Mutagenetix > Incidental Mutation

Incidental Mutation 'R4828:Larp4b'

372610

Institutional Source

Beutler Lab

Gene Symbol

Larp4b

Ensembl Gene

ENSMUSG00000033499

Gene Name

La ribonucleoprotein 4B

Synonyms

Larp5, D13Wsu64e

MMRRC Submission

042444-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.762) question?

Stock #

R4828 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

9143917-9224487 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 9220934 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Cysteine at position 650 (R650C)

Ref Sequence

ENSEMBL: ENSMUSP00000139578 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000091829] [ENSMUST00000188211] [ENSMUST00000188939]

AlphaFold

Q6A0A2

Predicted Effect

probably damaging
Transcript: ENSMUST00000091829
AA Change: R644C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000089437
Gene: ENSMUSG00000033499
AA Change: R644C

Domain	Start	End	E-Value	Type
LA	156	234	3.25e-36	SMART
RRM	239	309	6.25e-2	SMART
low complexity region	510	529	N/A	INTRINSIC
low complexity region	586	597	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000188211
AA Change: R728C

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000140993
Gene: ENSMUSG00000033499
AA Change: R728C

Domain	Start	End	E-Value	Type
LA	156	234	3.25e-36	SMART
RRM	239	309	6.25e-2	SMART
low complexity region	510	529	N/A	INTRINSIC
low complexity region	586	597	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000188939
AA Change: R650C

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000139578
Gene: ENSMUSG00000033499
AA Change: R650C

Domain	Start	End	E-Value	Type
LA	156	234	3.25e-36	SMART
RRM	239	309	6.25e-2	SMART
low complexity region	510	529	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000189330

Meta Mutation Damage Score

0.2918

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 93.8%

Validation Efficiency

98% (106/108)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of an evolutionarily conserved protein family implicated in RNA metabolism and translation. Members of this family are characterized by the presence of an La motif, which is often located adjacent to one or more RNA recognition motifs (RRM). Together, the two motifs constitute the functional region of the protein and enable its interaction with the RNA substrate. This protein family is divided into five sub-families: the genuine La proteins and four La-related protein (LARP) sub-families. The protein encoded by this gene belongs to LARP sub-family 4. It is a cytoplasmic protein that may play a stimulatory role in translation. [provided by RefSeq, Oct 2012]

