Mutagenetix > Incidental Mutation

Incidental Mutation 'R5364:Mms22l'

422983

Institutional Source

Beutler Lab

Gene Symbol

Mms22l

Ensembl Gene

ENSMUSG00000045751

Gene Name

MMS22-like, DNA repair protein

Synonyms

F730047E07Rik

MMRRC Submission

042942-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5364 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

24496451-24602950 bp(+) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

T to A at 24496882 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133658 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050446] [ENSMUST00000108222] [ENSMUST00000138567] [ENSMUST00000172622]

AlphaFold

B1AUR6

Predicted Effect

probably benign
Transcript: ENSMUST00000050446

SMART Domains

Protein: ENSMUSP00000057715
Gene: ENSMUSG00000045751

Domain	Start	End	E-Value	Type
Pfam:MMS22L_N	26	395	1.1e-199	PFAM
Pfam:MMS22L_N	392	690	4.6e-155	PFAM
low complexity region	698	711	N/A	INTRINSIC
low complexity region	761	770	N/A	INTRINSIC
Pfam:MMS22L_C	809	1186	2.3e-133	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000108222

SMART Domains

Protein: ENSMUSP00000103857
Gene: ENSMUSG00000045751

Domain	Start	End	E-Value	Type
Pfam:MMS22L_N	26	730	N/A	PFAM
low complexity region	738	751	N/A	INTRINSIC
low complexity region	801	810	N/A	INTRINSIC
Pfam:MMS22L_C	849	1225	1.4e-142	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000138567

SMART Domains

Protein: ENSMUSP00000134736
Gene: ENSMUSG00000045751

Domain	Start	End	E-Value	Type
Pfam:MMS22L_N	26	202	3e-92	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139050

Predicted Effect

probably benign
Transcript: ENSMUST00000172622

SMART Domains

Protein: ENSMUSP00000133658
Gene: ENSMUSG00000045751

Domain	Start	End	E-Value	Type
Pfam:MMS22L_N	1	204	2.5e-112	PFAM
Pfam:MMS22L_N	202	323	2.2e-61	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173079

