Mutagenetix > Incidental Mutation

Incidental Mutation 'R9087:L1td1'

690663

Institutional Source

Beutler Lab

Gene Symbol

L1td1

Ensembl Gene

ENSMUSG00000087166

Gene Name

LINE-1 type transposase domain containing 1

Synonyms

ECAT11

MMRRC Submission

068906-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.086) question?

Stock #

R9087 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

98614991-98626723 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 98624699 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 298 (D298G)

Ref Sequence

ENSEMBL: ENSMUSP00000127504 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000152889] [ENSMUST00000154279] [ENSMUST00000171708] [ENSMUST00000173659]

AlphaFold

Q587J6

Predicted Effect

probably benign
Transcript: ENSMUST00000152889

Predicted Effect

possibly damaging
Transcript: ENSMUST00000154279
AA Change: D298G

PolyPhen 2 Score 0.845 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000127504
Gene: ENSMUSG00000087166
AA Change: D298G

Domain	Start	End	E-Value	Type
Pfam:Transposase_22	175	295	4e-21	PFAM
low complexity region	346	397	N/A	INTRINSIC
low complexity region	402	413	N/A	INTRINSIC
Pfam:Transposase_22	495	782	2.2e-59	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000171708

Predicted Effect

unknown
Transcript: ENSMUST00000173659
AA Change: D298G

SMART Domains

Protein: ENSMUSP00000134149
Gene: ENSMUSG00000087166
AA Change: D298G

Domain	Start	End	E-Value	Type
Pfam:Transposase_22	175	291	6e-20	PFAM
coiled coil region	383	431	N/A	INTRINSIC
low complexity region	468	479	N/A	INTRINSIC
Pfam:Transposase_22	568	848	4.3e-57	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal development and fertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aars1	A	G	8: 111,768,169 (GRCm39)	D180G	probably damaging	Het
Abcb6	A	T	1: 75,150,211 (GRCm39)	I649K	probably damaging	Het
Ace	T	C	11: 105,872,745 (GRCm39)	F969S	probably damaging	Het
Ankrd26	A	G	6: 118,536,230 (GRCm39)		probably null	Het
Apobec1	A	T	6: 122,558,700 (GRCm39)	L9*	probably null	Het
Atp13a1	A	G	8: 70,256,457 (GRCm39)	D865G	probably damaging	Het
Barhl1	T	C	2: 28,805,231 (GRCm39)	Y154C	probably damaging	Het
Bbx	T	C	16: 50,094,998 (GRCm39)	D106G	probably damaging	Het
Cacna1a	G	A	8: 85,365,432 (GRCm39)	A2192T	probably benign	Het