Allele List at MGI

Other mutations in this stock

Total: 96 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca14	A	T	7: 119,815,470 (GRCm39)	R239S	probably damaging	Het
Adat3	T	C	10: 80,442,881 (GRCm39)	S240P	probably benign	Het
Agbl5	G	A	5: 31,048,059 (GRCm39)	R111H	probably damaging	Het
Alg2	A	G	4: 47,471,563 (GRCm39)	V415A	probably benign	Het
Alpk2	T	C	18: 65,482,184 (GRCm39)	E141G	probably benign	Het
Ampd1	A	C	3: 102,988,413 (GRCm39)	T115P	probably damaging	Het
Ankrd12	A	G	17: 66,291,632 (GRCm39)	L1267P	probably damaging	Het
Arfgef3	A	T	10: 18,528,441 (GRCm39)	S315R	probably damaging	Het
Atp10d	A	C	5: 72,396,461 (GRCm39)	D222A	probably benign	Het
B9d1	A	G	11: 61,398,461 (GRCm39)	E47G	probably damaging	Het
Bag2	T	C	1: 33,785,968 (GRCm39)	D118G	probably damaging	Het
Bnip3l	G	T	14: 67,246,208 (GRCm39)	P9Q	probably damaging	Het
Casp8ap2	A	G	4: 32,639,807 (GRCm39)	N287S	probably benign	Het
Ccdc190	A	G	1: 169,761,465 (GRCm39)	D189G	probably damaging	Het
Ccdc88a	A	G	11: 29,413,210 (GRCm39)	K583E	probably damaging	Het
Cd84	A	T	1: 171,700,315 (GRCm39)	N144I	probably damaging	Het
Chrnd	A	G	1: 87,119,293 (GRCm39)		probably benign	Het
Clca3b	G	T	3: 144,550,273 (GRCm39)	T224K	probably benign	Het
Crcp	A	G	5: 130,088,603 (GRCm39)	T119A	probably damaging	Het
Cul2	T	C	18: 3,431,013 (GRCm39)	Y596H	probably damaging	Het
Dip2c	T	A	13: 9,610,715 (GRCm39)	W356R	probably damaging	Het
Dlc1	T	A	8: 37,317,400 (GRCm39)	Q425L	possibly damaging	Het
Dnah7b	T	A	1: 46,167,272 (GRCm39)	V588D	possibly damaging	Het
Dock4	G	T	12: 40,718,436 (GRCm39)	G245W	probably damaging	Het
Dpf3	A	G	12: 83,341,273 (GRCm39)	I160T	possibly damaging	Het
Dstyk	A	G	1: 132,361,875 (GRCm39)	T102A	probably benign	Het
Eif3d	A	T	15: 77,844,229 (GRCm39)	L425*	probably null	Het
Elac2	A	G	11: 64,886,153 (GRCm39)	E477G	probably damaging	Het
Ephb3	G	A	16: 21,033,745 (GRCm39)	R23H	possibly damaging	Het
Exd1	C	T	2: 119,350,807 (GRCm39)	A485T	probably benign	Het
Ext2	G	A	2: 93,626,112 (GRCm39)	T316I	probably benign	Het
Fbf1	A	G	11: 116,039,777 (GRCm39)	V694A	probably benign	Het
Fgg	G	A	3: 82,915,677 (GRCm39)		probably benign	Het
Flnb	G	A	14: 7,919,238 (GRCm38)	V1664I	probably benign	Het
Flnc	G	A	6: 29,455,166 (GRCm39)	D1932N	probably damaging	Het
Gm1818	A	T	12: 48,602,409 (GRCm39)		noncoding transcript	Het
Gnai1	G	A	5: 18,496,470 (GRCm39)	S151L	probably damaging	Het
Golph3l	G	A	3: 95,499,059 (GRCm39)	R67H	possibly damaging	Het
Grk5	T	A	19: 60,976,213 (GRCm39)	C42*	probably null	Het
Herc1	G	A	9: 66,404,625 (GRCm39)		probably null	Het
Hey2	A	T	10: 30,710,179 (GRCm39)	H191Q	possibly damaging	Het
Il11	A	G	7: 4,779,481 (GRCm39)	V8A	probably benign	Het
Il23r	G	A	6: 67,408,635 (GRCm39)	P402L	probably benign	Het
Irf5	A	G	6: 29,531,140 (GRCm39)	N2S	probably damaging	Het
Lamb1	T	C	12: 31,348,929 (GRCm39)	Y606H	probably benign	Het
Lrpap1	T	C	5: 35,259,765 (GRCm39)	E111G	possibly damaging	Het
Lrrc36	T	A	8: 106,181,862 (GRCm39)	S388T	probably benign	Het
Med27	T	C	2: 29,267,950 (GRCm39)		probably benign	Het
