Mutagenetix > Incidental Mutation

Incidental Mutation 'R5074:Ampd2'

386800

Institutional Source

Beutler Lab

Gene Symbol

Ampd2

Ensembl Gene

ENSMUSG00000027889

Gene Name

adenosine monophosphate deaminase 2

Synonyms

m4521Dajl, 1200014F01Rik, Ampd-2

MMRRC Submission

042663-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.173) question?

Stock #

R5074 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

107981378-107993967 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 107986549 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 245 (M245K)

Ref Sequence

ENSEMBL: ENSMUSP00000099698 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000078912] [ENSMUST00000102637] [ENSMUST00000102638]

AlphaFold

Q9DBT5

Predicted Effect

possibly damaging
Transcript: ENSMUST00000078912
AA Change: M271K

PolyPhen 2 Score 0.562 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000077946
Gene: ENSMUSG00000027889
AA Change: M271K

Domain	Start	End	E-Value	Type
low complexity region	99	111	N/A	INTRINSIC
Pfam:A_deaminase	357	764	3.3e-137	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000102637
AA Change: M245K

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000099697
Gene: ENSMUSG00000027889
AA Change: M245K

Domain	Start	End	E-Value	Type
low complexity region	73	85	N/A	INTRINSIC
Pfam:A_deaminase	331	738	7.5e-125	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000102638
AA Change: M245K

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000099698
Gene: ENSMUSG00000027889
AA Change: M245K

Domain	Start	End	E-Value	Type
low complexity region	73	85	N/A	INTRINSIC
Pfam:A_deaminase	331	738	7.5e-125	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000106667

SMART Domains

Protein: ENSMUSP00000102278
Gene: ENSMUSG00000027889

Domain	Start	End	E-Value	Type
Pfam:A_deaminase	1	42	5.2e-17	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125467

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127232

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133129

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136712

SMART Domains

Protein: ENSMUSP00000122431
Gene: ENSMUSG00000027889

Domain	Start	End	E-Value	Type
Pfam:A_deaminase	97	165	4.1e-21	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149479

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153626

Meta Mutation Damage Score

0.4112

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is important in purine metabolism by converting AMP to IMP. The encoded protein, which acts as a homotetramer, is one of three AMP deaminases found in mammals. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit proteinuria, tubules filled with protein casts and podocyte process effacement. [provided by MGI curators]

Allele List at MGI

All alleles(5) : Gene trapped(5)