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.6%
20x: 96.3%

Validation Efficiency

100% (102/102)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene forms a complex with tonsoku-like, DNA repair protein (TONSL), and this complex recognizes and repairs DNA double-strand breaks at sites of stalled or collapsed replication forks. The encoded protein also can bind with the histone-associated protein NFKBIL2 to help regulate the chromatin state at stalled replication forks. Finally, this gene appears to be overexpressed in most lung and esophageal cancers. Multiple transcript variants exist for this gene, but the full-length nature of only one has been determined to date. [provided by RefSeq, Dec 2015]
PHENOTYPE: Mice homozygous for a null mutation die prenatally. Heterozygous mice exhibit defects in pinna responses. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 91 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310022A10Rik	C	G	7: 27,278,192 (GRCm39)	T242R	probably damaging	Het
Abcc10	G	A	17: 46,616,577 (GRCm39)	R1205C	probably benign	Het
Acer1	A	G	17: 57,289,000 (GRCm39)	F37L	probably damaging	Het
Acp7	C	A	7: 28,310,448 (GRCm39)	G463V	probably benign	Het
Actr2	A	T	11: 20,050,797 (GRCm39)		probably benign	Het
Adam15	A	T	3: 89,252,902 (GRCm39)	I272K	probably damaging	Het
Adam1b	T	A	5: 121,638,946 (GRCm39)	I700F	possibly damaging	Het
Adam33	A	G	2: 130,896,392 (GRCm39)		probably null	Het
Ano1	T	C	7: 144,190,941 (GRCm39)	Y380C	probably damaging	Het
Arfgap3	A	C	15: 83,198,562 (GRCm39)	M307R	probably damaging	Het
Arhgap21	T	A	2: 20,854,533 (GRCm39)	R1610W	probably damaging	Het
Bbs2	A	G	8: 94,801,023 (GRCm39)	Y603H	probably benign	Het
Bbs9	G	T	9: 22,486,492 (GRCm39)		probably null	Het
Bcar3	A	C	3: 122,323,281 (GRCm39)	M779L	probably benign	Het
Bub3	A	T	7: 131,162,467 (GRCm39)	N10I	possibly damaging	Het
Cacna1c	T	G	6: 118,633,504 (GRCm39)	E1098D	probably benign	Het
Cacna1g	T	A	11: 94,307,684 (GRCm39)	M1738L	probably benign	Het
Camk2d	G	T	3: 126,574,069 (GRCm39)	G159C	probably damaging	Het
Ccdc51	A	T	9: 108,921,188 (GRCm39)	E358D	possibly damaging	Het
Cdc42bpa	A	G	1: 179,894,747 (GRCm39)	D309G	probably benign	Het
Cdhr3	A	T	12: 33,101,007 (GRCm39)	F468I	possibly damaging	Het
Chrd	A	G	16: 20,551,898 (GRCm39)	M1V	probably null	Het
Cmtm1	CGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGT	CGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGT	8: 105,036,102 (GRCm39)		probably benign	Het
Dcdc2b	T	C	4: 129,502,963 (GRCm39)	Y253C	probably damaging	Het
Dclk1	A	C	3: 55,163,366 (GRCm39)	N153H	possibly damaging	Het
Dgkg	G	T	16: 22,419,211 (GRCm39)	S96R	probably benign	Het
Dnah9	A	G	11: 65,772,522 (GRCm39)	Y3737H	possibly damaging	Het
Elovl4	A	T	9: 83,672,076 (GRCm39)	I81N	probably benign	Het
Epha7	T	A	4: 28,950,557 (GRCm39)	Y791N	probably damaging	Het
Fam193a	C	A	5: 34,623,597 (GRCm39)	T1395N	probably benign	Het
Fbln5	A	T	12: 101,737,623 (GRCm39)	V141E	probably damaging	Het
Flii	T	C	11: 60,610,954 (GRCm39)	T492A	probably benign	Het
Fnip2	A	G	3: 79,388,475 (GRCm39)	I752T	probably benign	Het
Fpr3	T	C	17: 18,190,806 (GRCm39)	W26R	probably benign	Het
Gabrb1	A	T	5: 72,294,105 (GRCm39)	T460S	probably benign	Het
Gde1	T	C	7: 118,297,874 (GRCm39)	N4S	probably benign	Het
Ghitm	G	T	14: 36,847,156 (GRCm39)	T306K	probably benign	Het
