Mutagenetix > Incidental Mutation

Incidental Mutation 'R8157:Trabd'

633095

Institutional Source

Beutler Lab

Gene Symbol

Trabd

Ensembl Gene

ENSMUSG00000015363

Gene Name

TraB domain containing

Synonyms

5730502D15Rik

MMRRC Submission

067583-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8157 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

88960267-88971278 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 88970024 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Histidine at position 340 (L340H)

Ref Sequence

ENSEMBL: ENSMUSP00000080403 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000081702] [ENSMUST00000082439] [ENSMUST00000130700] [ENSMUST00000165690] [ENSMUST00000168863] [ENSMUST00000169870] [ENSMUST00000169891]

AlphaFold

Q99JY4

Predicted Effect

probably damaging
Transcript: ENSMUST00000081702
AA Change: L340H

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000080403
Gene: ENSMUSG00000015363
AA Change: L340H

Domain	Start	End	E-Value	Type
low complexity region	44	56	N/A	INTRINSIC
Pfam:TraB	63	367	8e-49	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000082439

SMART Domains

Protein: ENSMUSP00000081020
Gene: ENSMUSG00000035757

Domain	Start	End	E-Value	Type
low complexity region	24	38	N/A	INTRINSIC
Pfam:UPF0061	79	625	8.3e-131	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000130700

SMART Domains

Protein: ENSMUSP00000138382
Gene: ENSMUSG00000035757

Domain	Start	End	E-Value	Type
low complexity region	24	38	N/A	INTRINSIC
Pfam:UPF0061	80	241	1.5e-39	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000165690
AA Change: L340H

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000131228
Gene: ENSMUSG00000015363
AA Change: L340H

Domain	Start	End	E-Value	Type
low complexity region	44	56	N/A	INTRINSIC
Pfam:TraB	63	310	9.9e-31	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000168863

SMART Domains

Protein: ENSMUSP00000130292
Gene: ENSMUSG00000015363

Domain	Start	End	E-Value	Type
low complexity region	44	56	N/A	INTRINSIC
Pfam:TraB	63	235	1e-33	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000169870

Predicted Effect

probably benign
Transcript: ENSMUST00000169891

SMART Domains

Protein: ENSMUSP00000128721
Gene: ENSMUSG00000015363

Domain	Start	End	E-Value	Type
low complexity region	44	56	N/A	INTRINSIC
Pfam:TraB	63	276	8.8e-44	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310011J03Rik	T	A	10: 80,155,361 (GRCm39)	R51W	probably damaging	Het
Adam3	A	G	8: 25,197,453 (GRCm39)	I326T	probably benign	Het
Alpk3	A	G	7: 80,743,470 (GRCm39)	K1096E	probably benign	Het
Aph1a	T	C	3: 95,802,150 (GRCm39)	V44A	possibly damaging	Het
Ash1l	T	A	3: 88,971,014 (GRCm39)		probably null	Het
Atg2b	A	G	12: 105,629,199 (GRCm39)	M410T	probably damaging	Het
Castor2	T	C	5: 134,165,936 (GRCm39)	F228S	possibly damaging	Het
Ccdc15	C	T	9: 37,226,753 (GRCm39)	G407D	probably benign	Het
Cd200r4	T	A	16: 44,653,504 (GRCm39)	N137K	probably damaging	Het
Clec18a	A	G	8: 111,798,683 (GRCm39)	L438P	probably damaging	Het
Clip1	A	G	5: 123,768,782 (GRCm39)	S606P	probably benign	Het
Col11a2	G	A	17: 34,280,230 (GRCm39)	G1193E	unknown	Het
Col6a4	A	G	9: 105,945,097 (GRCm39)	S1006P	possibly damaging	Het
Ctsc	A	T	7: 87,951,416 (GRCm39)	D221V	probably benign	Het
Ctse	T	C	1: 131,600,249 (GRCm39)	Y333H	probably damaging	Het
Cyp2c23	T	C	19: 44,010,066 (GRCm39)	N93S	probably benign	Het
Daam1	A	T	12: 71,999,263 (GRCm39)	D633V	probably damaging	Het
Dlg2	G	A	7: 92,036,140 (GRCm39)	R607H	probably damaging	Het
Dsg2	T	A	18: 20,713,606 (GRCm39)	D192E	probably damaging	Het
Dync2h1	A	T	9: 7,001,473 (GRCm39)	N3838K	possibly damaging	Het
Ephx2	A	C	14: 66,345,506 (GRCm39)	S153A	probably damaging	Het
Eprs1	C	A	1: 185,130,591 (GRCm39)	H651N	probably benign	Het
Fat2	T	C	11: 55,142,910 (GRCm39)	D4313G	possibly damaging	Het
Fras1	A	G	5: 96,702,714 (GRCm39)	K252R	probably benign	Het
Galt	A	T	4: 41,757,226 (GRCm39)	Q193L	probably benign	Het
Gm7356	T	C	17: 14,221,583 (GRCm39)	K149E	probably damaging	Het
Gmcl1	G	T	6: 86,698,408 (GRCm39)	A163E	probably damaging	Het
Hectd1	T	A	12: 51,838,073 (GRCm39)	R696S	possibly damaging	Het
Hydin	A	G	8: 111,178,668 (GRCm39)	I1088V	probably benign	Het
Igkv4-68	A	T	6: 69,282,306 (GRCm39)	S14R	probably benign	Het
Lamb2	C	T	9: 108,357,845 (GRCm39)	R123W	probably damaging	Het
Ldlrad4	C	T	18: 68,387,293 (GRCm39)	R202*	probably null	Het
Lrit3	T	C	3: 129,594,284 (GRCm39)	T98A	probably benign	Het
Macc1	A	G	12: 119,409,728 (GRCm39)	I165M	probably benign	Het
Mapre2	T	A	18: 23,991,218 (GRCm39)	M162K	probably benign	Het
Mzf1	T	A	7: 12,778,279 (GRCm39)	H454L	probably damaging	Het
Naa30	T	A	14: 49,410,865 (GRCm39)	N264K	probably benign	Het
Or5ac17	A	G	16: 59,036,352 (GRCm39)	V208A	probably benign	Het
Or8d2	T	A	9: 38,759,762 (GRCm39)	Y117*	probably null	Het
Osr2	T	C	15: 35,302,063 (GRCm39)	I221T	probably benign	Het
Pcdh12	A	T	18: 38,415,850 (GRCm39)	I425K	probably benign	Het
Pcdhb3	T	G	18: 37,436,292 (GRCm39)	Y753D	probably damaging	Het
Pcdhb9	T	A	18: 37,536,208 (GRCm39)	V734E	probably damaging	Het
Pibf1	T	A	14: 99,433,831 (GRCm39)	L593I	probably benign	Het
Prag1	G	A	8: 36,614,393 (GRCm39)	C1315Y	probably damaging	Het
Prl3c1	T	C	13: 27,383,330 (GRCm39)	S19P	probably damaging	Het
Ptprz1	A	T	6: 23,002,539 (GRCm39)	D1543V	probably damaging	Het
Ripor2	A	G	13: 24,879,600 (GRCm39)	N356S	probably benign	Het
Rmc1	T	C	18: 12,321,690 (GRCm39)	V497A	possibly damaging	Het
Saxo4	A	T	19: 10,455,629 (GRCm39)	F207I	probably damaging	Het
Scrib	T	C	15: 75,931,037 (GRCm39)	H914R	possibly damaging	Het
Sema6b	G	A	17: 56,435,448 (GRCm39)	A265V	probably damaging	Het
Tdrd9	C	G	12: 111,951,500 (GRCm39)	L97V	probably benign	Het
Tle7	A	G	8: 110,835,493 (GRCm39)	M24V	probably benign	Het
Trpm1	T	C	7: 63,849,017 (GRCm39)	W88R	probably damaging	Het
Txndc12	G	T	4: 108,710,419 (GRCm39)		probably null	Het
Vmn1r175	T	C	7: 23,508,523 (GRCm39)	I35V	probably benign	Het
Vmn1r48	A	T	6: 90,012,994 (GRCm39)	V277E	probably damaging	Het
Vmn2r72	G	A	7: 85,400,441 (GRCm39)	H203Y	probably benign	Het
Zbtb7c	A	G	18: 76,270,398 (GRCm39)	E162G	probably benign	Het
Zfp93	T	A	7: 23,975,885 (GRCm39)	C623*	probably null	Het
Zzz3	A	G	3: 152,155,285 (GRCm39)	I645V	probably null	Het

