Mutagenetix > Incidental Mutation

Incidental Mutation 'R4789:Pcsk5'

367366

Institutional Source

Beutler Lab

Gene Symbol

Pcsk5

Ensembl Gene

ENSMUSG00000024713

Gene Name

proprotein convertase subtilisin/kexin type 5

Synonyms

PC5A, PC5/6A, PC6, b2b1549Clo, b2b585Clo, SPC6

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4789 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

17409683-17814996 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 17410963 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Methionine at position 1810 (V1810M)

Ref Sequence

ENSEMBL: ENSMUSP00000025618 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025618]

AlphaFold

Q04592

Predicted Effect

probably benign
Transcript: ENSMUST00000025618
AA Change: V1810M

PolyPhen 2 Score 0.088 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000025618
Gene: ENSMUSG00000024713
AA Change: V1810M

Domain	Start	End	E-Value	Type
low complexity region	17	29	N/A	INTRINSIC
Pfam:S8_pro-domain	40	116	4.6e-27	PFAM
Pfam:Peptidase_S8	164	447	2.1e-46	PFAM
Pfam:P_proprotein	507	597	2.1e-33	PFAM
FU	632	682	4.92e-13	SMART
FU	685	732	4.84e-12	SMART
EGF_like	690	723	3.29e1	SMART
FU	736	779	1.29e-7	SMART
FU	781	826	5.74e-14	SMART
FU	834	881	2.23e-11	SMART
EGF_like	839	870	3.43e1	SMART
FU	884	929	1.84e-12	SMART
FU	931	981	1.47e-11	SMART
FU	984	1030	1e-4	SMART
EGF_like	989	1020	2.92e1	SMART
FU	1034	1079	5.04e-10	SMART
FU	1081	1123	3.08e-5	SMART
FU	1127	1168	4.88e-8	SMART
FU	1206	1248	2.7e-10	SMART
EGF_like	1211	1239	5.91e1	SMART
FU	1252	1299	1.48e-7	SMART
EGF	1264	1305	1.69e1	SMART
FU	1301	1345	2.31e-9	SMART
FU	1347	1390	8.98e-7	SMART
EGF_like	1352	1381	7.23e1	SMART
FU	1392	1438	1.04e-11	SMART
FU	1442	1487	6.8e-7	SMART
EGF	1447	1476	2.16e1	SMART
FU	1491	1536	3.37e-11	SMART
FU	1540	1585	9.32e-14	SMART
EGF_like	1545	1576	2.8e1	SMART
FU	1589	1636	1.39e-12	SMART
FU	1640	1685	6.49e-13	SMART
EGF_like	1645	1676	6.67e1	SMART
FU	1691	1738	7.01e-9	SMART
transmembrane domain	1770	1789	N/A	INTRINSIC
low complexity region	1827	1840	N/A	INTRINSIC
low complexity region	1858	1876	N/A	INTRINSIC