Other mutations in this stock

Total: 115 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700006A11Rik	A	T	3: 124,210,482 (GRCm39)	H143Q	probably benign	Het
Abca3	C	T	17: 24,593,274 (GRCm39)	R224C	probably damaging	Het
Adcy8	A	T	15: 64,659,207 (GRCm39)	W528R	probably damaging	Het
Agbl1	A	G	7: 76,071,665 (GRCm39)	E329G	probably damaging	Het
Agbl5	G	A	5: 31,060,403 (GRCm39)	R141Q	probably damaging	Het
Apob	G	A	12: 8,055,219 (GRCm39)		probably null	Het
Apool	C	T	X: 111,259,540 (GRCm39)	Q60*	probably null	Het
Aqp1	A	T	6: 55,322,520 (GRCm39)	I172F	probably damaging	Het
Atp7a	A	G	X: 105,153,374 (GRCm39)	D1092G	probably benign	Het
Ccdc83	A	T	7: 89,899,737 (GRCm39)	F45Y	probably damaging	Het
Cct8l1	G	A	5: 25,721,881 (GRCm39)	V199I	probably benign	Het
Cdc23	C	A	18: 34,784,742 (GRCm39)	V7L	unknown	Het
Cdc25a	T	A	9: 109,713,208 (GRCm39)	C227S	possibly damaging	Het
Ces1a	A	G	8: 93,759,303 (GRCm39)	S278P	possibly damaging	Het
Cfap65	A	T	1: 74,962,137 (GRCm39)	S695T	probably benign	Het
Col13a1	A	G	10: 61,709,797 (GRCm39)		silent	Het
Ctps1	A	T	4: 120,411,170 (GRCm39)	L282Q	probably damaging	Het
Cyp2a22	A	T	7: 26,631,906 (GRCm39)	F450Y	probably benign	Het
Cyp2d10	C	T	15: 82,287,954 (GRCm39)	R383H	probably benign	Het
Dennd3	G	A	15: 73,419,144 (GRCm39)	R645H	probably damaging	Het
Dnaaf5	G	T	5: 139,159,962 (GRCm39)	R620L	probably damaging	Het
Dnah11	A	T	12: 118,046,188 (GRCm39)	L1750*	probably null	Het
Dnah9	A	G	11: 65,740,866 (GRCm39)	F4107L	probably damaging	Het
Dnaja3	A	T	16: 4,514,289 (GRCm39)	T274S	probably damaging	Het
Dot1l	A	G	10: 80,620,480 (GRCm39)	D514G	possibly damaging	Het
Dst	A	C	1: 34,334,344 (GRCm39)	K4857N	probably damaging	Het
Dysf	A	T	6: 84,114,254 (GRCm39)	K1226M	probably damaging	Het
Enpep	T	A	3: 129,097,404 (GRCm39)	Q409L	probably damaging	Het
Fign	A	T	2: 63,810,037 (GRCm39)	L411*	probably null	Het
Flt1	C	A	5: 147,620,749 (GRCm39)	A132S	probably benign	Het
Fryl	G	A	5: 73,232,110 (GRCm39)	P1550L	probably damaging	Het
Gas2l3	CACTCGTCATACT	CACT	10: 89,266,820 (GRCm39)		probably benign	Het
H2ab3	T	C	X: 119,222,543 (GRCm39)	T84A	probably damaging	Het
Hal	A	T	10: 93,349,904 (GRCm39)	I555F	probably damaging	Het
Hibadh	C	T	6: 52,597,079 (GRCm39)	V122M	possibly damaging	Het
Hsd3b3	T	C	3: 98,649,340 (GRCm39)	T328A	possibly damaging	Het
Ifi44	T	C	3: 151,455,269 (GRCm39)		probably benign	Het
Ifi47	A	G	11: 48,986,361 (GRCm39)	T43A	probably benign	Het
Inf2	A	T	12: 112,578,473 (GRCm39)		probably null	Het
Itga10	C	T	3: 96,559,527 (GRCm39)	Q475*	probably null	Het
Itga6	T	A	2: 71,656,779 (GRCm39)	D344E	probably benign	Het
Kcnmb4	T	C	10: 116,309,102 (GRCm39)	T109A	probably benign	Het
Kif19a	G	A	11: 114,658,053 (GRCm39)	M37I	probably benign	Het
Kiss1r	C	A	10: 79,754,596 (GRCm39)	S30*	probably null	Het
Lrrc66	G	A	5: 73,765,354 (GRCm39)	P563L	probably damaging	Het
Mamdc2	T	C	19: 23,356,160 (GRCm39)	D96G	probably benign	Het
Map3k12	A	T	15: 102,410,267 (GRCm39)		probably null	Het
Mc3r	A	T	2: 172,091,533 (GRCm39)	I252F	possibly damaging	Het
Metrn	C	T	17: 26,015,613 (GRCm39)	G34D	probably damaging	Het
Mipep	A	G	14: 61,046,462 (GRCm39)	E328G	probably benign	Het
Mrtfa	A	G	15: 80,906,627 (GRCm39)	V91A	probably damaging	Het
Muc5b	A	T	7: 141,412,999 (GRCm39)	T1982S	unknown	Het
Myh8	A	T	11: 67,196,742 (GRCm39)	T1792S	possibly damaging	Het
Myo1a	T	C	10: 127,543,288 (GRCm39)		probably null	Het
Myo5a	T	A	9: 75,081,438 (GRCm39)	S1008T	probably benign	Het
Ncald	A	T	15: 37,397,478 (GRCm39)	H67Q	probably damaging	Het
Nudt5	T	A	2: 5,869,198 (GRCm39)	H141Q	probably benign	Het
