Mutagenetix > Incidental Mutation

Incidental Mutation 'R2255:B3gnt4'

241936

Institutional Source

Beutler Lab

Gene Symbol

B3gnt4

Ensembl Gene

ENSMUSG00000029431

Gene Name

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4

Synonyms

1010001G17Rik

MMRRC Submission

040255-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.073) question?

Stock #

R2255 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

123648523-123649945 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 123649342 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Leucine at position 236 (I236L)

Ref Sequence

ENSEMBL: ENSMUSP00000031384 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031384] [ENSMUST00000094327] [ENSMUST00000111586] [ENSMUST00000111587] [ENSMUST00000121444] [ENSMUST00000125652] [ENSMUST00000197682] [ENSMUST00000196809] [ENSMUST00000200247] [ENSMUST00000139398] [ENSMUST00000145152]

AlphaFold

Q1RLK6

Predicted Effect

probably damaging
Transcript: ENSMUST00000031384
AA Change: I236L

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000031384
Gene: ENSMUSG00000029431
AA Change: I236L

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:Galactosyl_T	106	297	1.3e-43	PFAM
Pfam:Fringe	169	302	2.8e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000094327

SMART Domains

Protein: ENSMUSP00000091885
Gene: ENSMUSG00000063409

Domain	Start	End	E-Value	Type
low complexity region	63	80	N/A	INTRINSIC
SCOP:d1a9na_	117	262	3e-16	SMART
low complexity region	389	402	N/A	INTRINSIC
low complexity region	537	565	N/A	INTRINSIC
low complexity region	614	629	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111586

SMART Domains

Protein: ENSMUSP00000107213
Gene: ENSMUSG00000029433

Domain	Start	End	E-Value	Type
Pfam:Smac_DIABLO	6	174	7.6e-85	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000111587

SMART Domains

Protein: ENSMUSP00000107214
Gene: ENSMUSG00000029433

Domain	Start	End	E-Value	Type
Pfam:Smac_DIABLO	9	237	4.1e-106	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000121444

SMART Domains

Protein: ENSMUSP00000113933
Gene: ENSMUSG00000063409

Domain	Start	End	E-Value	Type
low complexity region	63	80	N/A	INTRINSIC
SCOP:d1a9na_	117	262	4e-16	SMART
low complexity region	389	402	N/A	INTRINSIC
low complexity region	530	558	N/A	INTRINSIC
low complexity region	607	622	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000125652

SMART Domains

Protein: ENSMUSP00000115045
Gene: ENSMUSG00000029433

Domain	Start	End	E-Value	Type
Pfam:Smac_DIABLO	6	237	1.1e-111	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134552

Predicted Effect

probably benign
Transcript: ENSMUST00000197682

Predicted Effect

probably benign
Transcript: ENSMUST00000196809

SMART Domains

Protein: ENSMUSP00000143602
Gene: ENSMUSG00000063409

Domain	Start	End	E-Value	Type
low complexity region	63	80	N/A	INTRINSIC
SCOP:d1a9na_	117	262	2e-16	SMART
low complexity region	389	402	N/A	INTRINSIC
low complexity region	537	565	N/A	INTRINSIC
low complexity region	635	652	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000200247

SMART Domains

Protein: ENSMUSP00000143673
Gene: ENSMUSG00000029433

Domain	Start	End	E-Value	Type
Pfam:Smac_DIABLO	1	109	4.4e-57	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000139398

SMART Domains

Protein: ENSMUSP00000143485
Gene: ENSMUSG00000029433

Domain	Start	End	E-Value	Type
Pfam:Smac_DIABLO	6	150	7.1e-68	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000145152

