Mutagenetix > Incidental Mutation

Incidental Mutation 'R7150:Vmp1'

554079

Institutional Source

Beutler Lab

Gene Symbol

Vmp1

Ensembl Gene

ENSMUSG00000018171

Gene Name

vacuole membrane protein 1

Synonyms

Tmem49, Tango5, 4930579A11Rik, 3110098I04Rik

MMRRC Submission

045252-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.964) question?

Stock #

R7150 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

86474691-86574662 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 86477402 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 333 (S333T)

Ref Sequence

ENSEMBL: ENSMUSP00000018315 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000018315]

AlphaFold

Q99KU0

Predicted Effect

probably benign
Transcript: ENSMUST00000018315
AA Change: S333T

PolyPhen 2 Score 0.078 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000018315
Gene: ENSMUSG00000018171
AA Change: S333T

Domain	Start	End	E-Value	Type
transmembrane domain	78	95	N/A	INTRINSIC
transmembrane domain	115	137	N/A	INTRINSIC
Pfam:SNARE_assoc	190	303	1.5e-10	PFAM
transmembrane domain	306	328	N/A	INTRINSIC
transmembrane domain	371	388	N/A	INTRINSIC

Meta Mutation Damage Score

0.0669

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

98% (59/60)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a transmembrane protein that plays a key regulatory role in the process of autophagy. The ectopic overexpression of the encoded protein in cultured cells triggers autophagy even under nutrient-rich conditions. This gene is overexpressed in pancreatitis affected acinar cells where the encoded protein mediates sequestration and degradation of potentially deleterious activated zymogen granules in a process termed, zymophagy. [provided by RefSeq, Jul 2016]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2810004N23Rik	T	C	8: 125,589,653 (GRCm39)	D20G	possibly damaging	Het
5430401F13Rik	T	C	6: 131,529,630 (GRCm39)	S75P	probably benign	Het
Acad8	A	T	9: 26,889,750 (GRCm39)	F315I	probably damaging	Het
Adcy5	A	G	16: 35,118,904 (GRCm39)	Y1085C	probably damaging	Het
Aldh1a7	T	C	19: 20,693,382 (GRCm39)	K179R	probably damaging	Het
Arhgap10	C	T	8: 77,977,583 (GRCm39)	G776R	probably damaging	Het
Arhgap35	A	C	7: 16,296,491 (GRCm39)	F858C	probably damaging	Het
Ash1l	C	T	3: 88,984,381 (GRCm39)	R2957W	probably damaging	Het
Atp6ap1l	G	T	13: 91,031,848 (GRCm39)	A278E	probably damaging	Het
Btn1a1	A	T	13: 23,643,521 (GRCm39)	D309E	probably damaging	Het
Casd1	C	T	6: 4,624,211 (GRCm39)	R335C	probably benign	Het
Ceacam3	A	G	7: 16,885,487 (GRCm39)	Q30R		Het
Cfap20	C	T	8: 96,148,795 (GRCm39)	C119Y	probably damaging	Het
Cntrl	A	T	2: 35,055,457 (GRCm39)		probably null	Het
Crot	A	G	5: 9,037,878 (GRCm39)	V146A	probably damaging	Het
Cx3cl1	A	G	8: 95,506,591 (GRCm39)	S199G	probably damaging	Het
Ddhd1	A	T	14: 45,895,263 (GRCm39)	L69Q	probably damaging	Het
Dnah12	T	C	14: 26,583,689 (GRCm39)	F3195L	probably damaging	Het
Dpy19l3	A	T	7: 35,408,055 (GRCm39)	D450E	probably benign	Het
Ercc3	A	T	18: 32,390,325 (GRCm39)	N538I	probably damaging	Het
Fzd1	A	T	5: 4,806,145 (GRCm39)	V479E	probably benign	Het
Gart	T	C	16: 91,425,351 (GRCm39)	Y638C	possibly damaging	Het
Gm2381	C	A	7: 42,469,888 (GRCm39)	V79L	probably benign	Het
Gucy1b1	T	C	3: 81,950,469 (GRCm39)	Y312C	probably damaging	Het
Hecw1	T	A	13: 14,609,045 (GRCm39)	M1L	probably benign	Het
Ip6k2	A	G	9: 108,673,930 (GRCm39)	I99V	unknown	Het
Itgb5	C	T	16: 33,761,013 (GRCm39)	T616I	probably benign	Het
Kmt2c	A	C	5: 25,505,360 (GRCm39)	V3316G	possibly damaging	Het
Lama3	C	T	18: 12,601,346 (GRCm39)	R1008C	probably damaging	Het
Lin54	T	C	5: 100,633,159 (GRCm39)	D175G	possibly damaging	Het
Lrp2	A	G	2: 69,318,395 (GRCm39)	S2019P	probably damaging	Het
Lrrc9	A	G	12: 72,513,726 (GRCm39)	E528G	probably benign	Het
Lyz3	T	C	10: 117,073,647 (GRCm39)	N62S	probably benign	Het
Mto1	A	G	9: 78,364,565 (GRCm39)	H299R	probably damaging	Het
Myo19	G	A	11: 84,796,439 (GRCm39)	G684R	probably benign	Het
Or14c45	A	C	7: 86,176,322 (GRCm39)	D119A	probably damaging	Het
Or7g32	A	T	9: 19,408,145 (GRCm39)	M34L	probably benign	Het
Pcdh18	C	A	3: 49,709,143 (GRCm39)	C724F	probably benign	Het
Pcdha3	A	T	18: 37,080,165 (GRCm39)	K302N	probably benign	Het
Pcdhgb2	T	C	18: 37,825,300 (GRCm39)	F764L	possibly damaging	Het
Pik3cb	C	A	9: 98,975,143 (GRCm39)	G246W	probably damaging	Het
Polr2m	A	T	9: 71,390,626 (GRCm39)	I192N	probably damaging	Het
Polr2m	G	T	9: 71,390,815 (GRCm39)	T129K	probably benign	Het
Pramel48	A	G	5: 95,630,680 (GRCm39)	I186V	possibly damaging	Het
Ptpn4	C	T	1: 119,619,475 (GRCm39)		probably null	Het
Scgb1b19	A	T	7: 32,986,940 (GRCm39)	K30N	possibly damaging	Het
Shpk	A	G	11: 73,104,315 (GRCm39)	T155A	probably damaging	Het
Slit3	T	C	11: 35,461,546 (GRCm39)	Y261H	probably damaging	Het
Sox13	A	G	1: 133,313,243 (GRCm39)	F438L	possibly damaging	Het
Sphk1	A	T	11: 116,425,907 (GRCm39)	E61D	probably benign	Het
St18	A	G	1: 6,873,243 (GRCm39)	D326G	probably damaging	Het
Syde1	G	A	10: 78,422,032 (GRCm39)	Q566*	probably null	Het
Tacc2	A	G	7: 130,330,807 (GRCm39)	T254A	probably benign	Het
Tbc1d1	A	G	5: 64,330,827 (GRCm39)	E2G	probably damaging	Het
Trim5	A	T	7: 103,926,017 (GRCm39)	N181K	probably damaging	Het
Trpc7	A	T	13: 56,931,509 (GRCm39)	I730K	probably benign	Het
Uqcrc1	T	A	9: 108,776,926 (GRCm39)	M377K	probably benign	Het
Vmn2r4	T	C	3: 64,305,898 (GRCm39)	N508S	probably benign	Het
Vps50	T	A	6: 3,578,854 (GRCm39)	M639K	possibly damaging	Het
Zfp874b	A	T	13: 67,622,622 (GRCm39)	C225*	probably null	Het