Mrc1	T	G	2: 14,275,017 (GRCm39)	D439E	probably damaging	Het
Notch4	A	T	17: 34,789,034 (GRCm39)	E444D	probably damaging	Het
Nrm	G	A	17: 36,175,082 (GRCm39)	V137I	possibly damaging	Het
Nxpe5	T	A	5: 138,228,795 (GRCm39)	L4Q	possibly damaging	Het
Obscn	A	G	11: 58,977,496 (GRCm39)	V2052A	possibly damaging	Het
Oc90	A	T	15: 65,753,408 (GRCm39)	Y304N	probably damaging	Het
Or13f5	T	C	4: 52,826,138 (GRCm39)	V247A	probably damaging	Het
Or52d3	T	A	7: 104,229,180 (GRCm39)	F109Y	possibly damaging	Het
Or5p1	T	C	7: 107,916,677 (GRCm39)	V192A	probably benign	Het
Or8b101	T	C	9: 38,020,036 (GRCm39)	I13T	probably damaging	Het
Or8k1	T	A	2: 86,047,877 (GRCm39)	H59L	possibly damaging	Het
Parp10	A	T	15: 76,127,281 (GRCm39)	I52N	probably benign	Het
Pdgfrb	C	A	18: 61,206,315 (GRCm39)	R608S	probably damaging	Het
Pecam1	A	G	11: 106,590,634 (GRCm39)	C47R	probably damaging	Het
Pirb	C	T	7: 3,720,602 (GRCm39)	G299S	probably benign	Het
Pkhd1l1	A	G	15: 44,392,801 (GRCm39)	E1712G	possibly damaging	Het
Plce1	T	C	19: 38,757,943 (GRCm39)	I1958T	probably damaging	Het
Plch2	C	T	4: 155,069,092 (GRCm39)	R1073Q	probably benign	Het
Pld5	A	C	1: 176,102,433 (GRCm39)	I3S	probably benign	Het
Polr1a	T	C	6: 71,943,385 (GRCm39)	W1207R	possibly damaging	Het
Polr2m	T	G	9: 71,391,050 (GRCm39)	I51L	possibly damaging	Het
Ppl	G	A	16: 4,922,790 (GRCm39)	R234C	probably damaging	Het
Ppp1r42	C	T	1: 10,069,636 (GRCm39)	R142H	probably benign	Het
Prokr1	A	G	6: 87,558,224 (GRCm39)	V387A	probably benign	Het
Prss23	A	T	7: 89,159,108 (GRCm39)	Y320*	probably null	Het
Ptprk	A	T	10: 28,436,050 (GRCm39)	M804L	probably damaging	Het
Rdh16f2	A	G	10: 127,710,823 (GRCm39)	S147G	probably benign	Het
Rgs7bp	T	C	13: 105,189,532 (GRCm39)	H89R	possibly damaging	Het
Rilpl2	G	T	5: 124,607,875 (GRCm39)	T115K	possibly damaging	Het
Rnf212	G	A	5: 108,877,334 (GRCm39)	S153F	probably damaging	Het
Rnf213	A	G	11: 119,307,455 (GRCm39)	D705G	possibly damaging	Het
Selenbp2	A	G	3: 94,611,426 (GRCm39)	N379S	probably benign	Het
Sema3e	G	A	5: 14,276,654 (GRCm39)	V312M	probably damaging	Het
Sh2d5	T	A	4: 137,985,566 (GRCm39)	L338Q	probably damaging	Het
Shank3	A	G	15: 89,384,402 (GRCm39)		probably benign	Het
Skor2	G	T	18: 76,948,113 (GRCm39)	G612C	probably damaging	Het
Slc22a16	A	G	10: 40,449,636 (GRCm39)	Y24C	probably damaging	Het
Slc4a1ap	T	A	5: 31,688,053 (GRCm39)	Y312*	probably null	Het
Slc5a7	A	T	17: 54,583,827 (GRCm39)	F488I	probably benign	Het
Snrnp200	A	G	2: 127,053,527 (GRCm39)	D130G	probably damaging	Het
Sorbs2	T	A	8: 46,194,652 (GRCm39)		probably benign	Het
Tmem91	T	G	7: 25,368,803 (GRCm39)	T161P	probably damaging	Het
Tpd52l1	G	A	10: 31,222,697 (GRCm39)	T99M	probably damaging	Het
Trps1	A	G	15: 50,524,073 (GRCm39)	*1036Q	probably null	Het
Tshr	A	T	12: 91,504,564 (GRCm39)	T501S	probably damaging	Het
Tubgcp3	T	C	8: 12,721,987 (GRCm39)	N15S	probably benign	Het
Unc5b	A	G	10: 60,608,127 (GRCm39)	S669P	possibly damaging	Het
Zfp970	A	G	2: 177,167,146 (GRCm39)	E240G	probably damaging	Het