SMART Domains

Protein: ENSMUSP00000143617
Gene: ENSMUSG00000029433

Domain	Start	End	E-Value	Type
Pfam:Smac_DIABLO	9	150	3.4e-62	PFAM

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 94.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the beta-1,3-N-acetylglucosaminyltransferase protein family. The encoded enzyme is involved in the biosynthesis of poly-N-acetyllactosamine chains and prefers lacto-N-neotetraose as a substrate. It is a type II transmembrane protein. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc10	G	A	17: 46,616,561 (GRCm39)	T1210I	probably benign	Het
Agbl1	T	C	7: 76,071,932 (GRCm39)	F581S	probably damaging	Het
Ambra1	A	T	2: 91,747,806 (GRCm39)	N1061Y	probably damaging	Het
Aoc1l1	G	A	6: 48,952,891 (GRCm39)	R272H	possibly damaging	Het
Arl6ip5	T	C	6: 97,209,361 (GRCm39)	L132S	probably damaging	Het
Atp10b	G	A	11: 43,125,207 (GRCm39)	V1058I	probably damaging	Het
Bmper	T	A	9: 23,292,759 (GRCm39)	I356N	possibly damaging	Het
Bpifa6	T	A	2: 153,832,815 (GRCm39)	I310N	probably damaging	Het
Btnl9	A	T	11: 49,060,143 (GRCm39)	L535*	probably null	Het
Capn3	A	G	2: 120,331,732 (GRCm39)	E614G	probably benign	Het
Catip	T	C	1: 74,408,159 (GRCm39)		probably benign	Het
Ccdc180	T	A	4: 45,921,996 (GRCm39)	S1023R	probably damaging	Het
Ces2g	G	A	8: 105,694,046 (GRCm39)	E461K	probably damaging	Het
Chad	C	A	11: 94,456,523 (GRCm39)	H200Q	possibly damaging	Het
Crbn	C	T	6: 106,772,159 (GRCm39)		probably null	Het
Crip3	G	C	17: 46,740,298 (GRCm39)	E33Q	probably damaging	Het
D130043K22Rik	A	T	13: 25,040,894 (GRCm39)	R105S	probably damaging	Het
Dmxl1	C	T	18: 49,979,706 (GRCm39)	H114Y	probably benign	Het
Dpp3	T	C	19: 4,968,347 (GRCm39)	N242D	probably benign	Het
Dtx3l	T	C	16: 35,756,949 (GRCm39)	N78S	probably benign	Het
Dync2h1	A	G	9: 6,955,905 (GRCm39)		probably null	Het
Esrp1	A	G	4: 11,365,211 (GRCm39)	V260A	probably damaging	Het
Etfdh	A	G	3: 79,511,349 (GRCm39)	V544A	probably benign	Het
Ezhip	T	G	X: 5,994,754 (GRCm39)	E87A	probably benign	Het
Fcgr1	G	T	3: 96,193,233 (GRCm39)	H255N	possibly damaging	Het
Fcrl2	G	T	3: 87,164,655 (GRCm39)	Y290*	probably null	Het
Frem2	A	G	3: 53,559,935 (GRCm39)	V1524A	probably damaging	Het
Gabbr1	T	C	17: 37,382,758 (GRCm39)	I817T	probably damaging	Het
Gapdhs	G	C	7: 30,429,333 (GRCm39)		probably null	Het
Gm57858	A	G	3: 36,074,099 (GRCm39)	V350A	probably benign	Het
Gopc	A	T	10: 52,225,181 (GRCm39)	I356K	probably damaging	Het
Gpi1	T	C	7: 33,902,302 (GRCm39)	N471S	probably damaging	Het
Gpr171	A	G	3: 59,005,628 (GRCm39)	V49A	probably benign	Het
Greb1l	T	A	18: 10,554,857 (GRCm39)	N1634K	probably damaging	Het
Gria1	G	A	11: 57,076,775 (GRCm39)	R57H	probably damaging	Het
Herpud1	A	G	8: 95,121,241 (GRCm39)	E344G	probably benign	Het
Hhip	A	G	8: 80,771,810 (GRCm39)	F167L	probably damaging	Het
Hp1bp3	T	A	4: 137,953,209 (GRCm39)	D84E	probably damaging	Het
Ier3	A	G	17: 36,133,153 (GRCm39)	Y145C	probably damaging	Het
Ifi47	A	T	11: 48,987,474 (GRCm39)	I414L	probably benign	Het
Ifnl2	C	T	7: 28,209,638 (GRCm39)	A50T	possibly damaging	Het
Jade1	A	G	3: 41,546,185 (GRCm39)	Y70C	probably damaging	Het
Kif1b	A	T	4: 149,359,454 (GRCm39)	F94L	probably damaging	Het
Krt33a	A	T	11: 99,905,004 (GRCm39)	D167E	possibly damaging	Het
Map1a	A	G	2: 121,134,272 (GRCm39)	D1458G	possibly damaging	Het
Mrgpra4	A	G	7: 47,631,523 (GRCm39)	L26S	possibly damaging	Het
Mtmr2	T	C	9: 13,707,353 (GRCm39)	Y230H	possibly damaging	Het
Nae1	T	A	8: 105,256,700 (GRCm39)	D69V	probably damaging	Het
Nbr1	T	A	11: 101,463,643 (GRCm39)	V625E	possibly damaging	Het
Nek1	T	C	8: 61,542,807 (GRCm39)	L702P	probably damaging	Het
Ntf3	T	C	6: 126,078,689 (GRCm39)	*272W	probably null	Het
Ofcc1	A	C	13: 40,248,181 (GRCm39)	L651R	probably damaging	Het
Olfm3	A	T	3: 114,915,842 (GRCm39)		probably null	Het
Pcdhb19	C	T	18: 37,630,997 (GRCm39)	A264V	probably benign	Het
Pear1	C	A	3: 87,659,493 (GRCm39)	W780C	probably damaging	Het
Pkhd1	T	A	1: 20,635,863 (GRCm39)	H489L	probably benign	Het
Pros1	T	A	16: 62,723,935 (GRCm39)	C228S	possibly damaging	Het
Rbm10	G	A	X: 20,501,978 (GRCm39)	R9H	unknown	Het
Rwdd1	T	C	10: 33,878,466 (GRCm39)	E123G	probably damaging	Het
Slc22a2	G	T	17: 12,818,062 (GRCm39)	V213F	probably damaging	Het
Slc34a1	T	C	13: 24,004,991 (GRCm39)	I412T	probably benign	Het
Smarca2	A	T	19: 26,748,438 (GRCm39)	I98L	probably benign	Het
Spag6l	T	C	16: 16,595,203 (GRCm39)	E394G	probably damaging	Het
Spdef	T	C	17: 27,939,269 (GRCm39)	T26A	probably benign	Het
Stk17b	T	C	1: 53,815,731 (GRCm39)	I23V	probably benign	Het
Sult2a7	A	G	7: 14,225,818 (GRCm39)	I56T	probably damaging	Het
Tango6	T	A	8: 107,415,926 (GRCm39)		probably null	Het
Tex46	T	C	4: 136,337,844 (GRCm39)	L12P	possibly damaging	Het
Ttn	T	A	2: 76,598,684 (GRCm39)	M19410L	possibly damaging	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Unc5cl	T	A	17: 48,766,974 (GRCm39)	I116N	possibly damaging	Het
Unc80	A	T	1: 66,657,417 (GRCm39)	I1630F	possibly damaging	Het
Upb1	G	A	10: 75,272,051 (GRCm39)	R288H	probably damaging	Het
Wdr62	T	G	7: 29,967,328 (GRCm39)	I309L	probably damaging	Het
Whrn	C	T	4: 63,336,385 (GRCm39)	V295M	possibly damaging	Het
Wrn	G	A	8: 33,819,230 (GRCm39)	P241S	probably benign	Het
Zer1	G	A	2: 29,998,286 (GRCm39)	L342F	probably damaging	Het
Zfp687	A	T	3: 94,917,748 (GRCm39)	C675S	probably damaging	Het
Zfp954	A	G	7: 7,118,321 (GRCm39)	Y408H	possibly damaging	Het

