENSMUSG00000016552

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
Pfam:Pyr_redox_2	23	478	3.4e-9	PFAM
Pfam:Pyr_redox_3	25	240	6.2e-37	PFAM
Pfam:NAD_binding_8	26	90	4.8e-7	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129045

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181255

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229413

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229737

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000230711

Predicted Effect

probably benign
Transcript: ENSMUST00000230419

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229824

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 93.8%

Validation Efficiency

98% (106/108)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Eukaryotic translation initiation factor-3 (eIF3), the largest of the eIFs, is a multiprotein complex composed of at least ten nonidentical subunits. The complex binds to the 40S ribosome and helps maintain the 40S and 60S ribosomal subunits in a dissociated state. It is also thought to play a role in the formation of the 40S initiation complex by interacting with the ternary complex of eIF2/GTP/methionyl-tRNA, and by promoting mRNA binding. The protein encoded by this gene is the major RNA binding subunit of the eIF3 complex. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 96 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca14	A	T	7: 119,815,470 (GRCm39)	R239S	probably damaging	Het
Adat3	T	C	10: 80,442,881 (GRCm39)	S240P	probably benign	Het
Agbl5	G	A	5: 31,048,059 (GRCm39)	R111H	probably damaging	Het
Alg2	A	G	4: 47,471,563 (GRCm39)	V415A	probably benign	Het
Alpk2	T	C	18: 65,482,184 (GRCm39)	E141G	probably benign	Het
Ampd1	A	C	3: 102,988,413 (GRCm39)	T115P	probably damaging	Het
Ankrd12	A	G	17: 66,291,632 (GRCm39)	L1267P	probably damaging	Het
Arfgef3	A	T	10: 18,528,441 (GRCm39)	S315R	probably damaging	Het
Atp10d	A	C	5: 72,396,461 (GRCm39)	D222A	probably benign	Het
B9d1	A	G	11: 61,398,461 (GRCm39)	E47G	probably damaging	Het
Bag2	T	C	1: 33,785,968 (GRCm39)	D118G	probably damaging	Het
Bnip3l	G	T	14: 67,246,208 (GRCm39)	P9Q	probably damaging	Het
Casp8ap2	A	G	4: 32,639,807 (GRCm39)	N287S	probably benign	Het
Ccdc190	A	G	1: 169,761,465 (GRCm39)	D189G	probably damaging	Het
Ccdc88a	A	G	11: 29,413,210 (GRCm39)	K583E	probably damaging	Het
Cd84	A	T	1: 171,700,315 (GRCm39)	N144I	probably damaging	Het
Chrnd	A	G	1: 87,119,293 (GRCm39)		probably benign	Het
Clca3b	G	T	3: 144,550,273 (GRCm39)	T224K	probably benign	Het
Crcp	A	G	5: 130,088,603 (GRCm39)	T119A	probably damaging	Het
Cul2	T	C	18: 3,431,013 (GRCm39)	Y596H	probably damaging	Het
Dip2c	T	A	13: 9,610,715 (GRCm39)	W356R	probably damaging	Het
Dlc1	T	A	8: 37,317,400 (GRCm39)	Q425L	possibly damaging	Het
Dnah7b	T	A	1: 46,167,272 (GRCm39)	V588D	possibly damaging	Het
Dock4	G	T	12: 40,718,436 (GRCm39)	G245W	probably damaging	Het
Dpf3	A	G	12: 83,341,273 (GRCm39)	I160T	possibly damaging	Het
Dstyk	A	G	1: 132,361,875 (GRCm39)	T102A	probably benign	Het
Elac2	A	G	11: 64,886,153 (GRCm39)	E477G	probably damaging	Het
Ephb3	G	A	16: 21,033,745 (GRCm39)	R23H	possibly damaging	Het
Exd1	C	T	2: 119,350,807 (GRCm39)	A485T	probably benign	Het
Ext2	G	A	2: 93,626,112 (GRCm39)	T316I	probably benign	Het
Fbf1	A	G	11: 116,039,777 (GRCm39)	V694A	probably benign	Het
Fgg	G	A	3: 82,915,677 (GRCm39)		probably benign	Het
Flnb	G	A	14: 7,919,238 (GRCm38)	V1664I	probably benign	Het
Flnc	G	A	6: 29,455,166 (GRCm39)	D1932N	probably damaging	Het
Gm1818	A	T	12: 48,602,409 (GRCm39)		noncoding transcript	Het
Gnai1	G	A	5: 18,496,470 (GRCm39)	S151L	probably damaging	Het