Coding Region Coverage

1x: 98.8%
3x: 98.4%
10x: 96.9%
20x: 94.4%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a subtilisin-like proprotein convertase that mediates posttranslational endoproteolytic processing of various proprotein substrates traversing the secretory pathway. The encoded protein is an inactive zymogen that undergoes autoproteolytic processing in the endoplasmic reticulum and the Golgi network to generate an active enzyme. Mice lacking the encoded protein die at an early embryonic stage. Conditional inactivation this gene in the epiblast but not in the extraembryonic tissue bypasses embryonic lethality but results in death at birth. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2015]
PHENOTYPE: Mice homozygous for a null mutation in this gene display embryonic lethality between E4.5-E7.5. Mice homozygous for ENU-induced mutations exhibit heterotaxia with congenital heart defects and immotile respiratory cilia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110004F10Rik	C	A	7: 115,692,757 (GRCm39)	D20E	probably benign	Het
Abcb9	T	A	5: 124,216,853 (GRCm39)	M455L	probably benign	Het
Add2	G	A	6: 86,095,752 (GRCm39)	V475M	probably benign	Het
Apoh	T	A	11: 108,300,064 (GRCm39)	Y238N	probably damaging	Het
Arpp21	A	G	9: 111,896,360 (GRCm39)	S681P	probably benign	Het
Atp1a3	A	C	7: 24,698,389 (GRCm39)	F149C	probably damaging	Het
B9d1	A	G	11: 61,397,186 (GRCm39)	D27G	probably benign	Het
Bfar	T	A	16: 13,503,001 (GRCm39)	M1K	probably null	Het
Bok	T	C	1: 93,616,963 (GRCm39)	V103A	probably damaging	Het
Brca1	A	C	11: 101,414,758 (GRCm39)	H1125Q	probably benign	Het
Card9	T	A	2: 26,247,632 (GRCm39)	M218L	probably damaging	Het
Cers1	T	C	8: 70,776,018 (GRCm39)	V303A	probably damaging	Het
Col6a5	T	C	9: 105,814,534 (GRCm39)	I493V	unknown	Het
Coro7	T	C	16: 4,446,085 (GRCm39)	Y880C	probably damaging	Het
Cyp2b19	T	C	7: 26,463,801 (GRCm39)	Y318H	probably benign	Het
Dennd3	T	A	15: 73,394,131 (GRCm39)	L52Q	probably damaging	Het
Dlat	A	T	9: 50,570,670 (GRCm39)	C33S	probably benign	Het
Dmxl2	T	A	9: 54,287,099 (GRCm39)	Q2646L	probably benign	Het
Dnah3	T	C	7: 119,610,295 (GRCm39)	N1703D	probably damaging	Het
Dock10	T	A	1: 80,518,998 (GRCm39)	H1241L	probably damaging	Het
Fbxl17	T	G	17: 63,794,910 (GRCm39)	I391L	probably benign	Het
Fdxacb1	A	G	9: 50,681,418 (GRCm39)	D113G	possibly damaging	Het
Flii	A	G	11: 60,605,919 (GRCm39)	S1185P	probably benign	Het
Gm14496	A	T	2: 181,637,577 (GRCm39)	Q217L	possibly damaging	Het
Heatr9	A	T	11: 83,410,018 (GRCm39)	D74E	probably benign	Het
Heca	C	A	10: 17,783,895 (GRCm39)	E91*	probably null	Het
Ikzf4	T	G	10: 128,468,575 (GRCm39)	T635P	probably benign	Het
