Mutagenetix > Incidental Mutation

Incidental Mutation 'R7528:Vmn1r172'

583123

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r172

Ensembl Gene

ENSMUSG00000035523

Gene Name

vomeronasal 1 receptor 172

Synonyms

V3R9, V1rd9

MMRRC Submission

045600-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.063) question?

Stock #

R7528 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

23357741-23360088 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 23359189 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Cysteine at position 25 (G25C)

Ref Sequence

ENSEMBL: ENSMUSP00000041653 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038694] [ENSMUST00000173101]

AlphaFold

Q9EPS4

Predicted Effect

probably damaging
Transcript: ENSMUST00000038694
AA Change: G25C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000041653
Gene: ENSMUSG00000035523
AA Change: G25C

Domain	Start	End	E-Value	Type
Pfam:TAS2R	8	301	7.1e-9	PFAM
Pfam:7tm_1	30	268	3.6e-9	PFAM
Pfam:V1R	43	301	7.2e-18	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000173101
AA Change: G25C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000133887
Gene: ENSMUSG00000035523
AA Change: G25C

Domain	Start	End	E-Value	Type
Pfam:TAS2R	8	301	7.2e-9	PFAM
Pfam:V1R	43	301	7.2e-18	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

100% (57/57)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc4	T	C	14: 118,767,317 (GRCm39)	E920G	probably damaging	Het
Acss2	A	C	2: 155,399,066 (GRCm39)	N443H	probably damaging	Het
Adam3	C	A	8: 25,167,279 (GRCm39)	A71S	unknown	Het
Agpat3	A	G	10: 78,123,746 (GRCm39)	L38P	probably damaging	Het
Akap9	C	G	5: 4,018,745 (GRCm39)	H1109D	probably benign	Het
Amtn	C	A	5: 88,526,711 (GRCm39)		probably null	Het
App	T	G	16: 84,775,146 (GRCm39)	Y497S	possibly damaging	Het
Bphl	T	A	13: 34,244,473 (GRCm39)	Y197N	probably damaging	Het
Btrc	T	A	19: 45,491,525 (GRCm39)	M160K	possibly damaging	Het
Ccdc181	A	C	1: 164,107,527 (GRCm39)	N70T	probably benign	Het
Cd55b	T	C	1: 130,347,473 (GRCm39)	N113D	possibly damaging	Het
Ctrb1	T	A	8: 112,413,783 (GRCm39)	I194F	probably benign	Het
Dnah2	T	C	11: 69,391,622 (GRCm39)	H691R	probably damaging	Het
Dnajc13	A	G	9: 104,056,164 (GRCm39)	V1579A	possibly damaging	Het
Dst	T	A	1: 34,333,603 (GRCm39)	F5030I	probably damaging	Het
Eppk1	G	A	15: 76,004,308 (GRCm39)		probably benign	Het
Fbxw4	T	C	19: 45,648,449 (GRCm39)	E7G	unknown	Het
Fos	T	A	12: 85,522,432 (GRCm39)	C154S	probably damaging	Het
Foxh1	A	G	15: 76,553,511 (GRCm39)	V97A	probably benign	Het
Gmeb1	G	A	4: 131,959,361 (GRCm39)	T231I	possibly damaging	Het
Golga3	T	A	5: 110,360,098 (GRCm39)	V1112E	probably damaging	Het
Gprin3	T	C	6: 59,331,017 (GRCm39)	D430G	possibly damaging	Het
Hpse2	T	C	19: 42,801,463 (GRCm39)	D441G	probably damaging	Het
Hydin	G	A	8: 111,107,204 (GRCm39)	W460*	probably null	Het
Ifi204	T	C	1: 173,579,406 (GRCm39)	I480V	probably benign	Het
Impg2	T	C	16: 56,080,743 (GRCm39)	V849A	possibly damaging	Het
Kars1	T	C	8: 112,737,866 (GRCm39)	D12G	probably benign	Het
Klhdc7a	A	T	4: 139,694,828 (GRCm39)	Y40N	probably damaging	Het
Krtap5-3	T	C	7: 141,755,219 (GRCm39)	C19R	unknown	Het
Macf1	G	A	4: 123,325,852 (GRCm39)	A5217V	possibly damaging	Het
Mlc1	A	T	15: 88,858,710 (GRCm39)	I146N	possibly damaging	Het
Myo3a	A	T	2: 22,270,925 (GRCm39)	R129*	probably null	Het
Nsun4	G	T	4: 115,891,391 (GRCm39)	Y329*	probably null	Het
Or4k1	A	G	14: 50,377,277 (GRCm39)	V273A	possibly damaging	Het
Or56a3b	T	C	7: 104,771,071 (GRCm39)	Y136H	probably damaging	Het
Pard3	G	A	8: 128,329,646 (GRCm39)	R1214H	probably damaging	Het
Phf20	T	A	2: 156,144,928 (GRCm39)	Y845*	probably null	Het
Pik3c2a	A	G	7: 115,993,474 (GRCm39)	I431T	probably damaging	Het
Plxna2	A	G	1: 194,494,464 (GRCm39)	S1894G	probably damaging	Het
Ppp1r7	C	T	1: 93,282,123 (GRCm39)	Q225*	probably null	Het
Ppp4r1	C	A	17: 66,120,493 (GRCm39)	T209K	probably damaging	Het
Prc1	T	C	7: 79,950,183 (GRCm39)		probably null	Het
Prex2	T	G	1: 11,274,316 (GRCm39)	D1329E	probably damaging	Het
Ptch1	C	T	13: 63,659,528 (GRCm39)	R1375H	probably benign	Het
Rab24	A	T	13: 55,468,921 (GRCm39)	C87S	probably damaging	Het
Rnf43	A	T	11: 87,622,954 (GRCm39)	Y558F	probably benign	Het
Serpinb6e	T	C	13: 34,016,474 (GRCm39)	I420V	possibly damaging	Het
Slain2	C	A	5: 73,072,143 (GRCm39)	S59*	probably null	Het
Slfn3	A	G	11: 83,105,731 (GRCm39)	D576G	probably benign	Het
Sptbn4	A	G	7: 27,141,960 (GRCm39)	M11T	probably benign	Het
Tdh	T	C	14: 63,731,460 (GRCm39)	D238G	probably damaging	Het
Top2b	T	A	14: 16,395,427 (GRCm38)	Y337*	probably null	Het
Trav15-2-dv6-2	A	C	14: 53,887,308 (GRCm39)	Y76S	probably benign	Het
Vmn2r60	AG	A	7: 41,845,158 (GRCm39)		probably null	Het
Vps13d	T	C	4: 144,818,492 (GRCm39)	E3125G		Het
Xkr6	G	T	14: 64,056,610 (GRCm39)	V430F	probably benign	Het
Zfp142	T	C	1: 74,610,061 (GRCm39)	T1245A	probably benign	Het
Zfp960	C	T	17: 17,307,825 (GRCm39)	H180Y	possibly damaging	Het