Golph3l	G	A	3: 95,499,059 (GRCm39)	R67H	possibly damaging	Het
Grk5	T	A	19: 60,976,213 (GRCm39)	C42*	probably null	Het
Herc1	G	A	9: 66,404,625 (GRCm39)		probably null	Het
Hey2	A	T	10: 30,710,179 (GRCm39)	H191Q	possibly damaging	Het
Il11	A	G	7: 4,779,481 (GRCm39)	V8A	probably benign	Het
Il23r	G	A	6: 67,408,635 (GRCm39)	P402L	probably benign	Het
Irf5	A	G	6: 29,531,140 (GRCm39)	N2S	probably damaging	Het
Lamb1	T	C	12: 31,348,929 (GRCm39)	Y606H	probably benign	Het
Larp4b	C	T	13: 9,220,934 (GRCm39)	R650C	probably damaging	Het
Lrpap1	T	C	5: 35,259,765 (GRCm39)	E111G	possibly damaging	Het
Lrrc36	T	A	8: 106,181,862 (GRCm39)	S388T	probably benign	Het
Med27	T	C	2: 29,267,950 (GRCm39)		probably benign	Het
Mrc1	T	G	2: 14,275,017 (GRCm39)	D439E	probably damaging	Het
Notch4	A	T	17: 34,789,034 (GRCm39)	E444D	probably damaging	Het
Nrm	G	A	17: 36,175,082 (GRCm39)	V137I	possibly damaging	Het
Nxpe5	T	A	5: 138,228,795 (GRCm39)	L4Q	possibly damaging	Het
Obscn	A	G	11: 58,977,496 (GRCm39)	V2052A	possibly damaging	Het
Oc90	A	T	15: 65,753,408 (GRCm39)	Y304N	probably damaging	Het
Or13f5	T	C	4: 52,826,138 (GRCm39)	V247A	probably damaging	Het
Or52d3	T	A	7: 104,229,180 (GRCm39)	F109Y	possibly damaging	Het
Or5p1	T	C	7: 107,916,677 (GRCm39)	V192A	probably benign	Het
Or8b101	T	C	9: 38,020,036 (GRCm39)	I13T	probably damaging	Het
Or8k1	T	A	2: 86,047,877 (GRCm39)	H59L	possibly damaging	Het
Parp10	A	T	15: 76,127,281 (GRCm39)	I52N	probably benign	Het
Pdgfrb	C	A	18: 61,206,315 (GRCm39)	R608S	probably damaging	Het
Pecam1	A	G	11: 106,590,634 (GRCm39)	C47R	probably damaging	Het
Pirb	C	T	7: 3,720,602 (GRCm39)	G299S	probably benign	Het
Pkhd1l1	A	G	15: 44,392,801 (GRCm39)	E1712G	possibly damaging	Het
Plce1	T	C	19: 38,757,943 (GRCm39)	I1958T	probably damaging	Het
Plch2	C	T	4: 155,069,092 (GRCm39)	R1073Q	probably benign	Het
Pld5	A	C	1: 176,102,433 (GRCm39)	I3S	probably benign	Het
Polr1a	T	C	6: 71,943,385 (GRCm39)	W1207R	possibly damaging	Het
Polr2m	T	G	9: 71,391,050 (GRCm39)	I51L	possibly damaging	Het
Ppl	G	A	16: 4,922,790 (GRCm39)	R234C	probably damaging	Het
Ppp1r42	C	T	1: 10,069,636 (GRCm39)	R142H	probably benign	Het
Prokr1	A	G	6: 87,558,224 (GRCm39)	V387A	probably benign	Het
Prss23	A	T	7: 89,159,108 (GRCm39)	Y320*	probably null	Het
Ptprk	A	T	10: 28,436,050 (GRCm39)	M804L	probably damaging	Het
Rdh16f2	A	G	10: 127,710,823 (GRCm39)	S147G	probably benign	Het
Rgs7bp	T	C	13: 105,189,532 (GRCm39)	H89R	possibly damaging	Het
Rilpl2	G	T	5: 124,607,875 (GRCm39)	T115K	possibly damaging	Het
Rnf212	G	A	5: 108,877,334 (GRCm39)	S153F	probably damaging	Het
Rnf213	A	G	11: 119,307,455 (GRCm39)	D705G	possibly damaging	Het
Selenbp2	A	G	3: 94,611,426 (GRCm39)	N379S	probably benign	Het
Sema3e	G	A	5: 14,276,654 (GRCm39)	V312M	probably damaging	Het
Sh2d5	T	A	4: 137,985,566 (GRCm39)	L338Q	probably damaging	Het
Shank3	A	G	15: 89,384,402 (GRCm39)		probably benign	Het
Skor2	G	T	18: 76,948,113 (GRCm39)	G612C	probably damaging	Het
Slc22a16	A	G	10: 40,449,636 (GRCm39)	Y24C	probably damaging	Het
Slc4a1ap	T	A	5: 31,688,053 (GRCm39)	Y312*	probably null	Het
Slc5a7	A	T	17: 54,583,827 (GRCm39)	F488I	probably benign	Het
Snrnp200	A	G	2: 127,053,527 (GRCm39)	D130G	probably damaging	Het
Sorbs2	T	A	8: 46,194,652 (GRCm39)		probably benign	Het
Tmem91	T	G	7: 25,368,803 (GRCm39)	T161P	probably damaging	Het
Tpd52l1	G	A	10: 31,222,697 (GRCm39)	T99M	probably damaging	Het
Trps1	A	G	15: 50,524,073 (GRCm39)	*1036Q	probably null	Het
Tshr	A	T	12: 91,504,564 (GRCm39)	T501S	probably damaging	Het
Tubgcp3	T	C	8: 12,721,987 (GRCm39)	N15S	probably benign	Het
Unc5b	A	G	10: 60,608,127 (GRCm39)	S669P	possibly damaging	Het
Zfp970	A	G	2: 177,167,146 (GRCm39)	E240G	probably damaging	Het