Numbl	G	A	7: 26,980,415 (GRCm39)	D466N	probably damaging	Het
Nup210	T	A	6: 91,032,309 (GRCm39)	I20F	probably benign	Het
Odad1	T	A	7: 45,578,514 (GRCm39)	M29K	probably benign	Het
Or10ak12	A	C	4: 118,666,057 (GRCm39)	W319G	possibly damaging	Het
Or10p21	T	C	10: 128,847,213 (GRCm39)	Y20H	possibly damaging	Het
Or14c46	A	G	7: 85,918,799 (GRCm39)	I66T	probably damaging	Het
Or51l14	A	T	7: 103,100,617 (GRCm39)	E24D	probably benign	Het
Or52e8b	A	T	7: 104,673,260 (GRCm39)	M309K	probably benign	Het
Or52n2c	A	C	7: 104,574,700 (GRCm39)	N90K	probably benign	Het
Or7h8	A	T	9: 20,123,878 (GRCm39)	I78F	possibly damaging	Het
Or8h10	A	T	2: 86,808,666 (GRCm39)	V158D	possibly damaging	Het
Papolg	G	A	11: 23,817,331 (GRCm39)	T153I	possibly damaging	Het
Pappa	A	G	4: 65,123,365 (GRCm39)	H900R	probably benign	Het
Pcdh17	T	C	14: 84,770,782 (GRCm39)	S1087P	probably benign	Het
Phf11a	T	G	14: 59,521,849 (GRCm39)	L107F	possibly damaging	Het
Phlpp2	A	T	8: 110,652,461 (GRCm39)	I602F	probably damaging	Het
Pik3c2g	T	A	6: 139,665,873 (GRCm39)	C65S	probably null	Het
Pilra	A	G	5: 137,833,674 (GRCm39)	F131L	probably damaging	Het
Pomt2	A	C	12: 87,180,234 (GRCm39)	C256G	probably damaging	Het
Ppl	A	T	16: 4,906,742 (GRCm39)	S1184R	probably benign	Het
Prkaa1	G	T	15: 5,206,392 (GRCm39)	R416L	possibly damaging	Het
Prkdc	C	A	16: 15,589,912 (GRCm39)	R2592S	probably damaging	Het
Prmt2	C	T	10: 76,058,390 (GRCm39)	V140I	probably damaging	Het
Prodh	A	T	16: 17,895,653 (GRCm39)		probably null	Het
Psg29	T	A	7: 16,945,763 (GRCm39)	D444E	probably damaging	Het
Ptgs1	A	T	2: 36,141,272 (GRCm39)	N573I	probably damaging	Het
Rbm38	C	T	2: 172,863,875 (GRCm39)	P15S	probably benign	Het
Riox2	T	C	16: 59,312,236 (GRCm39)	S458P	possibly damaging	Het
Rnase4	T	C	14: 51,342,702 (GRCm39)	V142A	possibly damaging	Het
Rnf138	A	G	18: 21,159,204 (GRCm39)	N244S	probably benign	Het
Rnf40	T	C	7: 127,196,458 (GRCm39)	L802P	probably damaging	Het
Sfxn4	C	T	19: 60,839,450 (GRCm39)	V203M	probably damaging	Het
Skor2	G	T	18: 76,946,649 (GRCm39)	E124*	probably null	Het
Slc4a2	G	A	5: 24,643,760 (GRCm39)	S855N	probably benign	Het
Slc8a2	T	C	7: 15,884,508 (GRCm39)	L626P	possibly damaging	Het
Slco4c1	G	A	1: 96,768,953 (GRCm39)	P303L	probably damaging	Het
Slirp	A	G	12: 87,490,784 (GRCm39)	T29A	probably damaging	Het
Snrpd3	G	T	10: 75,355,227 (GRCm39)	C20F	possibly damaging	Het
Spag17	T	A	3: 99,987,434 (GRCm39)	Y1575N	possibly damaging	Het
St8sia4	G	A	1: 95,594,910 (GRCm39)	A26V	probably benign	Het
Stab2	A	T	10: 86,699,422 (GRCm39)	I481N	probably benign	Het
Tenm2	T	A	11: 35,959,208 (GRCm39)	T1114S	probably damaging	Het
Tgm1	A	G	14: 55,947,392 (GRCm39)	V323A	probably damaging	Het
Tmco4	A	G	4: 138,785,433 (GRCm39)	H501R	probably damaging	Het
Tob1	A	T	11: 94,104,567 (GRCm39)	R34S	possibly damaging	Het
Trhr2	C	T	8: 123,084,110 (GRCm39)	V297I	probably benign	Het
Trim30d	A	C	7: 104,137,165 (GRCm39)	V13G	probably damaging	Het
Trpm3	T	C	19: 22,862,713 (GRCm39)	V485A	possibly damaging	Het
Trrap	T	C	5: 144,787,989 (GRCm39)	I3518T	probably damaging	Het
Ttc27	T	C	17: 75,054,750 (GRCm39)	L352P	probably damaging	Het
Ush1g	A	G	11: 115,209,123 (GRCm39)	L357P	possibly damaging	Het
Usp24	A	G	4: 106,277,644 (GRCm39)	H2258R	probably benign	Het
Vcam1	A	G	3: 115,918,037 (GRCm39)	V308A	probably damaging	Het
Vdr	A	G	15: 97,755,459 (GRCm39)	S355P	probably benign	Het
Vldlr	T	C	19: 27,215,677 (GRCm39)	S184P	probably damaging	Het
Xpo4	C	A	14: 57,822,098 (GRCm39)	A1073S	probably benign	Het
Zfand2b	A	G	1: 75,147,634 (GRCm39)	D224G	probably benign	Het
Zfp263	A	G	16: 3,564,704 (GRCm39)	R240G	possibly damaging	Het