Cacnb1	T	C	11: 97,893,833 (GRCm39)	N563S	possibly damaging	Het
Capn5	A	T	7: 97,775,531 (GRCm39)	I470N	probably damaging	Het
Cd300c	T	C	11: 114,850,591 (GRCm39)	T71A	probably damaging	Het
Celf4	T	A	18: 25,637,327 (GRCm39)	S223C	probably damaging	Het
Cftr	A	C	6: 18,214,180 (GRCm39)	I119L	possibly damaging	Het
Cmya5	T	C	13: 93,233,711 (GRCm39)	E459G	possibly damaging	Het
Cntn2	A	G	1: 132,453,108 (GRCm39)	Y395H	probably damaging	Het
Cntnap3	T	C	13: 64,899,532 (GRCm39)	D987G	probably damaging	Het
Col5a2	T	A	1: 45,481,818 (GRCm39)	D102V	unknown	Het
Cpeb2	T	C	5: 43,438,461 (GRCm39)	F812L		Het
Cpsf3	T	A	12: 21,358,995 (GRCm39)	L565Q	probably damaging	Het
Ctnnd1	A	C	2: 84,439,922 (GRCm39)	L796R	probably damaging	Het
Dach1	A	G	14: 98,406,267 (GRCm39)	L160P	probably benign	Het
Dennd1a	A	C	2: 37,911,366 (GRCm39)		probably null	Het
Dnah12	T	C	14: 26,546,503 (GRCm39)	I2431T	probably damaging	Het
Ep400	A	T	5: 110,815,430 (GRCm39)	Y2887*	probably null	Het
Erich1	T	C	8: 14,083,623 (GRCm39)	D149G	probably damaging	Het
Fut2	T	C	7: 45,300,493 (GRCm39)	N93S	probably damaging	Het
Gba2	C	T	4: 43,568,304 (GRCm39)	A688T	probably benign	Het
Gcm2	C	G	13: 41,263,406 (GRCm39)	E9Q		Het
Gfod1	T	C	13: 43,353,838 (GRCm39)	E379G	probably damaging	Het
Gfod2	A	G	8: 106,454,851 (GRCm39)	F10L	probably damaging	Het
Gm4871	T	G	5: 144,969,088 (GRCm39)	H75P	possibly damaging	Het
Gtpbp3	T	A	8: 71,944,999 (GRCm39)	V418E	probably benign	Het
Hif1a	T	A	12: 73,989,099 (GRCm39)	I688K	probably benign	Het
Ifi44	G	T	3: 151,451,517 (GRCm39)	S196R	probably damaging	Het
Igfn1	T	C	1: 135,902,606 (GRCm39)		probably null	Het
Itpr3	G	A	17: 27,337,651 (GRCm39)		probably benign	Het
Kl	A	G	5: 150,911,957 (GRCm39)	K569E	probably benign	Het
Klkb1	G	A	8: 45,728,515 (GRCm39)	Q415*	probably null	Het
L2hgdh	C	T	12: 69,749,131 (GRCm39)	R252Q	probably benign	Het
Lipc	C	G	9: 70,709,390 (GRCm39)	K452N	probably benign	Het
Lrp10	C	A	14: 54,705,621 (GRCm39)	S270R	probably damaging	Het
Ly6e	T	G	15: 74,829,649 (GRCm39)	L14R	probably benign	Het
Mast3	T	C	8: 71,242,330 (GRCm39)	D90G	possibly damaging	Het
Mmp27	T	C	9: 7,579,858 (GRCm39)	F444S	probably damaging	Het
Mrgpra2b	A	T	7: 47,114,518 (GRCm39)	N71K	probably benign	Het
Nbea	C	A	3: 55,550,157 (GRCm39)		probably null	Het
Ndufb10	A	G	17: 24,943,159 (GRCm39)		probably null	Het
