Mutagenetix > Incidental Mutation

Incidental Mutation 'R5999:Usp17lb'

480723

Institutional Source

Beutler Lab

Gene Symbol

Usp17lb

Ensembl Gene

ENSMUSG00000062369

Gene Name

ubiquitin specific peptidase 17-like B

Synonyms

Dub1a

MMRRC Submission

044178-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.123) question?

Stock #

R5999 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

104489464-104491790 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 104489552 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Methionine at position 457 (I457M)

Ref Sequence

ENSEMBL: ENSMUSP00000102427 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000076501] [ENSMUST00000106814]

AlphaFold

E9Q9U0

Predicted Effect

probably damaging
Transcript: ENSMUST00000076501
AA Change: I458M

PolyPhen 2 Score 0.975 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000075822
Gene: ENSMUSG00000062369
AA Change: I458M

Domain	Start	End	E-Value	Type
Pfam:UCH	50	345	3.2e-55	PFAM
Pfam:UCH_1	51	327	6.8e-26	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000106814
AA Change: I457M

PolyPhen 2 Score 0.986 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000102427
Gene: ENSMUSG00000062369
AA Change: I457M

Domain	Start	End	E-Value	Type
Pfam:UCH	49	344	2.3e-61	PFAM
Pfam:UCH_1	50	326	1.5e-30	PFAM

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.9%
3x: 99.4%
10x: 97.2%
20x: 90.9%