Kif17	C	T	4: 138,008,688 (GRCm39)	P382S	probably damaging	Het
Kmt5b	T	C	19: 3,865,330 (GRCm39)	V775A	probably benign	Het
Mapk8ip2	T	A	15: 89,343,241 (GRCm39)	F661Y	probably damaging	Het
Mapkap1	A	G	2: 34,423,859 (GRCm39)	E111G	possibly damaging	Het
Med9	T	A	11: 59,839,266 (GRCm39)	N58K	probably benign	Het
Mid2	T	A	X: 139,578,981 (GRCm39)	Y61N	probably damaging	Het
Mief1	T	A	15: 80,132,080 (GRCm39)	Y50*	probably null	Het
Mios	T	C	6: 8,235,429 (GRCm39)	M859T	probably benign	Het
Muc5ac	G	T	7: 141,352,619 (GRCm39)	C702F	possibly damaging	Het
Nkiras1	T	C	14: 18,276,935 (GRCm38)		probably benign	Het
Or11i1	A	C	3: 106,729,608 (GRCm39)	I89R	possibly damaging	Het
Or11i1	T	A	3: 106,729,624 (GRCm39)	M84L	possibly damaging	Het
Or56a3b	T	G	7: 104,771,520 (GRCm39)	H285Q	probably null	Het
Or5ae2	T	A	7: 84,506,509 (GRCm39)	C311S	probably benign	Het
Pex1	T	C	5: 3,680,270 (GRCm39)	V964A	probably damaging	Het
Pgm2l1	A	T	7: 99,916,794 (GRCm39)	M471L	probably benign	Het
Pkd1l2	T	C	8: 117,738,314 (GRCm39)	T2182A	probably damaging	Het
Plscr1l1	G	A	9: 92,233,084 (GRCm39)	C69Y	probably damaging	Het
Polr1b	T	A	2: 128,951,257 (GRCm39)	I290K	probably benign	Het
Prkg1	T	A	19: 31,563,045 (GRCm39)	M119L	probably damaging	Het
Rbl1	A	G	2: 157,019,275 (GRCm39)	V490A	probably benign	Het
Shtn1	G	C	19: 59,039,305 (GRCm39)	R45G	probably damaging	Het
Slc10a6	T	A	5: 103,776,848 (GRCm39)	Y84F	probably benign	Het
Slc25a23	T	C	17: 57,366,597 (GRCm39)	D26G	probably damaging	Het
Slc41a2	T	C	10: 83,152,320 (GRCm39)	K52E	probably damaging	Het
Slc4a5	T	C	6: 83,247,951 (GRCm39)	F501L	probably benign	Het
Slfn5	T	A	11: 82,847,226 (GRCm39)	M37K	probably benign	Het
Sptbn1	A	C	11: 30,067,759 (GRCm39)	F1818L	probably benign	Het
Taf3	T	C	2: 9,956,770 (GRCm39)	T466A	probably damaging	Het
Thbs2	C	T	17: 14,891,750 (GRCm39)	G929D	probably damaging	Het
Tmc3	A	T	7: 83,271,746 (GRCm39)	D995V	probably damaging	Het
Tmem262	T	C	19: 6,130,452 (GRCm39)	F59L	possibly damaging	Het
Triobp	A	G	15: 78,875,228 (GRCm39)	D137G	probably damaging	Het
Tspear	T	C	10: 77,702,199 (GRCm39)	F211L	possibly damaging	Het
Ttn	A	T	2: 76,728,670 (GRCm39)		probably benign	Het
Ugt2b5	T	A	5: 87,287,550 (GRCm39)	M206L	probably benign	Het
Ush1g	A	T	11: 115,209,466 (GRCm39)	S243T	probably damaging	Het
Usp19	A	T	9: 108,370,433 (GRCm39)	T86S	possibly damaging	Het
Wdhd1	A	G	14: 47,506,149 (GRCm39)	V255A	probably benign	Het
Wdr11	G	A	7: 129,220,394 (GRCm39)	W594*	probably null	Het
Wnk3	T	A	X: 149,993,933 (GRCm39)	Y331*	probably null	Het
Zfp429	A	T	13: 67,538,523 (GRCm39)	I307K	probably benign	Het
Zkscan14	T	A	5: 145,132,444 (GRCm39)	K362N	probably damaging	Het

