Incidental Mutation 'R0967:Or52n4b'
| ID |
83908 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or52n4b
|
| Ensembl Gene |
ENSMUSG00000060759 |
| Gene Name |
olfactory receptor family 52 subfamily N member 4B |
| Synonyms |
MOR34-9, MOR34-12, GA_x6K02T2PBJ9-10874315-10875286, MOR34-8P, Olfr503, Olfr1548, MOR34-9 |
| MMRRC Submission |
039096-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.056)
|
| Stock # |
R0967 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
108143734-108144705 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 108143996 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Threonine
at position 86
(I86T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000147778
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000078162]
[ENSMUST00000211693]
|
| AlphaFold |
Q7TRU8 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000078162
AA Change: I88T
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000077296
Gene: ENSMUSG00000060759
AA Change: I88T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
35 |
315 |
3e-103 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
39 |
268 |
2.4e-7 |
PFAM |
|
Pfam:7tm_1
|
45 |
297 |
9.2e-17 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000211693
AA Change: I86T
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| Meta Mutation Damage Score |
0.3256 |
| Coding Region Coverage |
- 1x: 99.6%
- 3x: 98.7%
- 10x: 96.1%
- 20x: 90.5%
|
| Validation Efficiency |
100% (44/44) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 40 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts19 |
G |
T |
18: 59,105,812 (GRCm39) |
E736* |
probably null |
Het |
| Atxn7l3 |
C |
G |
11: 102,183,261 (GRCm39) |
|
probably benign |
Het |
| Camk1g |
T |
C |
1: 193,032,604 (GRCm39) |
E269G |
probably damaging |
Het |
| Ccrl2 |
G |
A |
9: 110,884,754 (GRCm39) |
T248M |
probably benign |
Het |
| Chd9 |
T |
C |
8: 91,716,107 (GRCm39) |
S421P |
probably damaging |
Het |
| Cndp1 |
G |
A |
18: 84,652,777 (GRCm39) |
|
probably benign |
Het |
| Cplane2 |
T |
C |
4: 140,947,162 (GRCm39) |
M181T |
probably benign |
Het |
| Csmd3 |
T |
C |
15: 47,721,227 (GRCm39) |
E1468G |
probably null |
Het |
| Cyc1 |
T |
C |
15: 76,229,848 (GRCm39) |
|
probably benign |
Het |
| Fli1 |
T |
A |
9: 32,372,745 (GRCm39) |
T98S |
probably benign |
Het |
| Gk2 |
T |
C |
5: 97,604,155 (GRCm39) |
S228G |
probably benign |
Het |
| Gse1 |
T |
A |
8: 121,297,594 (GRCm39) |
|
probably benign |
Het |
| Hgf |
T |
A |
5: 16,798,839 (GRCm39) |
|
probably benign |
Het |
| Hif1a |
G |
A |
12: 73,984,444 (GRCm39) |
V300I |
possibly damaging |
Het |
| Hsd17b4 |
C |
A |
18: 50,316,328 (GRCm39) |
H652N |
probably benign |
Het |
| Hsh2d |
G |
A |
8: 72,954,304 (GRCm39) |
D229N |
probably benign |
Het |
| Kif5c |
T |
A |
2: 49,588,128 (GRCm39) |
|
probably benign |
Het |
| Lgr6 |
T |
C |
1: 134,921,750 (GRCm39) |
Y198C |
probably damaging |
Het |
| Lpcat2b |
T |
A |
5: 107,582,084 (GRCm39) |
M471K |
possibly damaging |
Het |
| Med21 |
A |
G |
6: 146,551,697 (GRCm39) |
E116G |
probably benign |
Het |
| Mos |
A |
G |
4: 3,870,932 (GRCm39) |
S295P |
probably benign |
Het |
| Ms4a15 |
A |
T |
19: 10,956,685 (GRCm39) |
V209E |
probably damaging |
Het |
| Mttp |
A |
G |
3: 137,798,484 (GRCm39) |
V804A |
probably benign |
Het |
| Or10ah1-ps1 |
A |
G |
5: 143,123,594 (GRCm39) |
M121T |
probably damaging |
Het |
| Or5ac23 |
T |
A |
16: 59,149,546 (GRCm39) |
T109S |
possibly damaging |
Het |
| Plagl1 |
T |
C |
10: 13,003,986 (GRCm39) |
|
