Mutagenetix > Incidental Mutation

Incidental Mutation 'PIT4283001:Gramd2b'

554386

Institutional Source

Beutler Lab

Gene Symbol

Gramd2b

Ensembl Gene

ENSMUSG00000001700

Gene Name

GRAM domain containing 2B

Synonyms

9130427A09Rik, Gramd3, 9030613F08Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

PIT4283001 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

56533412-56636864 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 56622735 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Valine at position 299 (E299V)

Ref Sequence

ENSEMBL: ENSMUSP00000068453 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070166]

AlphaFold

Q6PEM6

Predicted Effect

probably damaging
Transcript: ENSMUST00000070166
AA Change: E299V

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000068453
Gene: ENSMUSG00000001700
AA Change: E299V

Domain	Start	End	E-Value	Type
low complexity region	69	82	N/A	INTRINSIC
low complexity region	86	104	N/A	INTRINSIC
GRAM	110	177	3.06e-23	SMART
transmembrane domain	342	364	N/A	INTRINSIC
coiled coil region	404	430	N/A	INTRINSIC

Coding Region Coverage

1x: 93.2%
3x: 91.1%
10x: 86.5%
20x: 76.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610028H24Rik	A	C	10: 76,285,093 (GRCm39)	M1L	probably benign	Het
Aacs	C	A	5: 125,561,719 (GRCm39)	A119D	probably damaging	Het
Abcb1b	T	A	5: 8,863,693 (GRCm39)	V216D	probably damaging	Het
Adap2	T	A	11: 80,068,089 (GRCm39)	L367H	probably damaging	Het
Adcy7	T	A	8: 89,042,120 (GRCm39)	M373K	probably damaging	Het
Arhgap31	A	G	16: 38,429,354 (GRCm39)	L507P	probably damaging	Het
Brinp3	C	T	1: 146,777,161 (GRCm39)	T536I	probably damaging	Het
Cacna1b	T	C	2: 24,521,953 (GRCm39)	D1718G	probably damaging	Het
Cacna2d1	A	C	5: 16,507,292 (GRCm39)	Y347S	probably benign	Het
Carf	C	A	1: 60,167,161 (GRCm39)	P165T	probably benign	Het
Cplx3	T	C	9: 57,523,359 (GRCm39)	E66G	probably damaging	Het
Dnaaf5	A	G	5: 139,151,917 (GRCm39)	T523A	probably benign	Het
Dnajc10	T	C	2: 80,161,739 (GRCm39)	S326P	probably benign	Het
Eif4enif1	A	T	11: 3,184,464 (GRCm39)	E528D	probably damaging	Het
Elp2	G	A	18: 24,755,187 (GRCm39)	D392N	probably damaging	Het
Fat1	T	C	8: 45,482,577 (GRCm39)	S3079P	probably damaging	Het
Fat1	G	T	8: 45,490,244 (GRCm39)	V3719F	probably damaging	Het
Fat3	T	A	9: 15,917,897 (GRCm39)	S1509C	possibly damaging	Het
Fcsk	A	G	8: 111,614,064 (GRCm39)	V693A	probably benign	Het
Frmpd4	C	T	X: 166,512,030 (GRCm39)	R8H	possibly damaging	Het
Glud1	T	A	14: 34,058,129 (GRCm39)	I380N	probably damaging	Het
Gnl2	A	G	4: 124,940,099 (GRCm39)	S324G	probably damaging	Het
Gramd1b	C	T	9: 40,366,752 (GRCm39)	G72D	probably benign	Het
Grin1	C	T	2: 25,187,864 (GRCm39)	R544H	probably damaging	Het
Ifitm7	A	T	16: 13,801,471 (GRCm39)	V96E	probably damaging	Het
Lsm14b	T	A	2: 179,674,336 (GRCm39)	M293K	probably benign	Het
Marf1	T	A	16: 13,946,432 (GRCm39)	T1230S	probably benign	Het
Morc2b	T	A	17: 33,355,042 (GRCm39)	H910L	probably benign	Het
Mylip	A	G	13: 45,560,110 (GRCm39)	N247S	possibly damaging	Het
Nup50l	A	G	6: 96,142,696 (GRCm39)	I116T	probably benign	Het
Or4a73	T	C	2: 89,420,572 (GRCm39)	M296V	probably benign	Het
Osbpl3	T	C	6: 50,323,068 (GRCm39)	S264G	probably benign	Het
Pds5b	C	T	5: 150,701,774 (GRCm39)	R802W	probably damaging	Het
Pik3cg	T	C	12: 32,255,864 (GRCm39)	E41G	probably damaging	Het
Plk3	A	G	4: 116,990,489 (GRCm39)	I112T	probably damaging	Het
Pwp2	A	G	10: 78,020,921 (GRCm39)	M1T	probably null	Het
Rtel1	T	C	2: 180,988,683 (GRCm39)	I417T	probably benign	Het
Sirt1	A	T	10: 63,157,565 (GRCm39)	N616K	probably benign	Het
Sirt6	T	C	10: 81,458,252 (GRCm39)	S334G	possibly damaging	Het
Strc	T	C	2: 121,205,788 (GRCm39)	Y827C	probably damaging	Het
Taf1b	T	C	12: 24,597,594 (GRCm39)	Y385H	possibly damaging	Het
Tgm5	T	C	2: 120,902,066 (GRCm39)	E201G	possibly damaging	Het
Thbd	G	C	2: 148,249,003 (GRCm39)	N288K	probably benign	Het
Ush2a	T	A	1: 188,169,064 (GRCm39)	N1068K	probably benign	Het
Vmn2r52	T	C	7: 9,904,756 (GRCm39)	E361G	possibly damaging	Het
Vps13d	T	C	4: 144,835,158 (GRCm39)	N2736S		Het
Vwa5b1	A	G	4: 138,327,574 (GRCm39)	L334P	probably damaging	Het
Zan	A	G	5: 137,398,355 (GRCm39)	S4226P	unknown	Het
Zdhhc24	T	C	19: 4,928,778 (GRCm39)	M1T	probably null	Het