Other mutations in Pcsk5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00418:Pcsk5	APN	19	17,488,785 (GRCm39)	missense	possibly damaging	0.49
IGL00423:Pcsk5	APN	19	17,619,923 (GRCm39)	missense	probably benign	0.23
IGL01315:Pcsk5	APN	19	17,429,322 (GRCm39)	missense	probably damaging	1.00
IGL01372:Pcsk5	APN	19	17,595,108 (GRCm39)	missense	probably damaging	1.00
IGL01738:Pcsk5	APN	19	17,411,144 (GRCm39)	splice site	probably benign
IGL01874:Pcsk5	APN	19	17,573,041 (GRCm39)	missense	probably damaging	0.96
IGL02070:Pcsk5	APN	19	17,416,406 (GRCm39)	missense	probably benign	0.25
IGL02311:Pcsk5	APN	19	17,410,784 (GRCm39)	nonsense	probably null
IGL02436:Pcsk5	APN	19	17,542,072 (GRCm39)	critical splice donor site	probably null
IGL02498:Pcsk5	APN	19	17,488,920 (GRCm39)	missense	probably damaging	0.99
IGL02504:Pcsk5	APN	19	17,455,236 (GRCm39)	critical splice donor site	probably null
IGL02664:Pcsk5	APN	19	17,434,134 (GRCm39)	missense	probably damaging	1.00
IGL02735:Pcsk5	APN	19	17,652,832 (GRCm39)	missense	probably damaging	1.00
IGL02941:Pcsk5	APN	19	17,424,865 (GRCm39)	missense	probably damaging	1.00
PIT4377001:Pcsk5	UTSW	19	17,416,466 (GRCm39)	missense	probably damaging	1.00
R0007:Pcsk5	UTSW	19	17,632,225 (GRCm39)	missense	probably damaging	1.00
R0007:Pcsk5	UTSW	19	17,632,225 (GRCm39)	missense	probably damaging	1.00
R0032:Pcsk5	UTSW	19	17,542,179 (GRCm39)	missense	possibly damaging	0.81
R0032:Pcsk5	UTSW	19	17,542,179 (GRCm39)	missense	possibly damaging	0.81
R0373:Pcsk5	UTSW	19	17,632,213 (GRCm39)	missense	probably damaging	1.00
R0784:Pcsk5	UTSW	19	17,692,133 (GRCm39)	missense	probably benign	0.06
R0843:Pcsk5	UTSW	19	17,632,182 (GRCm39)	missense	probably damaging	1.00
R1014:Pcsk5	UTSW	19	17,542,194 (GRCm39)	missense	probably damaging	1.00
R1221:Pcsk5	UTSW	19	17,814,512 (GRCm39)	missense	possibly damaging	0.85
R1435:Pcsk5	UTSW	19	17,541,246 (GRCm39)	nonsense	probably null
R1471:Pcsk5	UTSW	19	17,545,688 (GRCm39)	missense	probably damaging	1.00
R1564:Pcsk5	UTSW	19	17,632,120 (GRCm39)	missense	probably damaging	1.00
R1597:Pcsk5	UTSW	19	17,413,964 (GRCm39)	missense	probably benign	0.00
R1614:Pcsk5	UTSW	19	17,492,620 (GRCm39)	missense	probably damaging	1.00
R1661:Pcsk5	UTSW	19	17,424,938 (GRCm39)	missense	probably damaging	0.98
R1671:Pcsk5	UTSW	19	17,432,232 (GRCm39)	missense	probably damaging	1.00
R1703:Pcsk5	UTSW	19	17,729,458 (GRCm39)	missense	probably benign	0.15
R1793:Pcsk5	UTSW	19	17,432,114 (GRCm39)	missense	possibly damaging	0.83
R1855:Pcsk5	UTSW	19	17,492,556 (GRCm39)	missense	possibly damaging	0.93
R1909:Pcsk5	UTSW	19	17,410,825 (GRCm39)	missense	probably benign	0.00
R1959:Pcsk5	UTSW	19	17,410,782 (GRCm39)	missense	unknown
R2006:Pcsk5	UTSW	19	17,455,280 (GRCm39)	missense	probably benign	0.32
