Mutagenetix > Incidental Mutation

Incidental Mutation 'R9177:Galntl6'

696752

Institutional Source

Beutler Lab

Gene Symbol

Galntl6

Ensembl Gene

ENSMUSG00000096914

Gene Name

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

Synonyms

4930431L04Rik, 1700021K10Rik

MMRRC Submission

068949-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.069) question?

Stock #

R9177 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

58227086-59365674 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 58310590 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Stop codon at position 370 (Y370*)

Ref Sequence

ENSEMBL: ENSMUSP00000145321 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000204128]

AlphaFold

E5D8G1

Predicted Effect

probably null
Transcript: ENSMUST00000098757
AA Change: Y185*

SMART Domains

Protein: ENSMUSP00000096353
Gene: ENSMUSG00000096914
AA Change: Y185*

Domain	Start	End	E-Value	Type
Pfam:Glycos_transf_2	1	144	1.6e-18	PFAM
Pfam:Glyco_transf_7C	113	187	3.6e-12	PFAM
RICIN	268	401	7.9e-21	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000204128
AA Change: Y370*

SMART Domains

Protein: ENSMUSP00000145321
Gene: ENSMUSG00000096914
AA Change: Y370*

Domain	Start	End	E-Value	Type
transmembrane domain	13	31	N/A	INTRINSIC
Pfam:Glyco_tranf_2_3	140	404	2.1e-9	PFAM
Pfam:Glycos_transf_2	143	328	7.3e-33	PFAM
Pfam:Glyco_tranf_2_2	143	356	1.2e-8	PFAM
Pfam:Glyco_transf_7C	297	371	6.2e-12	PFAM
RICIN	452	585	7.9e-21	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	T	A	3: 137,775,677 (GRCm39)	V1622D	probably damaging	Het
Acadsb	C	T	7: 131,033,763 (GRCm39)	T260I	probably damaging	Het
Acap2	A	T	16: 30,955,392 (GRCm39)	V161E	probably damaging	Het
Alk	T	C	17: 72,181,190 (GRCm39)	T1367A	probably damaging	Het
Atg2a	A	C	19: 6,291,905 (GRCm39)	H27P	probably damaging	Het
Atp2c1	C	T	9: 105,336,858 (GRCm39)		probably null	Het
C1s1	T	G	6: 124,508,362 (GRCm39)	K542N	probably damaging	Het
Camk1d	A	G	2: 5,303,901 (GRCm39)	S351P	probably benign	Het
Carf	C	A	1: 60,148,558 (GRCm39)	Q85K	possibly damaging	Het
Caskin2	T	C	11: 115,698,683 (GRCm39)	N43S	probably damaging	Het
Cd40	T	C	2: 164,905,465 (GRCm39)	C161R	probably damaging	Het
Cdh19	A	G	1: 110,877,111 (GRCm39)	F76S	probably damaging	Het
Cdkl1	T	C	12: 69,794,100 (GRCm39)	N346D	probably benign	Het
Cdon	A	G	9: 35,381,230 (GRCm39)	D540G	probably benign	Het
Cep164	T	A	9: 45,691,060 (GRCm39)	E379V	probably damaging	Het
Clock	T	C	5: 76,377,256 (GRCm39)	N681S	probably benign	Het
Col15a1	G	C	4: 47,288,200 (GRCm39)		probably benign	Het
Col6a5	T	G	9: 105,808,152 (GRCm39)	K965N	unknown	Het
Dctn4	T	A	18: 60,659,304 (GRCm39)	M1K	probably null	Het
Dhx30	T	C	9: 109,915,750 (GRCm39)	D741G	probably damaging	Het
Dhx37	A	G	5: 125,507,958 (GRCm39)	V104A	probably benign	Het
Dnah12	A	G	14: 26,571,255 (GRCm39)	K2788R	possibly damaging	Het
