Incidental Mutation 'R8390:Wdr19'
| ID |
647319 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Wdr19
|
| Ensembl Gene |
ENSMUSG00000037890 |
| Gene Name |
WD repeat domain 19 |
| Synonyms |
D330023L08Rik, DYF2, C330027H04Rik, Ift144 |
| MMRRC Submission |
067755-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R8390 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
5 |
| Chromosomal Location |
65357039-65417758 bp(+) (GRCm39) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
T to A
at 65381210 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Stop codon
at position 411
(Y411*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000038098
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000041892]
[ENSMUST00000203653]
|
| AlphaFold |
Q3UGF1 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000041892
AA Change: Y411*
|
| SMART Domains |
Protein: ENSMUSP00000038098
Gene: ENSMUSG00000037890
AA Change: Y411*
| Domain | Start | End | E-Value | Type |
|---|
|
WD40
|
6 |
42 |
4.26e1 |
SMART |
|
WD40
|
44 |
83 |
2.13e1 |
SMART |
|
WD40
|
85 |
125 |
2.75e1 |
SMART |
|
WD40
|
128 |
166 |
2.67e-1 |
SMART |
|
Blast:WD40
|
220 |
258 |
6e-9 |
BLAST |
|
WD40
|
264 |
302 |
1.46e-1 |
SMART |
|
Blast:WD40
|
308 |
347 |
2e-18 |
BLAST |
|
Pfam:WD40_3
|
508 |
564 |
2.7e-32 |
PFAM |
|
low complexity region
|
1103 |
1116 |
N/A |
INTRINSIC |
|
low complexity region
|
1259 |
1268 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000203653
AA Change: Y411*
|
| SMART Domains |
Protein: ENSMUSP00000144866
Gene: ENSMUSG00000037890
AA Change: Y411*
| Domain | Start | End | E-Value | Type |
|---|
|
WD40
|
6 |
42 |
4.26e1 |
SMART |
|
WD40
|
44 |
83 |
2.13e1 |
SMART |
|
WD40
|
85 |
125 |
2.75e1 |
SMART |
|
WD40
|
128 |
166 |
2.67e-1 |
SMART |
|
Blast:WD40
|
220 |
258 |
6e-9 |
BLAST |
|
WD40
|
264 |
302 |
1.46e-1 |
SMART |
|
Blast:WD40
|
308 |
347 |
2e-18 |
BLAST |
|
Pfam:WD40_3
|
508 |
564 |
2.7e-32 |
PFAM |
|
low complexity region
|
1103 |
1116 |
N/A |
INTRINSIC |
|
low complexity region
|
1259 |
1268 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.8%
- 20x: 99.5%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the WD (tryptophan-aspartic acid) repeat family, which is a large family of structurally-related proteins known to participate in a wide range of cellular processes. Each WD repeat typically contains about 40 amino acids that are usually bracketed by glycine-histidine and tryptophan-aspartic acid (WD) dipeptides. This protein contains six WD repeats, three transmembrane domains, and a clathrin heavy-chain repeat. Mutations in this gene have been described in individuals with a wide range of disorders affecting function of the cilium. These disorders are known as ciliopathies, and include Jeune syndrome, Sensenbrenner syndromes, Senior-Loken syndrome, combined or isolated nephronophthisis (NPHP), and retinitis pigmentosa (RP). Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2015]
PHENOTYPE: Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E10. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700069L16Rik |
A |
T |
5: 113,830,841 (GRCm39) |
F50I |
unknown |
Het |
| Abca9 |
A |
T |
11: 110,036,456 (GRCm39) |
M551K |
probably benign |
Het |
| Adgrl3 |
T |
C |
5: 81,914,057 (GRCm39) |
S1145P |
probably damaging |
Het |
| Brix1 |
C |
T |
15: 10,485,954 (GRCm39) |
R9H |
probably benign |
Het |
| C1d |
T |
C |
11: 17,213,993 (GRCm39) |
V83A |
probably damaging |
Het |
| Ciz1 |
G |
T |
2: 32,257,335 (GRCm39) |
V127L |
probably benign |
Het |
| Csnk1g3 |
A |
T |
18: 54,081,150 (GRCm39) |
T374S |
probably benign |
Het |
| Elavl1 |
T |
A |
8: 4,339,623 (GRCm39) |
K320* |
probably null |
Het |
| Foxn3 |
T |
A |
12: 99,355,000 (GRCm39) |
M55L |
