Mutagenetix > Incidental Mutation

Incidental Mutation 'R7109:Ikbip'

551407

Institutional Source

Beutler Lab

Gene Symbol

Ikbip

Ensembl Gene

ENSMUSG00000019975

Gene Name

IKBKB interacting protein

Synonyms

1200009F10Rik, 1700023M03Rik

MMRRC Submission

045201-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.075) question?

Stock #

R7109 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

90918802-90938469 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 90919090 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 34 (D34E)

Ref Sequence

ENSEMBL: ENSMUSP00000020149 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020149] [ENSMUST00000020150] [ENSMUST00000020157] [ENSMUST00000159110] [ENSMUST00000160788] [ENSMUST00000161987] [ENSMUST00000162618]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000020149
AA Change: D34E

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000020149
Gene: ENSMUSG00000019975
AA Change: D34E

Domain	Start	End	E-Value	Type
low complexity region	42	58	N/A	INTRINSIC
coiled coil region	80	154	N/A	INTRINSIC
coiled coil region	175	257	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000020150
AA Change: D34E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000020150
Gene: ENSMUSG00000019975
AA Change: D34E

Domain	Start	End	E-Value	Type
low complexity region	42	58	N/A	INTRINSIC
coiled coil region	89	109	N/A	INTRINSIC
coiled coil region	234	261	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000020157

SMART Domains

Protein: ENSMUSP00000020157
Gene: ENSMUSG00000019979

Domain	Start	End	E-Value	Type
Pfam:CARD	6	90	7.3e-22	PFAM
Pfam:NB-ARC	129	414	1.7e-77	PFAM
WD40	604	643	1.35e-5	SMART
WD40	646	685	1.04e-11	SMART
WD40	688	729	2.98e-7	SMART
WD40	732	771	9.88e-13	SMART
WD40	780	825	1.28e1	SMART
WD40	828	868	1.43e0	SMART
WD40	871	910	3.24e-8	SMART
WD40	952	989	2.57e0	SMART
WD40	992	1031	1.09e-5	SMART
WD40	1033	1071	2.09e-2	SMART
WD40	1074	1113	2.93e-6	SMART
WD40	1116	1155	8.55e-8	SMART
WD40	1168	1204	4.55e-3	SMART
Blast:WD40	1207	1246	5e-18	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000159110

SMART Domains

Protein: ENSMUSP00000125291
Gene: ENSMUSG00000019979

Domain	Start	End	E-Value	Type
Pfam:CARD	6	90	7.4e-21	PFAM
Pfam:NB-ARC	129	414	6.9e-71	PFAM
WD40	604	643	1.35e-5	SMART
WD40	646	685	1.04e-11	SMART
WD40	688	729	2.98e-7	SMART
WD40	732	771	9.88e-13	SMART
WD40	780	825	1.28e1	SMART
WD40	828	868	1.43e0	SMART
WD40	871	910	3.24e-8	SMART
WD40	952	989	2.57e0	SMART
WD40	992	1031	1.09e-5	SMART
WD40	1033	1071	2.09e-2	SMART
WD40	1074	1113	2.93e-6	SMART
WD40	1116	1155	8.55e-8	SMART
WD40	1168	1204	4.55e-3	SMART
Blast:WD40	1207	1246	5e-18	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000160788

SMART Domains

Protein: ENSMUSP00000124968
Gene: ENSMUSG00000019979

Domain	Start	End	E-Value	Type
Pfam:CARD	6	90	1e-21	PFAM
Pfam:NB-ARC	129	238	6.9e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000161987

SMART Domains

Protein: ENSMUSP00000124422
Gene: ENSMUSG00000019979

Domain	Start	End	E-Value	Type
Pfam:CARD	6	90	1e-21	PFAM
Pfam:NB-ARC	129	238	6.9e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000162618