Other mutations in Eif3d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00840:Eif3d	APN	15	77,846,069 (GRCm39)	missense	probably benign
IGL01082:Eif3d	APN	15	77,843,943 (GRCm39)	missense	probably damaging	0.99
IGL01113:Eif3d	APN	15	77,847,515 (GRCm39)	missense	probably damaging	1.00
IGL01865:Eif3d	APN	15	77,851,546 (GRCm39)	missense	probably benign	0.34
IGL03070:Eif3d	APN	15	77,843,843 (GRCm39)	missense	probably damaging	1.00
IGL03277:Eif3d	APN	15	77,843,849 (GRCm39)	missense	possibly damaging	0.50
R0049:Eif3d	UTSW	15	77,843,924 (GRCm39)	missense	probably benign	0.01
R0049:Eif3d	UTSW	15	77,843,924 (GRCm39)	missense	probably benign	0.01
R0325:Eif3d	UTSW	15	77,852,420 (GRCm39)	missense	probably damaging	1.00
R1346:Eif3d	UTSW	15	77,852,754 (GRCm39)	missense	probably damaging	1.00
R2219:Eif3d	UTSW	15	77,849,142 (GRCm39)	missense	probably benign	0.35
R2993:Eif3d	UTSW	15	77,845,905 (GRCm39)	missense	possibly damaging	0.85
R3796:Eif3d	UTSW	15	77,852,769 (GRCm39)	missense	probably damaging	1.00
R3797:Eif3d	UTSW	15	77,852,769 (GRCm39)	missense	probably damaging	1.00
R3839:Eif3d	UTSW	15	77,848,300 (GRCm39)	missense	probably benign	0.30
R4690:Eif3d	UTSW	15	77,851,516 (GRCm39)	missense	probably benign	0.06
R5411:Eif3d	UTSW	15	77,843,887 (GRCm39)	missense	probably damaging	1.00
R5558:Eif3d	UTSW	15	77,846,047 (GRCm39)	missense	probably damaging	1.00
R6764:Eif3d	UTSW	15	77,845,886 (GRCm39)	missense	probably damaging	1.00
R6821:Eif3d	UTSW	15	77,845,855 (GRCm39)	missense	possibly damaging	0.93
R7176:Eif3d	UTSW	15	77,847,434 (GRCm39)	missense	probably damaging	1.00
R7322:Eif3d	UTSW	15	77,845,876 (GRCm39)	missense	probably benign	0.36
R7616:Eif3d	UTSW	15	77,845,886 (GRCm39)	missense	probably damaging	1.00
R8199:Eif3d	UTSW	15	77,844,292 (GRCm39)	missense	possibly damaging	0.66
R9457:Eif3d	UTSW	15	77,843,894 (GRCm39)	missense	probably benign	0.00
R9553:Eif3d	UTSW	15	77,843,837 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GACGATGGGTGGTCATACTAGG -3'
(R):5'- ACCAGTCTACCTCTGACTCAGG -3'

Sequencing Primer
(F):5'- GGTGGTCATACTAGGCCATAC -3'
(R):5'- ACCTCTGACTCAGGCATGC -3'

Posted On

2016-03-01