Other mutations in Larp4b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01746:Larp4b	APN	13	9,208,160 (GRCm39)	missense	probably damaging	0.99
IGL02519:Larp4b	APN	13	9,208,616 (GRCm39)	missense	probably benign	0.04
IGL02609:Larp4b	APN	13	9,220,716 (GRCm39)	missense	probably damaging	1.00
R0116:Larp4b	UTSW	13	9,220,724 (GRCm39)	missense	probably damaging	1.00
R0390:Larp4b	UTSW	13	9,208,143 (GRCm39)	splice site	probably null
R0585:Larp4b	UTSW	13	9,220,737 (GRCm39)	missense	probably benign	0.08
R0585:Larp4b	UTSW	13	9,197,529 (GRCm39)	missense	probably damaging	1.00
R0751:Larp4b	UTSW	13	9,216,345 (GRCm39)	splice site	probably benign
R1184:Larp4b	UTSW	13	9,216,345 (GRCm39)	splice site	probably benign
R1202:Larp4b	UTSW	13	9,216,362 (GRCm39)	missense	possibly damaging	0.84
R1525:Larp4b	UTSW	13	9,195,486 (GRCm39)	missense	probably damaging	1.00
R1599:Larp4b	UTSW	13	9,172,186 (GRCm39)	missense	probably damaging	1.00
R1637:Larp4b	UTSW	13	9,201,133 (GRCm39)	missense	probably benign	0.12
R1833:Larp4b	UTSW	13	9,201,235 (GRCm39)	missense	possibly damaging	0.89
R1852:Larp4b	UTSW	13	9,187,339 (GRCm39)	critical splice donor site	probably null
R1962:Larp4b	UTSW	13	9,186,878 (GRCm39)	missense	probably benign
R2359:Larp4b	UTSW	13	9,208,199 (GRCm39)	missense	probably damaging	0.97
R2973:Larp4b	UTSW	13	9,216,347 (GRCm39)	splice site	probably benign
R3803:Larp4b	UTSW	13	9,208,590 (GRCm39)	missense	probably benign	0.03
R4810:Larp4b	UTSW	13	9,208,627 (GRCm39)	missense	probably benign
R5135:Larp4b	UTSW	13	9,220,773 (GRCm39)	missense	probably damaging	1.00
R5250:Larp4b	UTSW	13	9,221,013 (GRCm39)	utr 3 prime	probably benign
R5259:Larp4b	UTSW	13	9,208,220 (GRCm39)	missense	probably damaging	0.98
R5379:Larp4b	UTSW	13	9,186,945 (GRCm39)	missense	probably benign	0.17
R5436:Larp4b	UTSW	13	9,218,936 (GRCm39)	missense	possibly damaging	0.93
R5616:Larp4b	UTSW	13	9,208,695 (GRCm39)	missense	probably damaging	0.98
R5774:Larp4b	UTSW	13	9,220,679 (GRCm39)	splice site	probably null
R5818:Larp4b	UTSW	13	9,208,596 (GRCm39)	missense	probably benign
R6007:Larp4b	UTSW	13	9,218,793 (GRCm39)	missense	probably benign	0.13
R6248:Larp4b	UTSW	13	9,208,738 (GRCm39)	missense	probably benign	0.01
R6452:Larp4b	UTSW	13	9,197,503 (GRCm39)	missense	probably damaging	0.98
R6501:Larp4b	UTSW	13	9,218,829 (GRCm39)	missense	probably damaging	1.00
R7324:Larp4b	UTSW	13	9,208,616 (GRCm39)	missense	probably benign	0.04
R7689:Larp4b	UTSW	13	9,186,834 (GRCm39)	missense	probably damaging	1.00
R7737:Larp4b	UTSW	13	9,220,679 (GRCm39)	splice site	probably null
R7955:Larp4b	UTSW	13	9,186,816 (GRCm39)	missense	probably benign	0.00
R8877:Larp4b	UTSW	13	9,193,835 (GRCm39)	missense	probably benign	0.04
R8975:Larp4b	UTSW	13	9,195,537 (GRCm39)	missense	probably damaging	1.00
R9147:Larp4b	UTSW	13	9,186,819 (GRCm39)	missense	possibly damaging	0.51
R9191:Larp4b	UTSW	13	9,220,830 (GRCm39)	missense	probably benign	0.32
R9361:Larp4b	UTSW	13	9,199,937 (GRCm39)	missense	probably damaging	1.00
RF017:Larp4b	UTSW	13	9,173,946 (GRCm39)	missense	probably benign	0.05

Predicted Primers

PCR Primer
(F):5'- TTATGCAGAGATTTGTCAGAGAACG -3'
(R):5'- AACTTGCAGGTATCCCACGG -3'

Sequencing Primer
(F):5'- TGTCAGAGAACGAGTAAAGACCCTTC -3'
(R):5'- GGCCCCACAGACACTGC -3'

Posted On

2016-03-01