Egfr	T	A	11: 16,855,410 (GRCm39)	D898E	probably damaging	Het
Eif2ak4	G	C	2: 118,271,701 (GRCm39)		probably null	Het
Eif6	A	G	2: 155,665,852 (GRCm39)	L101P	probably damaging	Het
Etaa1	A	T	11: 17,896,419 (GRCm39)	V566E	probably damaging	Het
Far2	C	T	6: 148,060,418 (GRCm39)	T257I	probably benign	Het
Fuca2	G	A	10: 13,390,563 (GRCm39)	W453*	probably null	Het
Gcn1	T	C	5: 115,719,867 (GRCm39)	V374A	probably benign	Het
Hjv	T	C	3: 96,435,881 (GRCm39)	F380L	probably benign	Het
Hycc2	T	C	1: 58,591,361 (GRCm39)	D94G	probably damaging	Het
Ifi202b	A	T	1: 173,804,949 (GRCm39)	M1K	probably null	Het
Lama4	A	G	10: 38,950,688 (GRCm39)	Y997C	probably damaging	Het
Lepr	T	A	4: 101,602,798 (GRCm39)	C195*	probably null	Het
Lrrc37	T	A	11: 103,508,263 (GRCm39)	H1235L	unknown	Het
Lrrc73	T	C	17: 46,565,535 (GRCm39)	S89P	probably benign	Het
Macf1	T	C	4: 123,367,582 (GRCm39)	E2393G	probably damaging	Het
Mdga2	T	A	12: 66,517,481 (GRCm39)	T118S	possibly damaging	Het
Msantd5f3	T	C	4: 73,575,373 (GRCm39)	S351P	probably damaging	Het
Mtf2	A	G	5: 108,234,949 (GRCm39)	K124R	probably benign	Het
Muc5b	T	C	7: 141,399,075 (GRCm39)	Y339H	unknown	Het
Nes	G	A	3: 87,887,012 (GRCm39)	G1757E	probably damaging	Het
Nfatc4	A	T	14: 56,064,685 (GRCm39)	I391F	probably damaging	Het
Nup93	A	T	8: 94,954,371 (GRCm39)	I23F	probably benign	Het
Or4a27	A	C	2: 88,559,174 (GRCm39)	Y256*	probably null	Het
Or5h17	T	G	16: 58,820,083 (GRCm39)	F12V	probably damaging	Het
Or6y1	A	C	1: 174,276,923 (GRCm39)	T245P	probably damaging	Het
Or7g16	G	T	9: 18,726,742 (GRCm39)	Q283K	probably damaging	Het
Or9i14	A	T	19: 13,792,388 (GRCm39)	C189S	probably damaging	Het
Pak5	A	C	2: 135,943,126 (GRCm39)	M338R	probably benign	Het
Papola	A	G	12: 105,766,032 (GRCm39)	E44G	probably benign	Het
Pcdh15	A	T	10: 74,479,455 (GRCm39)	E522V	probably benign	Het
Peli2	A	G	14: 48,518,927 (GRCm39)	E225G	probably benign	Het
Pla2g1b	T	G	5: 115,612,595 (GRCm39)	I117S	probably damaging	Het
Plxnd1	G	T	6: 115,943,469 (GRCm39)	Q1246K	probably benign	Het
Pole	A	G	5: 110,480,288 (GRCm39)	E1953G	probably benign	Het
Pus7l	T	C	15: 94,431,445 (GRCm39)	I395V	probably benign	Het
Shisa7	T	G	7: 4,837,333 (GRCm39)	D244A	probably damaging	Het
Slco3a1	T	C	7: 73,952,946 (GRCm39)	T538A	probably benign	Het
Syk	T	A	13: 52,766,480 (GRCm39)	N188K	probably benign	Het
Tcf20	A	G	15: 82,740,705 (GRCm39)	S249P	probably benign	Het
Tmem25	T	C	9: 44,709,529 (GRCm39)	T91A	possibly damaging	Het
Trank1	T	C	9: 111,221,579 (GRCm39)	V2772A	probably benign	Het
Ttn	A	T	2: 76,596,447 (GRCm39)	Y20155*	probably null	Het
Uchl4	C	T	9: 64,142,986 (GRCm39)	H156Y	probably benign	Het
Ulbp1	A	T	10: 7,396,392 (GRCm39)	L295Q	unknown	Het
Vwf	G	A	6: 125,581,254 (GRCm39)	A631T		Het
Zfp810	C	T	9: 22,189,936 (GRCm39)	C324Y	probably damaging	Het
Zswim8	T	C	14: 20,761,908 (GRCm39)	L227P	probably damaging	Het