SMART Domains

Protein: ENSMUSP00000124134
Gene: ENSMUSG00000019979

Domain	Start	End	E-Value	Type
Pfam:CARD	6	90	1.1e-20	PFAM
Pfam:NB-ARC	118	403	8.8e-72	PFAM
WD40	593	632	1.35e-5	SMART
WD40	635	674	1.04e-11	SMART
WD40	677	718	2.98e-7	SMART
WD40	721	760	9.88e-13	SMART
WD40	769	814	1.28e1	SMART
WD40	817	857	1.43e0	SMART
WD40	860	899	3.24e-8	SMART
WD40	941	978	2.57e0	SMART
WD40	981	1020	1.09e-5	SMART
WD40	1022	1060	2.09e-2	SMART
WD40	1063	1102	2.93e-6	SMART
WD40	1105	1144	8.55e-8	SMART
WD40	1157	1193	4.55e-3	SMART
Blast:WD40	1196	1235	5e-18	BLAST

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921509C19Rik	T	G	2: 151,315,673 (GRCm39)	K2Q	probably damaging	Het
Abtb2	T	C	2: 103,545,860 (GRCm39)	Y903H	probably benign	Het
Adamtsl3	C	T	7: 82,261,069 (GRCm39)	P29S		Het
Alcam	T	A	16: 52,097,192 (GRCm39)	T355S	probably damaging	Het
Anapc1	A	G	2: 128,516,522 (GRCm39)	V404A	probably benign	Het
Bst2	A	G	8: 71,989,926 (GRCm39)	F49S	possibly damaging	Het
C1qtnf9	G	C	14: 61,017,019 (GRCm39)	W183S	probably benign	Het
Camsap3	A	G	8: 3,648,087 (GRCm39)	I132V	possibly damaging	Het
Cchcr1	T	A	17: 35,828,838 (GRCm39)		probably null	Het
Cenpk	A	G	13: 104,367,256 (GRCm39)	K31E	probably benign	Het
Cfap221	T	C	1: 119,853,301 (GRCm39)	K798E	possibly damaging	Het
Copb2	T	A	9: 98,463,333 (GRCm39)		probably null	Het
Dennd1a	T	A	2: 37,938,804 (GRCm39)	Y102F	probably damaging	Het
Eif2ak4	C	T	2: 118,235,532 (GRCm39)	P88S	probably damaging	Het
Epha6	C	A	16: 59,503,031 (GRCm39)	V959F	probably damaging	Het
Fam193a	C	A	5: 34,623,165 (GRCm39)	T1251K	possibly damaging	Het
Herc1	A	T	9: 66,389,171 (GRCm39)	Q3896L	probably benign	Het
Insr	A	G	8: 3,308,481 (GRCm39)	V185A	probably benign	Het
Jakmip1	C	T	5: 37,332,109 (GRCm39)	Q930*	probably null	Het
Klc1	A	G	12: 111,743,299 (GRCm39)	I209V	probably benign	Het
Lrrk2	T	A	15: 91,648,985 (GRCm39)	L1660M	probably damaging	Het
Mbd3l1	G	T	9: 18,396,210 (GRCm39)	D112Y	possibly damaging	Het
Mrps2	T	A	2: 28,358,258 (GRCm39)	V16E	probably benign	Het
Ncoa1	G	A	12: 4,372,978 (GRCm39)	T141I	possibly damaging	Het
Ndst2	G	T	14: 20,779,911 (GRCm39)	R110S	probably damaging	Het
Nlrp2	A	G	7: 5,331,616 (GRCm39)	V260A	probably damaging	Het
Or4d10	A	G	19: 12,051,576 (GRCm39)	I140T	probably benign	Het
Or51a6	A	T	7: 102,604,460 (GRCm39)	V116E	probably damaging	Het
Or5p1	A	G	7: 107,916,959 (GRCm39)	N286S	probably damaging	Het
Or7g16	A	T	9: 18,726,904 (GRCm39)	S229T	probably benign	Het
Pah	T	C	10: 87,406,148 (GRCm39)	V262A	probably damaging	Het
Pcnt	T	G	10: 76,205,738 (GRCm39)	E2538A	probably damaging	Het
Pdxk	T	A	10: 78,282,810 (GRCm39)	I162F	probably damaging	Het
Plod2	T	C	9: 92,455,650 (GRCm39)	F110L	probably damaging	Het
Pm20d2	A	T	4: 33,187,186 (GRCm39)	L154Q	probably damaging	Het
Podxl2	C	T	6: 88,820,566 (GRCm39)	V445I	possibly damaging	Het
Ppp1r3a	A	T	6: 14,719,235 (GRCm39)	W560R	probably benign	Het
Rasal3	A	G	17: 32,611,683 (GRCm39)	S815P	probably damaging	Het
Rdm1	A	G	11: 101,524,654 (GRCm39)	K196E	probably damaging	Het
Rsf1	CG	CGACGGCGGGG	7: 97,229,115 (GRCm39)		probably benign	Het
Scn1a	T	C	2: 66,181,286 (GRCm39)	D79G	possibly damaging	Het
Slc22a21	A	G	11: 53,870,329 (GRCm39)	Y119H	possibly damaging	Het
Stip1	C	T	19: 6,999,178 (GRCm39)	G467S	possibly damaging	Het
Synrg	C	A	11: 83,930,498 (GRCm39)	A1280E	possibly damaging	Het
Szt2	A	G	4: 118,232,676 (GRCm39)	C2396R	unknown	Het
Trappc3	A	G	4: 126,167,726 (GRCm39)	N95S	probably benign	Het
Tulp4	C	T	17: 6,282,055 (GRCm39)	H695Y	probably damaging	Het
Ush2a	T	A	1: 188,113,681 (GRCm39)	D633E	probably benign	Het
Wasl	G	A	6: 24,633,186 (GRCm39)	P151S	probably benign	Het
Wwp2	A	G	8: 108,209,988 (GRCm39)	N122S	probably benign	Het
Zfp51	A	G	17: 21,683,831 (GRCm39)	R149G	possibly damaging	Het
Zfp764	A	G	7: 127,003,887 (GRCm39)	S415P	possibly damaging	Het