Ghitm	A	T	14: 36,847,174 (GRCm39)	I300N	probably damaging	Het
Gm4787	G	C	12: 81,424,604 (GRCm39)	T518S	probably benign	Het
Iqcd	T	C	5: 120,738,332 (GRCm39)	I50T	probably damaging	Het
Itpripl1	G	A	2: 126,983,739 (GRCm39)	P128S	possibly damaging	Het
Jag2	C	A	12: 112,874,154 (GRCm39)	L1000F	probably damaging	Het
Klhdc4	A	T	8: 122,533,375 (GRCm39)		probably benign	Het
Klra5	A	G	6: 129,876,316 (GRCm39)	F164L	probably benign	Het
Larp1b	A	G	3: 40,931,658 (GRCm39)	Y288C	probably damaging	Het
Lrfn3	T	A	7: 30,055,078 (GRCm39)	E622D	possibly damaging	Het
Lyst	A	G	13: 13,831,439 (GRCm39)	D1621G	probably benign	Het
Mastl	T	C	2: 23,023,665 (GRCm39)	T353A	probably benign	Het
Mkln1	T	C	6: 31,473,647 (GRCm39)	Y130H	probably damaging	Het
Mroh7	T	A	4: 106,548,840 (GRCm39)	M1008L	probably benign	Het
Nipal1	T	C	5: 72,825,243 (GRCm39)	V312A	probably damaging	Het
Nlrp5	T	A	7: 23,117,753 (GRCm39)	Y492*	probably null	Het
Odad1	T	A	7: 45,585,756 (GRCm39)	I105N	probably damaging	Het
Or1n1	T	C	2: 36,750,006 (GRCm39)	Y118C	probably damaging	Het
Otulinl	G	A	15: 27,660,031 (GRCm39)	Q24*	probably null	Het
Pcdhb11	T	A	18: 37,555,232 (GRCm39)	D187E	probably benign	Het
Pcdhb13	A	G	18: 37,576,561 (GRCm39)	Y313C	probably damaging	Het
Pdpn	G	A	4: 143,000,526 (GRCm39)	T102I	possibly damaging	Het
Pear1	A	T	3: 87,665,668 (GRCm39)	C120S	probably damaging	Het
Peg10	T	C	6: 4,756,128 (GRCm39)		probably benign	Het
Ppm1e	A	G	11: 87,128,007 (GRCm39)	W384R	probably benign	Het
Ppp1r10	C	T	17: 36,241,324 (GRCm39)	P700S	unknown	Het
Prl2c5	G	A	13: 13,357,627 (GRCm39)	R13K	probably benign	Het
Prmt3	C	A	7: 49,498,554 (GRCm39)	P487T	probably damaging	Het
Proser3	C	A	7: 30,245,573 (GRCm39)	A144S	possibly damaging	Het
Ptcd1	G	A	5: 145,088,241 (GRCm39)	T590I	probably damaging	Het
Rbsn	A	G	6: 92,170,958 (GRCm39)	V321A	probably damaging	Het
Slc40a1	C	A	1: 45,964,383 (GRCm39)	C14F	probably damaging	Het
Slc6a15	T	C	10: 103,229,369 (GRCm39)	I136T	probably damaging	Het
Slc7a4	A	G	16: 17,391,227 (GRCm39)	I449T	probably benign	Het
Snrnp48	T	A	13: 38,394,165 (GRCm39)		probably null	Het
Tada2a	A	G	11: 84,011,973 (GRCm39)	Y23H	probably benign	Het
Tbx15	A	T	3: 99,259,508 (GRCm39)	S460C	possibly damaging	Het
Tbx21	C	T	11: 96,992,304 (GRCm39)		probably null	Het
Tmcc2	T	G	1: 132,285,534 (GRCm39)	T376P	probably damaging	Het
Tmco4	G	A	4: 138,779,815 (GRCm39)	C420Y	probably damaging	Het
Tmem235	C	A	11: 117,755,020 (GRCm39)	Y157*	probably null	Het
Tmem63b	T	C	17: 45,975,653 (GRCm39)		probably benign	Het
Tnfrsf1a	T	C	6: 125,334,356 (GRCm39)	S92P	possibly damaging	Het
Top3b	A	T	16: 16,704,834 (GRCm39)	T397S	probably benign	Het
Trabd	C	A	15: 88,967,007 (GRCm39)		probably benign	Het
Trbv21	A	T	6: 41,179,764 (GRCm39)	I27L	possibly damaging	Het
Trim3	C	T	7: 105,268,276 (GRCm39)	V169M	probably damaging	Het
Ttn	T	C	2: 76,807,458 (GRCm39)	T92A	probably damaging	Het
Ttn	C	T	2: 76,738,860 (GRCm39)	S3893N	probably benign	Het
Uchl4	A	T	9: 64,142,821 (GRCm39)	I101F	possibly damaging	Het
Vmn1r5	T	A	6: 56,962,583 (GRCm39)	M86K	probably damaging	Het
Vmn2r55	T	A	7: 12,404,830 (GRCm39)	Q191L	possibly damaging	Het
Zfp458	A	T	13: 67,406,012 (GRCm39)	C139*	probably null	Het
Zfp788	T	C	7: 41,299,551 (GRCm39)	L729P	probably damaging	Het
Zmym2	T	A	14: 57,158,102 (GRCm39)	M547K	possibly damaging	Het