Validation Efficiency

98% (55/56)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acot5	A	G	12: 84,122,328 (GRCm39)	D304G	probably benign	Het
Acyp2	C	T	11: 30,456,354 (GRCm39)	E98K	possibly damaging	Het
Akap9	A	G	5: 4,093,925 (GRCm39)	N2149S	probably damaging	Het
Akp3	T	A	1: 87,055,263 (GRCm39)	Y437N	probably damaging	Het
Anks1b	C	T	10: 90,194,910 (GRCm39)	T530I	probably damaging	Het
Bltp2	T	C	11: 78,176,294 (GRCm39)	F1799L	probably damaging	Het
Bnc2	C	T	4: 84,474,137 (GRCm39)	R3H	probably benign	Het
Cald1	A	T	6: 34,723,273 (GRCm39)		probably benign	Het
Capn9	A	G	8: 125,315,817 (GRCm39)	T87A	probably damaging	Het
Ccdc88c	A	G	12: 100,934,613 (GRCm39)	L175P	probably damaging	Het
Cd226	T	C	18: 89,225,343 (GRCm39)	V80A	probably damaging	Het
Cd44	A	T	2: 102,675,742 (GRCm39)	N310K	probably benign	Het
Cenpc1	T	A	5: 86,160,122 (GRCm39)	K905N	probably damaging	Het
Cept1	A	T	3: 106,440,759 (GRCm39)	D133E	probably damaging	Het
Cltc	T	C	11: 86,594,955 (GRCm39)	H1381R	possibly damaging	Het
Col4a4	T	A	1: 82,470,340 (GRCm39)	T730S	unknown	Het
Col6a4	A	T	9: 105,945,120 (GRCm39)	M998K	probably benign	Het
Cpne6	T	C	14: 55,750,516 (GRCm39)	V119A	probably benign	Het
Ddx54	G	T	5: 120,761,645 (GRCm39)	A474S	probably benign	Het
Dmbx1	G	T	4: 115,775,373 (GRCm39)	N302K	probably damaging	Het
Dnah8	A	G	17: 30,882,279 (GRCm39)	E617G	probably benign	Het
Ei24	A	G	9: 36,704,603 (GRCm39)	V10A	probably benign	Het
Elp3	A	G	14: 65,768,989 (GRCm39)	V543A	probably benign	Het
Frmd3	T	C	4: 74,088,928 (GRCm39)	I375T	possibly damaging	Het
Gm6408	A	G	5: 146,421,067 (GRCm39)	D232G	possibly damaging	Het
Inmt	A	T	6: 55,151,933 (GRCm39)	Y12*	probably null	Het
Inpp5k	G	T	11: 75,523,926 (GRCm39)	A44S	probably damaging	Het
Kalrn	T	A	16: 34,177,713 (GRCm39)	T169S	probably damaging	Het
Kif28	A	T	1: 179,523,355 (GRCm39)	F992I	probably damaging	Het
Kmt2c	A	T	5: 25,489,203 (GRCm39)	Y1199N	probably damaging	Het
Large2	C	T	2: 92,196,403 (GRCm39)	E475K	probably benign	Het
Mroh2b	T	A	15: 4,942,366 (GRCm39)		probably null	Het
Mrpl42	T	C	10: 95,336,341 (GRCm39)		probably benign	Het
Muc5b	A	T	7: 141,411,116 (GRCm39)	H1354L	unknown	Het
Myof	C	A	19: 37,928,304 (GRCm39)	E1095*	probably null	Het
Ncor2	A	G	5: 125,110,505 (GRCm39)	V1385A	probably damaging	Het
Nr5a2	T	C	1: 136,773,280 (GRCm39)	Y474C	probably damaging	Het
Or1j10	A	G	2: 36,267,322 (GRCm39)	D178G	probably damaging	Het
Or5a21	C	T	19: 12,311,008 (GRCm39)	D71N	probably damaging	Het
Or5l13	A	T	2: 87,780,145 (GRCm39)		probably null	Het
Pogz	A	G	3: 94,763,428 (GRCm39)	T67A	possibly damaging	Het
Prep	T	A	10: 44,948,225 (GRCm39)		probably null	Het
Prf1	A	G	10: 61,138,807 (GRCm39)	D255G	probably damaging	Het
Psme2	A	G	14: 55,827,539 (GRCm39)	L24P	probably damaging	Het
Scmh1	T	A	4: 120,362,712 (GRCm39)		probably null	Het
Scpep1	A	G	11: 88,820,139 (GRCm39)	V383A	possibly damaging	Het
Slc4a10	A	T	2: 62,073,775 (GRCm39)	N279I	probably benign	Het
Sphkap	T	C	1: 83,245,126 (GRCm39)	S1498G	probably benign	Het
Spinkl	C	A	18: 44,301,206 (GRCm39)	S44I	probably damaging	Het
Tanc2	G	A	11: 105,758,543 (GRCm39)	R768Q	probably damaging	Het
Tle5	T	C	10: 81,397,098 (GRCm39)	S25P	probably damaging	Het
Tmem213	A	G	6: 38,086,386 (GRCm39)	Q14R	probably benign	Het
Tns1	A	T	1: 73,967,256 (GRCm39)	Y1172*	probably null	Het
Ugt2b37	A	C	5: 87,402,036 (GRCm39)	I198M	probably benign	Het
Usp6nl	G	T	2: 6,446,150 (GRCm39)	R709L	probably damaging	Het
Zer1	A	G	2: 29,995,009 (GRCm39)	L462P	probably damaging	Het
Zfhx2	A	G	14: 55,311,462 (GRCm39)	S411P	probably benign	Het