Other mutations in Ampd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00502:Ampd2	APN	3	107,984,712 (GRCm39)	missense	probably damaging	1.00
IGL02142:Ampd2	APN	3	107,987,660 (GRCm39)	splice site	probably benign
IGL02174:Ampd2	APN	3	107,987,601 (GRCm39)	missense	probably damaging	0.96
IGL02686:Ampd2	APN	3	107,983,811 (GRCm39)	missense	possibly damaging	0.62
IGL03326:Ampd2	APN	3	107,986,603 (GRCm39)	missense	probably benign	0.02
IGL03493:Ampd2	APN	3	107,982,674 (GRCm39)	missense	probably damaging	1.00
D4186:Ampd2	UTSW	3	107,988,427 (GRCm39)	missense	probably benign	0.00
H8562:Ampd2	UTSW	3	107,988,427 (GRCm39)	missense	probably benign	0.00
PIT4445001:Ampd2	UTSW	3	107,982,328 (GRCm39)	missense	probably damaging	1.00
R0271:Ampd2	UTSW	3	107,994,032 (GRCm39)	unclassified	probably benign
R0835:Ampd2	UTSW	3	107,983,818 (GRCm39)	missense	possibly damaging	0.48
R0975:Ampd2	UTSW	3	107,984,437 (GRCm39)	missense	probably damaging	1.00
R1061:Ampd2	UTSW	3	107,983,005 (GRCm39)	missense	probably damaging	1.00
R1466:Ampd2	UTSW	3	107,987,653 (GRCm39)	critical splice acceptor site	probably null
R1466:Ampd2	UTSW	3	107,987,653 (GRCm39)	critical splice acceptor site	probably null
R1584:Ampd2	UTSW	3	107,987,653 (GRCm39)	critical splice acceptor site	probably null
R2034:Ampd2	UTSW	3	107,984,679 (GRCm39)	missense	possibly damaging	0.91
R2164:Ampd2	UTSW	3	107,992,685 (GRCm39)	intron	probably benign
R3040:Ampd2	UTSW	3	107,983,732 (GRCm39)	missense	probably damaging	1.00
R3052:Ampd2	UTSW	3	107,993,803 (GRCm39)	utr 5 prime	probably benign
R4329:Ampd2	UTSW	3	107,985,103 (GRCm39)	intron	probably benign
R4425:Ampd2	UTSW	3	107,994,052 (GRCm39)	unclassified	probably benign
R5073:Ampd2	UTSW	3	107,986,549 (GRCm39)	missense	probably damaging	0.99
R5180:Ampd2	UTSW	3	107,986,358 (GRCm39)	missense	probably benign	0.00
R5256:Ampd2	UTSW	3	107,986,865 (GRCm39)	intron	probably benign
R5507:Ampd2	UTSW	3	107,984,929 (GRCm39)	missense	probably damaging	1.00
R5513:Ampd2	UTSW	3	107,982,983 (GRCm39)	missense	possibly damaging	0.85
R5955:Ampd2	UTSW	3	107,987,088 (GRCm39)	missense	probably damaging	1.00
R6941:Ampd2	UTSW	3	107,986,609 (GRCm39)	missense	probably damaging	0.99
R7744:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R7745:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R7815:Ampd2	UTSW	3	107,982,247 (GRCm39)	missense	probably benign	0.06
R7938:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R7939:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R7941:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R7942:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8309:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8312:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8503:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8518:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8724:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8743:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8745:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8753:Ampd2	UTSW	3	107,987,432 (GRCm39)	missense	probably benign
R8769:Ampd2	UTSW	3	107,982,613 (GRCm39)	missense	probably damaging	0.98
R9339:Ampd2	UTSW	3	107,987,616 (GRCm39)	missense	probably damaging	0.96
R9410:Ampd2	UTSW	3	107,982,590 (GRCm39)	missense	probably damaging	1.00
Z1176:Ampd2	UTSW	3	107,987,380 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCAGCACATTGACGTCAGCTAC -3'
(R):5'- TACCTTGCCCTTCATGGAGC -3'

Sequencing Primer
(F):5'- GACGTCAGCTACAAATTCCTGTAGG -3'
(R):5'- CCTTCATGGAGCCCATAGATTGG -3'

Posted On

2016-06-06