Ndufb9	C	T	15: 58,811,151 (GRCm39)	P146S	probably benign	Het
Nhsl1	T	C	10: 18,407,030 (GRCm39)	V1388A	probably damaging	Het
Nomo1	C	A	7: 45,732,748 (GRCm39)	D1170E	probably benign	Het
Nop2	G	T	6: 125,114,391 (GRCm39)	R254L	probably benign	Het
Nup160	A	T	2: 90,514,429 (GRCm39)	T126S	probably benign	Het
Opa1	A	G	16: 29,437,053 (GRCm39)	D654G	probably damaging	Het
Or1j15	T	C	2: 36,459,345 (GRCm39)	L245P	probably damaging	Het
Or2j6	A	T	7: 139,980,547 (GRCm39)	C137*	probably null	Het
Or51h1	A	G	7: 102,308,964 (GRCm39)	K312R	probably benign	Het
Or52e8b	C	T	7: 104,673,910 (GRCm39)	W92*	probably null	Het
Or5aq1b	A	G	2: 86,902,299 (GRCm39)	Y60H	probably damaging	Het
Or5p68	A	G	7: 107,945,958 (GRCm39)	S77P	probably damaging	Het
Or8b52	A	G	9: 38,576,711 (GRCm39)	L143P	probably damaging	Het
Or8k18	A	G	2: 86,085,380 (GRCm39)	M219T	probably benign	Het
Osbp2	T	A	11: 3,667,976 (GRCm39)	D7V	probably damaging	Het
Osr2	A	T	15: 35,301,010 (GRCm39)	I189F	probably damaging	Het
Pdlim5	A	G	3: 142,058,594 (GRCm39)	V50A	possibly damaging	Het
Pik3r3	A	G	4: 116,148,931 (GRCm39)	N334S	probably benign	Het
Plk5	C	G	10: 80,193,830 (GRCm39)	R40G	probably damaging	Het
Ppfia4	A	G	1: 134,240,326 (GRCm39)	I889T	probably damaging	Het
Prpf38b	T	C	3: 108,811,657 (GRCm39)	K403E	unknown	Het
Rgs20	T	G	1: 4,994,190 (GRCm39)	E31A	possibly damaging	Het
Rpl11	A	T	4: 135,780,000 (GRCm39)	M12K	possibly damaging	Het
Rreb1	C	A	13: 38,115,644 (GRCm39)	T1001K	probably benign	Het
Ruvbl1	A	G	6: 88,474,355 (GRCm39)	K453E	probably benign	Het
Sdc4	A	T	2: 164,270,959 (GRCm39)	V100D	probably benign	Het
Simc1	C	A	13: 54,672,147 (GRCm39)	T165K	probably benign	Het
Slc2a3	A	G	6: 122,717,408 (GRCm39)	V16A	probably benign	Het
Smbd1	A	T	16: 32,627,130 (GRCm39)	S53T	possibly damaging	Het
Smndc1	A	T	19: 53,372,074 (GRCm39)	N113K	possibly damaging	Het
Tas2r139	T	G	6: 42,118,168 (GRCm39)	F100C	probably damaging	Het
Tubgcp5	A	G	7: 55,467,106 (GRCm39)	Y692C	probably damaging	Het
Ube2d2a	T	C	18: 35,933,197 (GRCm39)	I78T	probably benign	Het
Ugt2b37	C	T	5: 87,401,996 (GRCm39)	V212I	probably benign	Het
Wars2	A	G	3: 99,124,063 (GRCm39)	D308G	possibly damaging	Het
Yeats2	G	A	16: 20,030,500 (GRCm39)		probably null	Het
Zfp385a	G	T	15: 103,224,318 (GRCm39)	H219N	possibly damaging	Het
Zfp407	T	C	18: 84,227,982 (GRCm39)	T1876A	probably damaging	Het