Other mutations in Ikbip

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02008:Ikbip	APN	10	90,929,119 (GRCm39)	critical splice donor site	probably null
IGL02166:Ikbip	APN	10	90,931,652 (GRCm39)	missense	probably damaging	0.97
IGL02493:Ikbip	APN	10	90,932,456 (GRCm39)	missense	probably damaging	0.99
IGL02591:Ikbip	APN	10	90,932,154 (GRCm39)	missense	probably damaging	1.00
PIT4418001:Ikbip	UTSW	10	90,932,395 (GRCm39)	missense	probably benign	0.02
R1763:Ikbip	UTSW	10	90,932,343 (GRCm39)	missense	probably damaging	1.00
R2031:Ikbip	UTSW	10	90,932,474 (GRCm39)	missense	probably benign
R4436:Ikbip	UTSW	10	90,937,751 (GRCm39)	missense	probably damaging	0.97
R4981:Ikbip	UTSW	10	90,931,848 (GRCm39)	missense	probably benign
R6658:Ikbip	UTSW	10	90,932,181 (GRCm39)	missense	probably benign	0.00
R6671:Ikbip	UTSW	10	90,932,469 (GRCm39)	splice site	probably null
R7595:Ikbip	UTSW	10	90,932,447 (GRCm39)	missense	probably benign
R7596:Ikbip	UTSW	10	90,918,891 (GRCm39)	unclassified	probably benign
R7840:Ikbip	UTSW	10	90,937,617 (GRCm39)	missense	possibly damaging	0.90
R8278:Ikbip	UTSW	10	90,932,190 (GRCm39)	missense	probably benign	0.00
R8868:Ikbip	UTSW	10	90,932,187 (GRCm39)	missense	possibly damaging	0.53
R8933:Ikbip	UTSW	10	90,919,092 (GRCm39)	missense	probably benign	0.43
R9261:Ikbip	UTSW	10	90,932,249 (GRCm39)	missense	possibly damaging	0.56

Predicted Primers

PCR Primer
(F):5'- TGAGACGTCTGCTCCTCTAG -3'
(R):5'- AGGAGCATGCTACCAGAACATTG -3'

Sequencing Primer
(F):5'- ACTCAGTCGGGTAGCGGAATC -3'
(R):5'- GCTACCAGAACATTGTTAAAAGAGC -3'

Posted On

2019-05-15