Other mutations in Galntl6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00489:Galntl6	APN	8	58,310,574 (GRCm39)	missense	probably damaging	1.00
IGL00557:Galntl6	APN	8	59,364,451 (GRCm39)	missense	possibly damaging	0.71
IGL01140:Galntl6	APN	8	58,411,356 (GRCm39)	missense	probably damaging	1.00
IGL01412:Galntl6	APN	8	58,230,328 (GRCm39)	missense	probably damaging	0.99
IGL01458:Galntl6	APN	8	58,880,743 (GRCm39)	missense	probably damaging	1.00
IGL01575:Galntl6	APN	8	58,880,710 (GRCm39)	intron	probably benign
IGL01700:Galntl6	APN	8	58,411,494 (GRCm39)	splice site	probably benign
IGL01710:Galntl6	APN	8	58,989,002 (GRCm39)	missense	probably damaging	0.97
IGL02611:Galntl6	APN	8	58,411,450 (GRCm39)	missense	probably damaging	1.00
IGL02880:Galntl6	APN	8	58,257,306 (GRCm39)	missense	probably benign	0.44
IGL03129:Galntl6	APN	8	58,880,750 (GRCm39)	missense	probably damaging	1.00
IGL03215:Galntl6	APN	8	59,364,436 (GRCm39)	missense	probably benign	0.00
IGL03249:Galntl6	APN	8	58,230,210 (GRCm39)	utr 3 prime	probably benign
Fragilistic	UTSW	8	58,989,018 (GRCm39)	missense	probably benign
Indubitably	UTSW	8	58,880,804 (GRCm39)	missense	probably damaging	1.00
PIT4677001:Galntl6	UTSW	8	58,310,621 (GRCm39)	missense	probably damaging	1.00
R0600:Galntl6	UTSW	8	58,290,217 (GRCm39)	splice site	probably null
R0731:Galntl6	UTSW	8	58,989,018 (GRCm39)	missense	probably benign
R0961:Galntl6	UTSW	8	59,364,374 (GRCm39)	missense	probably benign
R1381:Galntl6	UTSW	8	58,925,989 (GRCm39)	missense	probably damaging	0.99
R2137:Galntl6	UTSW	8	58,988,939 (GRCm39)	critical splice donor site	probably null
R4632:Galntl6	UTSW	8	58,880,857 (GRCm39)	missense	probably damaging	1.00
R4731:Galntl6	UTSW	8	58,880,847 (GRCm39)	missense	probably damaging	1.00
R4732:Galntl6	UTSW	8	58,880,847 (GRCm39)	missense	probably damaging	1.00
R4733:Galntl6	UTSW	8	58,880,847 (GRCm39)	missense	probably damaging	1.00
R4920:Galntl6	UTSW	8	58,880,807 (GRCm39)	missense	probably damaging	0.97
R4964:Galntl6	UTSW	8	59,152,945 (GRCm39)	intron	probably benign
R5357:Galntl6	UTSW	8	58,337,497 (GRCm39)	missense	probably damaging	0.99
R5526:Galntl6	UTSW	8	58,926,004 (GRCm39)	missense	probably benign
R5951:Galntl6	UTSW	8	58,415,436 (GRCm39)	missense	probably benign	0.06
R5965:Galntl6	UTSW	8	58,310,565 (GRCm39)	missense	probably benign	0.03
R6260:Galntl6	UTSW	8	58,337,515 (GRCm39)	missense	probably damaging	1.00
R6368:Galntl6	UTSW	8	59,364,475 (GRCm39)	missense	probably damaging	1.00
R6695:Galntl6	UTSW	8	58,880,804 (GRCm39)	missense	probably damaging	1.00
R7593:Galntl6	UTSW	8	58,230,293 (GRCm39)	missense	probably damaging	1.00
R7780:Galntl6	UTSW	8	58,880,733 (GRCm39)	critical splice donor site	probably null
R7833:Galntl6	UTSW	8	58,310,571 (GRCm39)	missense	probably benign
R7871:Galntl6	UTSW	8	58,290,222 (GRCm39)	missense	probably damaging	0.98
R8097:Galntl6	UTSW	8	58,415,407 (GRCm39)	splice site	probably null
R8891:Galntl6	UTSW	8	58,415,433 (GRCm39)	missense	probably damaging	1.00
R9196:Galntl6	UTSW	8	58,415,461 (GRCm39)	missense	probably damaging	1.00
R9384:Galntl6	UTSW	8	58,415,461 (GRCm39)	missense	probably damaging	1.00
R9454:Galntl6	UTSW	8	58,411,435 (GRCm39)	missense	probably damaging	0.99
R9474:Galntl6	UTSW	8	58,230,359 (GRCm39)	missense	probably damaging	0.99
R9482:Galntl6	UTSW	8	58,310,549 (GRCm39)	critical splice donor site	probably null
R9497:Galntl6	UTSW	8	58,290,410 (GRCm39)	missense	probably damaging	0.99
Z1176:Galntl6	UTSW	8	58,310,592 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GGGAACTCTTGCCACATAGG -3'
(R):5'- CATTGTTGACTTCACTGTTTGGAAAA -3'

Sequencing Primer
(F):5'- GGAACTCTTGCCACATAGGAGTTTC -3'
(R):5'- TGGAACATGATCATCTGGCC -3'

Posted On

2022-02-07