Other mutations in L1td1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01599:L1td1	APN	4	98,625,581 (GRCm39)	missense	probably damaging	0.99
IGL02529:L1td1	APN	4	98,625,658 (GRCm39)	missense	probably benign	0.01
R0254:L1td1	UTSW	4	98,625,419 (GRCm39)	nonsense	probably null
R0924:L1td1	UTSW	4	98,625,862 (GRCm39)	missense	probably damaging	1.00
R0930:L1td1	UTSW	4	98,625,862 (GRCm39)	missense	probably damaging	1.00
R1434:L1td1	UTSW	4	98,626,054 (GRCm39)	missense	possibly damaging	0.91
R1573:L1td1	UTSW	4	98,625,517 (GRCm39)	missense	probably benign	0.01
R1751:L1td1	UTSW	4	98,625,686 (GRCm39)	missense	probably benign	0.32
R1767:L1td1	UTSW	4	98,625,686 (GRCm39)	missense	probably benign	0.32
R1870:L1td1	UTSW	4	98,625,714 (GRCm39)	missense	possibly damaging	0.93
R2006:L1td1	UTSW	4	98,621,726 (GRCm39)	missense	possibly damaging	0.53
R2252:L1td1	UTSW	4	98,625,874 (GRCm39)	splice site	probably null
R2383:L1td1	UTSW	4	98,625,959 (GRCm39)	missense	possibly damaging	0.93
R2472:L1td1	UTSW	4	98,621,396 (GRCm39)	unclassified	probably benign
R3195:L1td1	UTSW	4	98,625,755 (GRCm39)	missense	possibly damaging	0.47
R3763:L1td1	UTSW	4	98,626,072 (GRCm39)	missense	probably damaging	0.99
R3950:L1td1	UTSW	4	98,625,590 (GRCm39)	missense	probably benign	0.12
R3962:L1td1	UTSW	4	98,625,686 (GRCm39)	missense	probably benign	0.32
R4430:L1td1	UTSW	4	98,625,388 (GRCm39)	missense	probably benign	0.00
R4643:L1td1	UTSW	4	98,626,120 (GRCm39)	missense	probably damaging	0.98
R4661:L1td1	UTSW	4	98,621,861 (GRCm39)	missense	possibly damaging	0.94
R4885:L1td1	UTSW	4	98,625,548 (GRCm39)	missense	probably benign	0.01
R5345:L1td1	UTSW	4	98,624,684 (GRCm39)	missense	probably damaging	1.00
R5589:L1td1	UTSW	4	98,626,341 (GRCm39)	missense	possibly damaging	0.66
R5800:L1td1	UTSW	4	98,621,999 (GRCm39)	missense	possibly damaging	0.96
R6207:L1td1	UTSW	4	98,625,655 (GRCm39)	missense	possibly damaging	0.55
R6309:L1td1	UTSW	4	98,625,328 (GRCm39)	missense	probably damaging	0.99
R6917:L1td1	UTSW	4	98,622,268 (GRCm39)	missense	probably benign	0.18
R6945:L1td1	UTSW	4	98,621,933 (GRCm39)	missense	probably benign	0.33
R7185:L1td1	UTSW	4	98,624,855 (GRCm39)	missense	possibly damaging	0.72
R7258:L1td1	UTSW	4	98,625,101 (GRCm39)	missense	probably benign	0.04
R7893:L1td1	UTSW	4	98,621,978 (GRCm39)	missense	possibly damaging	0.73
R8129:L1td1	UTSW	4	98,621,563 (GRCm39)	missense	probably benign	0.01
R8430:L1td1	UTSW	4	98,626,109 (GRCm39)	missense	probably damaging	1.00
R8485:L1td1	UTSW	4	98,625,911 (GRCm39)	missense	probably damaging	1.00
R8486:L1td1	UTSW	4	98,625,911 (GRCm39)	missense	probably damaging	1.00
R8549:L1td1	UTSW	4	98,626,280 (GRCm39)	missense	probably damaging	1.00
R8726:L1td1	UTSW	4	98,622,215 (GRCm39)	missense	probably damaging	0.98
R8787:L1td1	UTSW	4	98,625,814 (GRCm39)	missense	probably benign	0.06
R8920:L1td1	UTSW	4	98,624,864 (GRCm39)	nonsense	probably null
R8921:L1td1	UTSW	4	98,622,175 (GRCm39)	missense	possibly damaging	0.71
R9228:L1td1	UTSW	4	98,625,932 (GRCm39)	missense	possibly damaging	0.66
R9486:L1td1	UTSW	4	98,624,899 (GRCm39)	missense	probably benign
R9656:L1td1	UTSW	4	98,622,223 (GRCm39)	missense	probably benign	0.32
R9766:L1td1	UTSW	4	98,624,753 (GRCm39)	missense	probably benign	0.33
RF019:L1td1	UTSW	4	98,625,061 (GRCm39)	missense	not run
RF031:L1td1	UTSW	4	98,625,026 (GRCm39)	small deletion	probably benign
RF039:L1td1	UTSW	4	98,625,026 (GRCm39)	small deletion	probably benign
RF060:L1td1	UTSW	4	98,625,031 (GRCm39)	small deletion	probably benign

Predicted Primers

PCR Primer
(F):5'- GGGACCCGTGTCTTTGAGAA -3'
(R):5'- GAGGTCTCTCCCTCTGAAGTT -3'

Sequencing Primer
(F):5'- ACCCGTGTCTTTGAGAATAGACG -3'
(R):5'- AAGTTTCTTCTCCCTGTGTCTCTGAG -3'

Posted On

2021-12-30