Other mutations in Vmn1r172

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02295:Vmn1r172	APN	7	23,359,342 (GRCm39)	missense	probably benign	0.30
IGL02407:Vmn1r172	APN	7	23,359,228 (GRCm39)	missense	probably damaging	1.00
IGL02540:Vmn1r172	APN	7	23,359,350 (GRCm39)	missense	probably benign	0.25
IGL03090:Vmn1r172	APN	7	23,359,463 (GRCm39)	missense	probably damaging	0.98
R0396:Vmn1r172	UTSW	7	23,359,957 (GRCm39)	missense	probably benign	0.06
R1087:Vmn1r172	UTSW	7	23,359,673 (GRCm39)	missense	possibly damaging	0.92
R1502:Vmn1r172	UTSW	7	23,359,681 (GRCm39)	nonsense	probably null
R1701:Vmn1r172	UTSW	7	23,359,529 (GRCm39)	missense	probably damaging	1.00
R1882:Vmn1r172	UTSW	7	23,359,651 (GRCm39)	missense	probably damaging	1.00
R2272:Vmn1r172	UTSW	7	23,359,616 (GRCm39)	missense	probably damaging	0.98
R4646:Vmn1r172	UTSW	7	23,359,919 (GRCm39)	missense	probably benign	0.03
R4653:Vmn1r172	UTSW	7	23,359,997 (GRCm39)	missense	probably damaging	0.96
R4709:Vmn1r172	UTSW	7	23,359,606 (GRCm39)	missense	probably benign	0.25
R4937:Vmn1r172	UTSW	7	23,359,312 (GRCm39)	missense	possibly damaging	0.92
R4945:Vmn1r172	UTSW	7	23,359,745 (GRCm39)	missense	possibly damaging	0.79
R5840:Vmn1r172	UTSW	7	23,359,600 (GRCm39)	missense	probably benign	0.03
R6154:Vmn1r172	UTSW	7	23,359,583 (GRCm39)	missense	probably damaging	0.96
R6317:Vmn1r172	UTSW	7	23,359,742 (GRCm39)	missense	probably damaging	1.00
R7206:Vmn1r172	UTSW	7	23,359,582 (GRCm39)	missense	possibly damaging	0.69
R7290:Vmn1r172	UTSW	7	23,360,048 (GRCm39)	missense	unknown
R7362:Vmn1r172	UTSW	7	23,359,841 (GRCm39)	missense	probably damaging	1.00
R7369:Vmn1r172	UTSW	7	23,360,030 (GRCm39)	missense	unknown
R7946:Vmn1r172	UTSW	7	23,358,857 (GRCm39)	splice site	probably null
R8193:Vmn1r172	UTSW	7	23,359,752 (GRCm39)	nonsense	probably null
R8540:Vmn1r172	UTSW	7	23,359,498 (GRCm39)	missense	possibly damaging	0.79
R8863:Vmn1r172	UTSW	7	23,359,210 (GRCm39)	missense	probably benign	0.08
R8974:Vmn1r172	UTSW	7	23,359,840 (GRCm39)	missense	probably benign	0.06
R9006:Vmn1r172	UTSW	7	23,359,402 (GRCm39)	missense	probably benign	0.04
R9021:Vmn1r172	UTSW	7	23,359,749 (GRCm39)	missense	probably damaging	1.00
R9246:Vmn1r172	UTSW	7	23,359,593 (GRCm39)	missense	possibly damaging	0.77
R9604:Vmn1r172	UTSW	7	23,359,193 (GRCm39)	missense	possibly damaging	0.68
U24488:Vmn1r172	UTSW	7	23,359,171 (GRCm39)	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- AGTGGTGTCTTCTTACCCAGG -3'
(R):5'- AAGTACTCAAGCTTACAGTTGAGG -3'

Sequencing Primer
(F):5'- GGTGTCTTCTTACCCAGGAAAATAC -3'
(R):5'- ACAGTTGAGGTTATTCAGAGGATTCC -3'

Posted On

2019-10-17