Other mutations in Mms22l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01648:Mms22l	APN	4	24,502,805 (GRCm39)	missense	probably damaging	1.00
IGL02158:Mms22l	APN	4	24,505,349 (GRCm39)	missense	probably damaging	0.98
IGL02533:Mms22l	APN	4	24,581,099 (GRCm39)	splice site	probably benign
IGL02612:Mms22l	APN	4	24,508,482 (GRCm39)	missense	probably benign	0.03
IGL02685:Mms22l	APN	4	24,591,133 (GRCm39)	missense	probably benign
IGL03000:Mms22l	APN	4	24,581,161 (GRCm39)	missense	probably damaging	0.99
IGL03006:Mms22l	APN	4	24,521,253 (GRCm39)	missense	probably damaging	1.00
PIT4280001:Mms22l	UTSW	4	24,581,149 (GRCm39)	missense	probably benign	0.08
R0157:Mms22l	UTSW	4	24,588,224 (GRCm39)	missense	probably damaging	1.00
R0279:Mms22l	UTSW	4	24,497,867 (GRCm39)	missense	probably damaging	1.00
R0669:Mms22l	UTSW	4	24,517,223 (GRCm39)	missense	probably benign	0.00
R1056:Mms22l	UTSW	4	24,586,344 (GRCm39)	critical splice donor site	probably null
R1232:Mms22l	UTSW	4	24,536,274 (GRCm39)	missense	probably benign	0.24
R1389:Mms22l	UTSW	4	24,591,076 (GRCm39)	missense	probably damaging	1.00
R1543:Mms22l	UTSW	4	24,591,084 (GRCm39)	missense	probably benign	0.41
R1604:Mms22l	UTSW	4	24,502,804 (GRCm39)	missense	probably damaging	1.00
R1872:Mms22l	UTSW	4	24,598,807 (GRCm39)	missense	probably damaging	0.99
R1929:Mms22l	UTSW	4	24,535,936 (GRCm39)	unclassified	probably benign
R2024:Mms22l	UTSW	4	24,588,365 (GRCm39)	missense	probably damaging	1.00
R2081:Mms22l	UTSW	4	24,536,150 (GRCm39)	missense	probably damaging	1.00
R2104:Mms22l	UTSW	4	24,591,084 (GRCm39)	missense	probably benign	0.41
R2147:Mms22l	UTSW	4	24,580,063 (GRCm39)	nonsense	probably null
R2379:Mms22l	UTSW	4	24,496,929 (GRCm39)	missense	possibly damaging	0.87
R2496:Mms22l	UTSW	4	24,521,269 (GRCm39)	missense	probably benign	0.31
R3508:Mms22l	UTSW	4	24,586,224 (GRCm39)	missense	probably benign	0.01
R3625:Mms22l	UTSW	4	24,505,357 (GRCm39)	missense	probably damaging	1.00
R3789:Mms22l	UTSW	4	24,517,115 (GRCm39)	missense	possibly damaging	0.75
R4422:Mms22l	UTSW	4	24,503,008 (GRCm39)	missense	probably damaging	1.00
R4623:Mms22l	UTSW	4	24,502,792 (GRCm39)	nonsense	probably null
R4799:Mms22l	UTSW	4	24,580,052 (GRCm39)	critical splice acceptor site	probably null
R4825:Mms22l	UTSW	4	24,536,226 (GRCm39)	missense	probably damaging	1.00
R5236:Mms22l	UTSW	4	24,588,347 (GRCm39)	missense	probably benign	0.02
R5276:Mms22l	UTSW	4	24,578,774 (GRCm39)	missense	probably damaging	1.00
R5394:Mms22l	UTSW	4	24,517,115 (GRCm39)	missense	possibly damaging	0.75
R6905:Mms22l	UTSW	4	24,503,107 (GRCm39)	missense	probably benign	0.00
R7206:Mms22l	UTSW	4	24,591,146 (GRCm39)	missense	probably benign	0.00
R7290:Mms22l	UTSW	4	24,517,139 (GRCm39)	missense	probably benign
R7425:Mms22l	UTSW	4	24,596,287 (GRCm39)	missense	probably benign	0.15
R7524:Mms22l	UTSW	4	24,536,138 (GRCm39)	missense	possibly damaging	0.89
R7536:Mms22l	UTSW	4	24,581,240 (GRCm39)	missense	probably damaging	0.99
R7722:Mms22l	UTSW	4	24,517,201 (GRCm39)	missense	probably damaging	1.00
R7757:Mms22l	UTSW	4	24,598,884 (GRCm39)	critical splice donor site	probably null
R7764:Mms22l	UTSW	4	24,598,842 (GRCm39)	missense	probably damaging	1.00
R7947:Mms22l	UTSW	4	24,505,373 (GRCm39)	missense	probably damaging	1.00
R8220:Mms22l	UTSW	4	24,536,375 (GRCm39)	missense	probably damaging	1.00
R8316:Mms22l	UTSW	4	24,578,855 (GRCm39)	missense	probably damaging	0.98
R8472:Mms22l	UTSW	4	24,502,943 (GRCm39)	missense	possibly damaging	0.86
R8495:Mms22l	UTSW	4	24,496,908 (GRCm39)	start codon destroyed	probably null	0.96
R8699:Mms22l	UTSW	4	24,507,363 (GRCm39)	missense	possibly damaging	0.72
R8795:Mms22l	UTSW	4	24,536,245 (GRCm39)	missense	probably benign	0.21
R8932:Mms22l	UTSW	4	24,533,029 (GRCm39)	missense	probably damaging	1.00
R8979:Mms22l	UTSW	4	24,580,070 (GRCm39)	missense	probably benign	0.01
R8996:Mms22l	UTSW	4	24,598,884 (GRCm39)	critical splice donor site	probably null
R9184:Mms22l	UTSW	4	24,596,182 (GRCm39)	missense	probably damaging	1.00
R9194:Mms22l	UTSW	4	24,600,185 (GRCm39)	nonsense	probably null
R9204:Mms22l	UTSW	4	24,581,153 (GRCm39)	missense	probably damaging	1.00
R9258:Mms22l	UTSW	4	24,588,238 (GRCm39)	missense	probably damaging	1.00
R9266:Mms22l	UTSW	4	24,578,878 (GRCm39)	missense	probably damaging	1.00
R9403:Mms22l	UTSW	4	24,580,204 (GRCm39)	critical splice donor site	probably null
R9788:Mms22l	UTSW	4	24,586,204 (GRCm39)	missense	probably benign	0.08
RF005:Mms22l	UTSW	4	24,517,207 (GRCm39)	missense	probably benign	0.26

Predicted Primers

PCR Primer
(F):5'- AGCGAATCCCTGGACTTGTC -3'
(R):5'- ACTGGCAAGGTAGGACTCTC -3'

Sequencing Primer
(F):5'- GGAATTTCGCCTGCTTCCGG -3'
(R):5'- GGTAGGACTCTCCAGAGAATTTTCC -3'

Posted On

2016-08-04