probably benign |
Het |
| Gm14399 |
A |
T |
2: 174,972,605 (GRCm39) |
Y383* |
probably null |
Het |
| H2-M10.5 |
T |
A |
17: 37,085,487 (GRCm39) |
H215Q |
probably benign |
Het |
| Hsd17b13 |
C |
A |
5: 104,120,512 (GRCm39) |
C80F |
probably damaging |
Het |
| Ifi206 |
G |
T |
1: 173,308,511 (GRCm39) |
T495N |
|
Het |
| Ifi207 |
GTT |
GT |
1: 173,557,016 (GRCm39) |
|
probably null |
Het |
| Ipo13 |
A |
T |
4: 117,769,534 (GRCm39) |
I86N |
probably damaging |
Het |
| Iqcf3 |
T |
G |
9: 106,438,175 (GRCm39) |
E16A |
unknown |
Het |
| Kcnh5 |
T |
A |
12: 75,134,532 (GRCm39) |
D339V |
probably damaging |
Het |
| Lmbr1 |
C |
T |
5: 29,440,040 (GRCm39) |
M441I |
probably benign |
Het |
| Me3 |
G |
T |
7: 89,498,803 (GRCm39) |
G461V |
probably damaging |
Het |
| Mepce |
A |
G |
5: 137,783,441 (GRCm39) |
L295P |
possibly damaging |
Het |
| Mtpap |
T |
A |
18: 4,396,141 (GRCm39) |
Y478N |
probably damaging |
Het |
| Myl12a |
T |
C |
17: 71,303,231 (GRCm39) |
M74V |
probably benign |
Het |
| Neil3 |
A |
T |
8: 54,062,559 (GRCm39) |
M99K |
probably damaging |
Het |
| Nlrp3 |
A |
G |
11: 59,442,616 (GRCm39) |
T723A |
possibly damaging |
Het |
| Obscn |
A |
T |
11: 58,892,870 (GRCm39) |
I6792N |
probably benign |
Het |
| Or13a19 |
G |
T |
7: 139,903,027 (GRCm39) |
W138C |
possibly damaging |
Het |
| Or2d2 |
A |
G |
7: 106,728,522 (GRCm39) |
L26P |
probably benign |
Het |
| Or5al7 |
A |
G |
2: 85,993,266 (GRCm39) |
V9A |
possibly damaging |
Het |
| Or8b49 |
T |
A |
9: 38,505,887 (GRCm39) |
Y123* |
probably null |
Het |
| Or8h10 |
G |
A |
2: 86,808,501 (GRCm39) |
T213I |
probably benign |
Het |
| Peg10 |
T |
TCCC |
6: 4,756,451 (GRCm39) |
|
probably benign |
Het |
| Pitx2 |
C |
A |
3: 129,012,507 (GRCm39) |
N312K |
probably damaging |
Het |
| Pot1b |
C |
A |
17: 55,999,739 (GRCm39) |
V229L |
probably benign |
Het |
| Psmd1 |
A |
G |
1: 86,006,329 (GRCm39) |
I232V |
possibly damaging |
Het |
| Rif1 |
A |
G |
2: 52,000,935 (GRCm39) |
E1463G |
probably damaging |
Het |
| Scn5a |
T |
A |
9: 119,368,604 (GRCm39) |
Y307F |
possibly damaging |
Het |
| Shprh |
G |
A |
10: 11,063,727 (GRCm39) |
E1267K |
possibly damaging |
Het |
| Smtnl1 |
A |
T |
2: 84,645,694 (GRCm39) |
Y392* |
probably null |
Het |
| Sry |
GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG |
GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG |
Y: 2,662,638 (GRCm39) |
|
probably benign |
Het |
| Sspo |
G |
A |
6: 48,444,896 (GRCm39) |
G2268R |
probably benign |
Het |
| Tex47 |
G |
A |
5: 7,355,301 (GRCm39) |
E161K |
probably benign |
Het |
| Timd6 |
G |
T |
11: 46,468,082 (GRCm39) |
R52L |
probably damaging |
Het |
| Tmem236 |
T |
C |
2: 14,224,168 (GRCm39) |
L319P |
probably damaging |
Het |
| Tnk1 |
T |
C |
11: 69,742,695 (GRCm39) |
T606A |
possibly damaging |
Het |
| Tnrc6a |
A |
G |
7: 122,761,794 (GRCm39) |
T81A |
probably damaging |
Het |
| Trav6d-4 |
A |
T |
14: 52,991,092 (GRCm39) |
T46S |
probably benign |
Het |
| Zfp553 |
A |
G |
7: 126,835,476 (GRCm39) |
T344A |
probably damaging |
Het |
| Zfp62 |
G |
A |
11: 49,106,019 (GRCm39) |
G37S |
probably benign |
Het |
|
| Other mutations in Wdr19 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00985:Wdr19
|
APN |
5 |
65,409,642 (GRCm39) |
missense |
probably benign |
0.41 |
|
IGL01346:Wdr19
|
APN |
5 |
65,379,082 (GRCm39) |
splice site |
probably benign |
|
|
IGL01761:Wdr19
|
APN |
5 |
65,373,163 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
IGL01845:Wdr19
|
APN |
5 |
65,382,709 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL01977:Wdr19
|
APN |
5 |
65,385,912 (GRCm39) |
missense |
probably benign |
|
|
IGL02314:Wdr19
|
APN |
5 |
65,414,463 (GRCm39) |
missense |
probably benign |
0.26 |
|
IGL02455:Wdr19
|
APN |
5 |