R2045:Pcsk5	UTSW	19	17,558,508 (GRCm39)	missense	possibly damaging	0.48
R2061:Pcsk5	UTSW	19	17,432,236 (GRCm39)	missense	probably benign	0.03
R2110:Pcsk5	UTSW	19	17,450,423 (GRCm39)	missense	probably damaging	1.00
R2402:Pcsk5	UTSW	19	17,452,198 (GRCm39)	nonsense	probably null
R2496:Pcsk5	UTSW	19	17,443,522 (GRCm39)	nonsense	probably null
R4115:Pcsk5	UTSW	19	17,410,783 (GRCm39)	missense	unknown
R4504:Pcsk5	UTSW	19	17,429,319 (GRCm39)	missense	probably damaging	1.00
R4616:Pcsk5	UTSW	19	17,538,114 (GRCm39)	missense	probably benign	0.00
R4683:Pcsk5	UTSW	19	17,450,405 (GRCm39)	missense	probably damaging	1.00
R4717:Pcsk5	UTSW	19	17,502,631 (GRCm39)	missense	probably damaging	1.00
R4761:Pcsk5	UTSW	19	17,814,512 (GRCm39)	missense	possibly damaging	0.85
R4880:Pcsk5	UTSW	19	17,425,054 (GRCm39)	missense	probably damaging	1.00
R5100:Pcsk5	UTSW	19	17,492,499 (GRCm39)	critical splice donor site	probably null
R5114:Pcsk5	UTSW	19	17,652,949 (GRCm39)	missense	probably damaging	1.00
R5116:Pcsk5	UTSW	19	17,440,798 (GRCm39)	missense	possibly damaging	0.87
R5193:Pcsk5	UTSW	19	17,542,174 (GRCm39)	missense	possibly damaging	0.79
R5279:Pcsk5	UTSW	19	17,573,022 (GRCm39)	splice site	probably null
R5334:Pcsk5	UTSW	19	17,439,215 (GRCm39)	missense	probably benign	0.00
R5369:Pcsk5	UTSW	19	17,558,619 (GRCm39)	missense	probably damaging	1.00
R5451:Pcsk5	UTSW	19	17,440,720 (GRCm39)	missense	possibly damaging	0.91
R5547:Pcsk5	UTSW	19	17,729,488 (GRCm39)	missense	probably benign	0.08
R5630:Pcsk5	UTSW	19	17,553,195 (GRCm39)	missense	probably benign	0.04
R5805:Pcsk5	UTSW	19	17,434,193 (GRCm39)	missense	probably benign	0.01
R6063:Pcsk5	UTSW	19	17,432,045 (GRCm39)	critical splice donor site	probably null
R6130:Pcsk5	UTSW	19	17,488,920 (GRCm39)	missense	probably damaging	0.99
R6153:Pcsk5	UTSW	19	17,488,856 (GRCm39)	missense	probably damaging	0.98
R6163:Pcsk5	UTSW	19	17,450,405 (GRCm39)	missense	probably damaging	1.00
R6164:Pcsk5	UTSW	19	17,814,317 (GRCm39)	critical splice donor site	probably null
R6228:Pcsk5	UTSW	19	17,558,631 (GRCm39)	missense	possibly damaging	0.91
R6426:Pcsk5	UTSW	19	17,595,093 (GRCm39)	missense	probably damaging	1.00
R6601:Pcsk5	UTSW	19	17,488,744 (GRCm39)	missense	probably benign	0.00
R6648:Pcsk5	UTSW	19	17,553,185 (GRCm39)	missense	probably damaging	0.99
R6789:Pcsk5	UTSW	19	17,434,150 (GRCm39)	missense	possibly damaging	0.93
R6807:Pcsk5	UTSW	19	17,549,986 (GRCm39)	splice site	probably null
R6837:Pcsk5	UTSW	19	17,416,448 (GRCm39)	missense	probably benign	0.01
R6998:Pcsk5	UTSW	19	17,450,476 (GRCm39)	missense	probably benign	0.20
R7051:Pcsk5	UTSW	19	17,411,095 (GRCm39)	missense	probably benign	0.00
R7164:Pcsk5	UTSW	19	17,429,349 (GRCm39)	missense	probably damaging	1.00