Other mutations in Usp17lb

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01559:Usp17lb	APN	7	104,490,436 (GRCm39)	missense	probably damaging	0.98
IGL01571:Usp17lb	APN	7	104,489,588 (GRCm39)	missense	possibly damaging	0.59
IGL01624:Usp17lb	APN	7	104,491,720 (GRCm39)	utr 5 prime	probably benign
IGL02582:Usp17lb	APN	7	104,489,937 (GRCm39)	missense	probably damaging	1.00
IGL03193:Usp17lb	APN	7	104,490,484 (GRCm39)	missense	possibly damaging	0.46
R0399:Usp17lb	UTSW	7	104,490,358 (GRCm39)	missense	possibly damaging	0.81
R0420:Usp17lb	UTSW	7	104,489,746 (GRCm39)	missense	probably benign
R1202:Usp17lb	UTSW	7	104,491,695 (GRCm39)	missense	probably damaging	0.98
R1628:Usp17lb	UTSW	7	104,490,048 (GRCm39)	missense	probably damaging	1.00
R2085:Usp17lb	UTSW	7	104,489,622 (GRCm39)	missense	possibly damaging	0.73
R2214:Usp17lb	UTSW	7	104,490,639 (GRCm39)	missense	probably benign	0.36
R2283:Usp17lb	UTSW	7	104,489,859 (GRCm39)	missense	possibly damaging	0.68
R2866:Usp17lb	UTSW	7	104,489,955 (GRCm39)	missense	probably damaging	1.00
R3433:Usp17lb	UTSW	7	104,490,855 (GRCm39)	missense	possibly damaging	0.89
R5004:Usp17lb	UTSW	7	104,490,884 (GRCm39)	missense	probably benign	0.00
R5090:Usp17lb	UTSW	7	104,490,290 (GRCm39)	missense	probably benign	0.06
R5143:Usp17lb	UTSW	7	104,490,685 (GRCm39)	missense	probably damaging	1.00
R5366:Usp17lb	UTSW	7	104,489,615 (GRCm39)	missense	possibly damaging	0.95
R5568:Usp17lb	UTSW	7	104,490,415 (GRCm39)	missense	probably damaging	1.00
R5605:Usp17lb	UTSW	7	104,489,847 (GRCm39)	missense	probably benign	0.00
R5647:Usp17lb	UTSW	7	104,489,881 (GRCm39)	missense	possibly damaging	0.92
R5981:Usp17lb	UTSW	7	104,490,394 (GRCm39)	missense	probably damaging	1.00
R6114:Usp17lb	UTSW	7	104,489,571 (GRCm39)	missense	possibly damaging	0.87
R6185:Usp17lb	UTSW	7	104,490,631 (GRCm39)	missense	probably benign	0.22
R6279:Usp17lb	UTSW	7	104,489,898 (GRCm39)	missense	probably damaging	1.00
R6300:Usp17lb	UTSW	7	104,489,898 (GRCm39)	missense	probably damaging	1.00
R6891:Usp17lb	UTSW	7	104,490,307 (GRCm39)	missense	probably benign	0.02
R7000:Usp17lb	UTSW	7	104,490,492 (GRCm39)	missense	probably damaging	1.00
R7137:Usp17lb	UTSW	7	104,490,798 (GRCm39)	missense	probably benign	0.15
R7318:Usp17lb	UTSW	7	104,490,340 (GRCm39)	missense	probably benign	0.03
R7372:Usp17lb	UTSW	7	104,490,913 (GRCm39)	splice site	probably null
R7809:Usp17lb	UTSW	7	104,490,420 (GRCm39)	missense	probably damaging	1.00
R7834:Usp17lb	UTSW	7	104,490,718 (GRCm39)	missense	probably damaging	1.00
R8008:Usp17lb	UTSW	7	104,490,481 (GRCm39)	missense	possibly damaging	0.82
R8283:Usp17lb	UTSW	7	104,490,013 (GRCm39)	missense	probably damaging	0.98
R8385:Usp17lb	UTSW	7	104,489,830 (GRCm39)	missense	possibly damaging	0.82
R8942:Usp17lb	UTSW	7	104,490,583 (GRCm39)	missense	possibly damaging	0.49
R8996:Usp17lb	UTSW	7	104,490,889 (GRCm39)	missense	probably benign	0.17
R9598:Usp17lb	UTSW	7	104,489,718 (GRCm39)	missense	probably benign	0.07
R9697:Usp17lb	UTSW	7	104,490,495 (GRCm39)	missense	possibly damaging	0.69
X0021:Usp17lb	UTSW	7	104,490,523 (GRCm39)	missense	probably damaging	1.00
Z1088:Usp17lb	UTSW	7	104,490,336 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- ATTCCAGGAGTTGCTGGAGAG -3'
(R):5'- CCTTGCACAGAAGATGCAGG -3'

Sequencing Primer
(F):5'- TTGCTGGAGAGGATATACAGACCTC -3'
(R):5'- GGAGAGCCCTGCGAAAAC -3'

Posted On

2017-06-26