probably benign |
Het |
| Prpf8 |
T |
A |
11: 75,385,256 (GRCm39) |
V797E |
probably damaging |
Het |
| Rars2 |
A |
G |
4: 34,646,587 (GRCm39) |
D284G |
probably benign |
Het |
| Rassf8 |
T |
C |
6: 145,765,676 (GRCm39) |
|
probably benign |
Het |
| Rfx3 |
A |
G |
19: 27,783,751 (GRCm39) |
|
probably benign |
Het |
| Ripk4 |
A |
T |
16: 97,545,372 (GRCm39) |
M362K |
probably damaging |
Het |
| Rubcn |
C |
A |
16: 32,646,087 (GRCm39) |
E815D |
probably benign |
Het |
| Scn8a |
A |
G |
15: 100,933,527 (GRCm39) |
Y1577C |
probably damaging |
Het |
| Sec24b |
C |
T |
3: 129,790,431 (GRCm39) |
R698Q |
probably damaging |
Het |
| Ssc5d |
T |
A |
7: 4,947,342 (GRCm39) |
L1232* |
probably null |
Het |
| Usp7 |
A |
T |
16: 8,514,518 (GRCm39) |
|
probably benign |
Het |
| Vmn2r51 |
T |
G |
7: 9,834,012 (GRCm39) |
H342P |
probably damaging |
Het |
| Vmn2r70 |
A |
G |
7: 85,208,827 (GRCm39) |
M550T |
probably damaging |
Het |
| Vmn2r81 |
T |
C |
10: 79,083,857 (GRCm39) |
|
probably benign |
Het |
| Zc3h13 |
T |
C |
14: 75,581,179 (GRCm39) |
I1722T |
possibly damaging |
Het |
|
| Other mutations in Or52n4b |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01308:Or52n4b
|
APN |
7 |
108,143,933 (GRCm39) |
nonsense |
probably null |
|
|
IGL02031:Or52n4b
|
APN |
7 |
108,144,137 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02426:Or52n4b
|
APN |
7 |
108,144,187 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02502:Or52n4b
|
APN |
7 |
108,143,846 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03208:Or52n4b
|
APN |
7 |
108,144,326 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0507:Or52n4b
|
UTSW |
7 |
108,144,292 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1181:Or52n4b
|
UTSW |
7 |
108,144,509 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1501:Or52n4b
|
UTSW |
7 |
108,143,782 (GRCm39) |
missense |
probably benign |
|
|
R1596:Or52n4b
|
UTSW |
7 |
108,144,290 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R1657:Or52n4b
|
UTSW |
7 |
108,144,584 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
R1708:Or52n4b
|
UTSW |
7 |
108,143,781 (GRCm39) |
missense |
probably benign |
0.04 |
|
R2215:Or52n4b
|
UTSW |
7 |
108,144,095 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4131:Or52n4b
|
UTSW |
7 |
108,143,744 (GRCm39) |
nonsense |
probably null |
|
|
R4772:Or52n4b
|
UTSW |
7 |
108,144,092 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5009:Or52n4b
|
UTSW |
7 |
108,144,055 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5297:Or52n4b
|
UTSW |
7 |
108,144,611 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5788:Or52n4b
|
UTSW |
7 |
108,144,551 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R5944:Or52n4b
|
UTSW |
7 |
108,144,484 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R6522:Or52n4b
|
UTSW |
7 |
108,144,202 (GRCm39) |
missense |
probably benign |
0.09 |
|
R7045:Or52n4b
|
UTSW |
7 |
108,144,452 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7339:Or52n4b
|
UTSW |
7 |
108,144,107 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7558:Or52n4b
|
UTSW |
7 |
108,143,928 (GRCm39) |
nonsense |
probably null |
|
|
R7585:Or52n4b
|
UTSW |
7 |
108,144,598 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9209:Or52n4b
|
UTSW |
7 |
108,144,664 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GTCATGTCAGCGAGGAATAACCCAG -3'
(R):5'- ATTAGCAGAACGCCCCTCAGGAAG -3'
Sequencing Primer
(F):5'- TGGAACACATGCACATCTGG -3'
(R):5'- AGGTGGCTAACCCAATCTTG -3'
|
| Posted On |
2013-11-08 |
Incidental Mutation