Other mutations in Trabd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01540:Trabd	APN	15	88,968,998 (GRCm39)	missense	probably benign	0.01
R0355:Trabd	UTSW	15	88,969,816 (GRCm39)	missense	possibly damaging	0.53
R0603:Trabd	UTSW	15	88,966,929 (GRCm39)	missense	probably damaging	1.00
R1658:Trabd	UTSW	15	88,970,069 (GRCm39)	splice site	probably null
R1806:Trabd	UTSW	15	88,969,824 (GRCm39)	missense	possibly damaging	0.96
R1883:Trabd	UTSW	15	88,966,184 (GRCm39)	missense	probably damaging	0.98
R2015:Trabd	UTSW	15	88,968,929 (GRCm39)	missense	possibly damaging	0.55
R4507:Trabd	UTSW	15	88,969,833 (GRCm39)	missense	probably damaging	0.97
R4653:Trabd	UTSW	15	88,970,042 (GRCm39)	missense	probably damaging	1.00
R4842:Trabd	UTSW	15	88,966,915 (GRCm39)	missense	probably benign	0.33
R5364:Trabd	UTSW	15	88,967,007 (GRCm39)	splice site	probably benign
R5561:Trabd	UTSW	15	88,966,187 (GRCm39)	missense	probably benign	0.28
R7378:Trabd	UTSW	15	88,969,493 (GRCm39)	missense	possibly damaging	0.56
R7843:Trabd	UTSW	15	88,966,157 (GRCm39)	missense	possibly damaging	0.94
R8331:Trabd	UTSW	15	88,969,131 (GRCm39)	missense	probably damaging	0.99
R8353:Trabd	UTSW	15	88,969,616 (GRCm39)	missense	possibly damaging	0.69
R8443:Trabd	UTSW	15	88,970,107 (GRCm39)	missense	probably benign	0.41
R8453:Trabd	UTSW	15	88,969,616 (GRCm39)	missense	possibly damaging	0.69
R8739:Trabd	UTSW	15	88,969,152 (GRCm39)	missense	probably damaging	1.00
R8850:Trabd	UTSW	15	88,969,667 (GRCm39)	splice site	probably benign
R9021:Trabd	UTSW	15	88,968,913 (GRCm39)	missense	possibly damaging	0.46
R9425:Trabd	UTSW	15	88,969,496 (GRCm39)	missense	probably damaging	1.00
Z1177:Trabd	UTSW	15	88,969,139 (GRCm39)	missense	probably damaging	1.00
Z1177:Trabd	UTSW	15	88,960,798 (GRCm39)	intron	probably benign

Predicted Primers

PCR Primer
(F):5'- CATCCAGGAGATCATGACGTGAG -3'
(R):5'- TTGGATGCATCTGTCCCCAG -3'

Sequencing Primer
(F):5'- GTGAGTGCCTCCCCACATCAC -3'
(R):5'- CTCCTCGTGAGCACCCCAC -3'

Posted On

2020-06-30