Mutagenetix > Incidental Mutation

Incidental Mutation 'R8781:Vmn1r58'

670245

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r58

Ensembl Gene

ENSMUSG00000078808

Gene Name

vomeronasal 1 receptor 58

Synonyms

V3R4, V1rd4

MMRRC Submission

068605-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.052) question?

Stock #

R8781 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

5411886-5416144 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 5413482 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Phenylalanine at position 249 (L249F)

Ref Sequence

ENSEMBL: ENSMUSP00000104209 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000108569] [ENSMUST00000228728]

AlphaFold

G3X9U3

Predicted Effect

probably benign
Transcript: ENSMUST00000108569
AA Change: L249F

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000104209
Gene: ENSMUSG00000078808
AA Change: L249F

Domain	Start	End	E-Value	Type
Pfam:TAS2R	1	296	7.8e-13	PFAM
Pfam:7tm_1	20	279	4.4e-7	PFAM
Pfam:V1R	31	296	7.7e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000228728
AA Change: L249F

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (59/59)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1810055G02Rik	A	G	19: 3,767,538 (GRCm39)	D375G	possibly damaging	Het
Abi3bp	C	T	16: 56,426,512 (GRCm39)	T509I	probably damaging	Het
Atp13a2	T	A	4: 140,723,691 (GRCm39)	C257S	probably benign	Het
Ccdc183	T	A	2: 25,502,208 (GRCm39)		probably benign	Het
Cd109	C	T	9: 78,543,929 (GRCm39)	P158S	probably damaging	Het
Cdh23	C	T	10: 60,167,567 (GRCm39)	E1810K	probably damaging	Het
Cog5	T	A	12: 31,883,249 (GRCm39)	W393R	probably damaging	Het
Cyth1	C	T	11: 118,073,069 (GRCm39)	R277Q	probably damaging	Het
Ddx54	G	T	5: 120,751,217 (GRCm39)	R6L	probably benign	Het
Dnah8	T	A	17: 30,944,078 (GRCm39)	I1765N	probably damaging	Het
Erp27	G	A	6: 136,886,458 (GRCm39)	Q192*	probably null	Het
Fam81a	T	A	9: 70,032,381 (GRCm39)	H37L	probably damaging	Het
Fbn2	A	G	18: 58,194,719 (GRCm39)	S1481P	possibly damaging	Het
Fbp1	T	G	13: 63,016,831 (GRCm39)	I224L	probably benign	Het
Fhit	A	G	14: 10,421,503 (GRCm38)	V32A	probably damaging	Het
Gapvd1	T	A	2: 34,610,698 (GRCm39)	H495L	probably benign	Het
Gas2l3	T	C	10: 89,266,841 (GRCm39)	D33G	probably damaging	Het
Heatr5b	A	T	17: 79,102,738 (GRCm39)	D1213E	probably benign	Het
Hsf2bp	C	G	17: 32,252,241 (GRCm39)	E65Q	possibly damaging	Het
Kif28	G	T	1: 179,525,481 (GRCm39)	T937K	probably benign	Het
Klf6	T	A	13: 5,915,071 (GRCm39)	V170D	probably benign	Het
Kri1	A	T	9: 21,191,748 (GRCm39)	S283T		Het
Lcor	C	T	19: 41,573,698 (GRCm39)	R818W	probably damaging	Het
Lct	A	G	1: 128,215,261 (GRCm39)	Y1772H	probably damaging	Het
Lrrc37	T	A	11: 103,508,958 (GRCm39)	E1003D	unknown	Het
Naip5	T	A	13: 100,356,338 (GRCm39)	E1092D	probably benign	Het
Or2b2b	A	G	13: 21,859,013 (GRCm39)	S34P	probably damaging	Het
Or52j3	T	A	7: 102,836,082 (GRCm39)	D91E	probably benign	Het
Or8c14-ps1	T	G	9: 38,101,385 (GRCm39)	D121E	probably damaging	Het
Parg	T	A	14: 31,936,400 (GRCm39)	D518E	probably benign	Het
Pcx	G	A	19: 4,670,980 (GRCm39)	A1095T	probably damaging	Het
Pde1b	G	A	15: 103,433,727 (GRCm39)	V342M	probably damaging	Het
Pik3r2	C	T	8: 71,222,046 (GRCm39)	G579D	possibly damaging	Het
Pknox1	G	A	17: 31,821,837 (GRCm39)		probably benign	Het
Pla2g3	C	A	11: 3,438,530 (GRCm39)	T60K	probably benign	Het
Ppfia3	C	T	7: 44,997,953 (GRCm39)	E725K	possibly damaging	Het
Ppl	C	T	16: 4,915,800 (GRCm39)	V588I	possibly damaging	Het
Sardh	T	A	2: 27,086,715 (GRCm39)	E815V	possibly damaging	Het
Scn7a	T	C	2: 66,567,775 (GRCm39)	E273G	probably benign	Het
Slc7a8	A	T	14: 54,996,996 (GRCm39)		probably benign	Het
Smg8	G	A	11: 86,971,147 (GRCm39)	P875S	possibly damaging	Het
Sncaip	T	C	18: 53,039,614 (GRCm39)	S603P	probably benign	Het
Speg	G	A	1: 75,383,665 (GRCm39)	G1218S	probably damaging	Het
Stk31	A	T	6: 49,383,709 (GRCm39)	D92V	probably damaging	Het
Suco	A	G	1: 161,645,951 (GRCm39)	V1250A	probably damaging	Het
Tas2r138	A	G	6: 40,589,850 (GRCm39)	V132A	probably benign	Het
Tcp1	T	C	17: 13,143,263 (GRCm39)	I524T	probably damaging	Het
Tenm3	CTGCTGTGAAATG	C	8: 48,795,484 (GRCm39)		probably null	Het
Tln2	C	A	9: 67,163,233 (GRCm39)	V1105L	probably damaging	Het
Tmem19	T	C	10: 115,195,563 (GRCm39)		probably benign	Het
Tmprss4	T	C	9: 45,087,740 (GRCm39)	Y283C	possibly damaging	Het
Trim29	T	A	9: 43,222,615 (GRCm39)	V148D	probably benign	Het
Trip10	C	T	17: 57,562,313 (GRCm39)	A277V	probably benign	Het
Usp12	C	A	5: 146,700,172 (GRCm39)	R61L	probably benign	Het
Vmn2r31	C	T	7: 7,387,400 (GRCm39)	V724I	possibly damaging	Het
Vmn2r66	C	T	7: 84,644,355 (GRCm39)	W685*	probably null	Het
Vmn2r8	A	G	5: 108,945,597 (GRCm39)	I670T	possibly damaging	Het
Vmn2r91	T	A	17: 18,305,323 (GRCm39)	M2K	possibly damaging	Het
Wdr12	A	G	1: 60,126,300 (GRCm39)	W172R	probably damaging	Het
Yipf5	A	T	18: 40,340,752 (GRCm39)	V200E	possibly damaging	Het
Zfp608	T	C	18: 55,031,801 (GRCm39)	K713R	probably damaging	Het
Zfp768	A	G	7: 126,942,476 (GRCm39)	S554P	probably damaging	Het