Other mutations in Gramd2b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01582:Gramd2b	APN	18	56,618,488 (GRCm39)	missense	probably damaging	0.99
IGL01903:Gramd2b	APN	18	56,607,101 (GRCm39)	missense	probably damaging	0.99
IGL02203:Gramd2b	APN	18	56,612,026 (GRCm39)	critical splice donor site	probably null
IGL03210:Gramd2b	APN	18	56,607,170 (GRCm39)	missense	probably benign
R0432:Gramd2b	UTSW	18	56,607,141 (GRCm39)	missense	probably benign	0.00
R1623:Gramd2b	UTSW	18	56,565,423 (GRCm39)	missense	probably benign	0.00
R4019:Gramd2b	UTSW	18	56,612,026 (GRCm39)	critical splice donor site	probably null
R4125:Gramd2b	UTSW	18	56,618,296 (GRCm39)	missense	probably damaging	1.00
R4750:Gramd2b	UTSW	18	56,565,372 (GRCm39)	missense	probably benign	0.44
R4927:Gramd2b	UTSW	18	56,618,523 (GRCm39)	missense	probably damaging	0.96
R5495:Gramd2b	UTSW	18	56,615,694 (GRCm39)	missense	probably damaging	1.00
R5866:Gramd2b	UTSW	18	56,607,108 (GRCm39)	missense	possibly damaging	0.93
R6443:Gramd2b	UTSW	18	56,618,457 (GRCm39)	missense	probably benign	0.00
R6672:Gramd2b	UTSW	18	56,565,408 (GRCm39)	missense	possibly damaging	0.49
R7030:Gramd2b	UTSW	18	56,618,321 (GRCm39)	missense	probably damaging	1.00
R7099:Gramd2b	UTSW	18	56,625,017 (GRCm39)	missense	probably benign	0.01
R7162:Gramd2b	UTSW	18	56,618,529 (GRCm39)	critical splice donor site	probably null
R7854:Gramd2b	UTSW	18	56,611,926 (GRCm39)	missense	probably damaging	1.00
R7975:Gramd2b	UTSW	18	56,618,451 (GRCm39)	missense	probably benign	0.00
R9758:Gramd2b	UTSW	18	56,611,972 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCACTCACGGGAGATCCATATC -3'
(R):5'- GCCCAGAACTAGGTACTACTTTAC -3'

Sequencing Primer
(F):5'- GGGAGATCCATATCATAGCCACTATG -3'
(R):5'- CCTGTGGACCATGATGTAGAACTC -3'

Posted On

2019-06-07