Other mutations in Vmp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02207:Vmp1	APN	11	86,498,019 (GRCm39)	missense	possibly damaging	0.47
R1179:Vmp1	UTSW	11	86,498,055 (GRCm39)	missense	probably damaging	1.00
R1500:Vmp1	UTSW	11	86,552,026 (GRCm39)	missense	possibly damaging	0.78
R1847:Vmp1	UTSW	11	86,534,413 (GRCm39)	nonsense	probably null
R4094:Vmp1	UTSW	11	86,534,406 (GRCm39)	missense	probably benign	0.03
R4256:Vmp1	UTSW	11	86,552,014 (GRCm39)	missense	probably benign	0.02
R4817:Vmp1	UTSW	11	86,492,879 (GRCm39)	missense	probably benign	0.01
R5267:Vmp1	UTSW	11	86,554,377 (GRCm39)	missense	probably benign	0.00
R5618:Vmp1	UTSW	11	86,554,388 (GRCm39)	missense	probably benign	0.00
R5921:Vmp1	UTSW	11	86,477,336 (GRCm39)	missense	probably benign
R6800:Vmp1	UTSW	11	86,556,913 (GRCm39)	splice site	probably null
R7216:Vmp1	UTSW	11	86,492,859 (GRCm39)	missense	probably damaging	0.98
R7582:Vmp1	UTSW	11	86,476,225 (GRCm39)	missense	probably benign	0.13
R7593:Vmp1	UTSW	11	86,477,377 (GRCm39)	missense	probably benign	0.01
R8291:Vmp1	UTSW	11	86,498,064 (GRCm39)	missense	probably damaging	1.00
R8747:Vmp1	UTSW	11	86,492,885 (GRCm39)	missense	probably damaging	1.00
R9684:Vmp1	UTSW	11	86,476,156 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CCTTGTTTCTGAAAAGCCACTAG -3'
(R):5'- TCACAGGATTGCTGTGACCC -3'

Sequencing Primer
(F):5'- GTTTCTGAAAAGCCACTAGACATAG -3'
(R):5'- CAGGATTGCTGTGACCCTGATTG -3'

Posted On

2019-05-15