R7173:Pcsk5	UTSW	19	17,455,241 (GRCm39)	missense	possibly damaging	0.85
R7348:Pcsk5	UTSW	19	17,434,182 (GRCm39)	nonsense	probably null
R7360:Pcsk5	UTSW	19	17,492,577 (GRCm39)	missense	probably benign	0.00
R7407:Pcsk5	UTSW	19	17,652,880 (GRCm39)	missense	probably damaging	1.00
R7447:Pcsk5	UTSW	19	17,487,600 (GRCm39)	missense	probably benign	0.31
R7521:Pcsk5	UTSW	19	17,432,196 (GRCm39)	missense	probably benign	0.29
R7525:Pcsk5	UTSW	19	17,619,954 (GRCm39)	missense	probably damaging	1.00
R7560:Pcsk5	UTSW	19	17,814,336 (GRCm39)	missense	probably benign	0.01
R7566:Pcsk5	UTSW	19	17,549,821 (GRCm39)	missense	probably benign
R7631:Pcsk5	UTSW	19	17,542,144 (GRCm39)	missense	probably damaging	1.00
R7654:Pcsk5	UTSW	19	17,434,168 (GRCm39)	missense	possibly damaging	0.46
R7677:Pcsk5	UTSW	19	17,558,593 (GRCm39)	missense	possibly damaging	0.59
R7711:Pcsk5	UTSW	19	17,416,444 (GRCm39)	missense	possibly damaging	0.82
R7903:Pcsk5	UTSW	19	17,549,847 (GRCm39)	missense	probably damaging	0.98
R7938:Pcsk5	UTSW	19	17,443,549 (GRCm39)	critical splice acceptor site	probably null
R8025:Pcsk5	UTSW	19	17,538,415 (GRCm39)	intron	probably benign
R8032:Pcsk5	UTSW	19	17,692,151 (GRCm39)	missense	probably damaging	0.98
R8064:Pcsk5	UTSW	19	17,692,225 (GRCm39)	missense	probably damaging	1.00
R8115:Pcsk5	UTSW	19	17,487,530 (GRCm39)	critical splice donor site	probably null
R8193:Pcsk5	UTSW	19	17,563,415 (GRCm39)	missense	possibly damaging	0.64
R8408:Pcsk5	UTSW	19	17,410,809 (GRCm39)	missense	probably benign	0.00
R8466:Pcsk5	UTSW	19	17,549,864 (GRCm39)	nonsense	probably null
R8739:Pcsk5	UTSW	19	17,432,138 (GRCm39)	missense	probably benign	0.00
R8753:Pcsk5	UTSW	19	17,446,408 (GRCm39)	missense	probably benign	0.00
R8797:Pcsk5	UTSW	19	17,443,472 (GRCm39)	missense	probably benign	0.00
R8944:Pcsk5	UTSW	19	17,452,275 (GRCm39)	missense	probably damaging	0.96
R9041:Pcsk5	UTSW	19	17,538,132 (GRCm39)	nonsense	probably null
R9135:Pcsk5	UTSW	19	17,563,472 (GRCm39)	missense
R9288:Pcsk5	UTSW	19	17,814,345 (GRCm39)	missense	probably benign	0.10
R9406:Pcsk5	UTSW	19	17,771,097 (GRCm39)	missense	probably benign	0.14
R9581:Pcsk5	UTSW	19	17,432,196 (GRCm39)	missense	probably benign
R9592:Pcsk5	UTSW	19	17,652,899 (GRCm39)	nonsense	probably null
R9659:Pcsk5	UTSW	19	17,455,245 (GRCm39)	missense	probably benign	0.00
R9788:Pcsk5	UTSW	19	17,455,245 (GRCm39)	missense	probably benign	0.00
X0023:Pcsk5	UTSW	19	17,452,236 (GRCm39)	missense	possibly damaging	0.66
X0063:Pcsk5	UTSW	19	17,424,968 (GRCm39)	missense	probably damaging	1.00
Z1088:Pcsk5	UTSW	19	17,440,738 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AATGCATTGGTAGCTCCCAG -3'
(R):5'- ATGAGTGCATCCTTCCAGCC -3'

Sequencing Primer
(F):5'- GGTAAGAGTAGCTCTCATCATCG -3'
(R):5'- CCAGGGAGGCTGAGTTTTAC -3'

Posted On

2015-12-29