Other mutations in Vmn1r58

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01287:Vmn1r58	APN	7	5,414,054 (GRCm39)	missense	probably benign	0.19
IGL02792:Vmn1r58	APN	7	5,414,228 (GRCm39)	start codon destroyed	probably null	0.04
IGL03215:Vmn1r58	APN	7	5,413,835 (GRCm39)	missense	probably benign	0.00
IGL03259:Vmn1r58	APN	7	5,414,086 (GRCm39)	nonsense	probably null
K7894:Vmn1r58	UTSW	7	5,413,702 (GRCm39)	missense	probably benign	0.01
R0033:Vmn1r58	UTSW	7	5,413,387 (GRCm39)	missense	probably damaging	1.00
R0225:Vmn1r58	UTSW	7	5,413,865 (GRCm39)	missense	probably benign	0.02
R0304:Vmn1r58	UTSW	7	5,413,495 (GRCm39)	missense	probably damaging	1.00
R0360:Vmn1r58	UTSW	7	5,413,329 (GRCm39)	missense	probably benign	0.25
R0363:Vmn1r58	UTSW	7	5,413,636 (GRCm39)	missense	probably damaging	1.00
R0454:Vmn1r58	UTSW	7	5,413,997 (GRCm39)	missense	possibly damaging	0.69
R0565:Vmn1r58	UTSW	7	5,414,165 (GRCm39)	missense	probably benign	0.06
R0612:Vmn1r58	UTSW	7	5,413,618 (GRCm39)	missense	probably damaging	1.00
R0646:Vmn1r58	UTSW	7	5,413,676 (GRCm39)	missense	probably benign	0.00
R0853:Vmn1r58	UTSW	7	5,413,324 (GRCm39)	missense	probably damaging	1.00
R0920:Vmn1r58	UTSW	7	5,413,788 (GRCm39)	missense	probably benign	0.00
R1696:Vmn1r58	UTSW	7	5,413,727 (GRCm39)	missense	possibly damaging	0.67
R1823:Vmn1r58	UTSW	7	5,413,405 (GRCm39)	missense	possibly damaging	0.95
R2326:Vmn1r58	UTSW	7	5,413,939 (GRCm39)	missense	probably damaging	1.00
R4088:Vmn1r58	UTSW	7	5,413,654 (GRCm39)	missense	probably damaging	1.00
R5065:Vmn1r58	UTSW	7	5,413,834 (GRCm39)	missense	probably benign	0.00
R5087:Vmn1r58	UTSW	7	5,413,666 (GRCm39)	missense	probably benign	0.04
R5407:Vmn1r58	UTSW	7	5,413,872 (GRCm39)	missense	probably benign	0.01
R6855:Vmn1r58	UTSW	7	5,413,451 (GRCm39)	missense	possibly damaging	0.56
R7052:Vmn1r58	UTSW	7	5,414,134 (GRCm39)	missense	probably benign	0.04
R7334:Vmn1r58	UTSW	7	5,414,066 (GRCm39)	missense	probably benign	0.04
R7763:Vmn1r58	UTSW	7	5,413,912 (GRCm39)	missense	probably damaging	1.00
R7840:Vmn1r58	UTSW	7	5,414,242 (GRCm39)	start gained	probably benign
R7875:Vmn1r58	UTSW	7	5,413,753 (GRCm39)	missense	probably damaging	0.98
R8004:Vmn1r58	UTSW	7	5,413,506 (GRCm39)	nonsense	probably null
R8115:Vmn1r58	UTSW	7	5,413,341 (GRCm39)	missense	probably benign	0.00
R8802:Vmn1r58	UTSW	7	5,414,080 (GRCm39)	missense	probably damaging	1.00
X0058:Vmn1r58	UTSW	7	5,413,394 (GRCm39)	missense	possibly damaging	0.89
Z1176:Vmn1r58	UTSW	7	5,413,903 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AGTCCTTCCGGTGATATCAGG -3'
(R):5'- AGTGTCTCCATGGTGATTCAC -3'

Sequencing Primer
(F):5'- CCTTCCGGTGATATCAGGATGAG -3'
(R):5'- GTGATTCACCTACACAGACACC -3'

Posted On

2021-04-30