65,382,102 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02542:Wdr19
|
APN |
5 |
65,388,414 (GRCm39) |
missense |
probably benign |
|
|
IGL02616:Wdr19
|
APN |
5 |
65,380,924 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL02661:Wdr19
|
APN |
5 |
65,403,151 (GRCm39) |
missense |
probably benign |
0.06 |
|
IGL02927:Wdr19
|
APN |
5 |
65,409,721 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
IGL02958:Wdr19
|
APN |
5 |
65,370,150 (GRCm39) |
splice site |
probably null |
|
|
IGL03083:Wdr19
|
APN |
5 |
65,388,319 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL03332:Wdr19
|
APN |
5 |
65,384,486 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
detritus
|
UTSW |
5 |
65,370,234 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R4609_Wdr19_503
|
UTSW |
5 |
65,385,885 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R7190_Wdr19_539
|
UTSW |
5 |
65,398,205 (GRCm39) |
missense |
probably benign |
0.35 |
|
refuse
|
UTSW |
5 |
65,385,635 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R0924:Wdr19
|
UTSW |
5 |
65,413,782 (GRCm39) |
splice site |
probably benign |
|
|
R1178:Wdr19
|
UTSW |
5 |
65,381,208 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1229:Wdr19
|
UTSW |
5 |
65,413,734 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R1434:Wdr19
|
UTSW |
5 |
65,380,847 (GRCm39) |
splice site |
probably benign |
|
|
R1543:Wdr19
|
UTSW |
5 |
65,382,033 (GRCm39) |
missense |
probably benign |
0.06 |
|
R1819:Wdr19
|
UTSW |
5 |
65,370,234 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R1971:Wdr19
|
UTSW |
5 |
65,398,503 (GRCm39) |
splice site |
probably benign |
|
|
R2190:Wdr19
|
UTSW |
5 |
65,401,509 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R2274:Wdr19
|
UTSW |
5 |
65,398,334 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R3106:Wdr19
|
UTSW |
5 |
65,359,966 (GRCm39) |
missense |
probably benign |
0.20 |
|
R3753:Wdr19
|
UTSW |
5 |
65,382,069 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3893:Wdr19
|
UTSW |
5 |
65,385,635 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R4609:Wdr19
|
UTSW |
5 |
65,385,885 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R5284:Wdr19
|
UTSW |
5 |
65,382,752 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5328:Wdr19
|
UTSW |
5 |
65,401,522 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5530:Wdr19
|
UTSW |
5 |
65,385,562 (GRCm39) |
missense |
probably benign |
|
|
R5837:Wdr19
|
UTSW |
5 |
65,360,300 (GRCm39) |
missense |
probably benign |
0.08 |
|
R5902:Wdr19
|
UTSW |
5 |
65,384,482 (GRCm39) |
missense |
probably benign |
0.09 |
|
R6065:Wdr19
|
UTSW |
5 |
65,379,056 (GRCm39) |
missense |
probably benign |
|
|
R6419:Wdr19
|
UTSW |
5 |
65,373,236 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R6495:Wdr19
|
UTSW |
5 |
65,415,466 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6916:Wdr19
|
UTSW |
5 |
65,382,677 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R7020:Wdr19
|
UTSW |
5 |
65,413,657 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7190:Wdr19
|
UTSW |
5 |
65,398,205 (GRCm39) |
missense |
probably benign |
0.35 |
|
R7972:Wdr19
|
UTSW |
5 |
65,381,193 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8328:Wdr19
|
UTSW |
5 |
65,382,638 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R8960:Wdr19
|
UTSW |
5 |
65,398,211 (GRCm39) |
missense |
probably benign |
|
|
R9260:Wdr19
|
UTSW |
5 |
65,363,789 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
X0028:Wdr19
|
UTSW |
5 |
65,401,487 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- GGCCAACCTCATTGAAGGAG -3'
(R):5'- ACCACACTCTGTCTAGAAGTCATG -3'
Sequencing Primer
(F):5'- CCAACCTCATTGAAGGAGTAAGTG -3'
(R):5'- ACACTCTGTCTAGAAGTCATGTAAAG -3'
|
| Posted On |
2020-09-02 |
Incidental Mutation