Other mutations in B3gnt4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01395:B3gnt4	APN	5	123,649,131 (GRCm39)	missense	probably damaging	1.00
IGL01791:B3gnt4	APN	5	123,649,162 (GRCm39)	missense	probably damaging	1.00
IGL02825:B3gnt4	APN	5	123,649,114 (GRCm39)	missense	possibly damaging	0.58
R1996:B3gnt4	UTSW	5	123,649,402 (GRCm39)	missense	probably damaging	1.00
R2070:B3gnt4	UTSW	5	123,649,433 (GRCm39)	missense	probably benign	0.00
R2071:B3gnt4	UTSW	5	123,649,433 (GRCm39)	missense	probably benign	0.00
R2254:B3gnt4	UTSW	5	123,649,342 (GRCm39)	missense	probably damaging	0.99
R3153:B3gnt4	UTSW	5	123,648,716 (GRCm39)	missense	probably benign	0.00
R3608:B3gnt4	UTSW	5	123,648,838 (GRCm39)	missense	probably damaging	1.00
R5021:B3gnt4	UTSW	5	123,649,010 (GRCm39)	missense	probably damaging	0.98
R6438:B3gnt4	UTSW	5	123,649,654 (GRCm39)	missense	probably benign	0.02
R6496:B3gnt4	UTSW	5	123,649,654 (GRCm39)	missense	probably benign	0.02
R7427:B3gnt4	UTSW	5	123,648,794 (GRCm39)	missense	probably damaging	0.99
R7428:B3gnt4	UTSW	5	123,648,794 (GRCm39)	missense	probably damaging	0.99
R7573:B3gnt4	UTSW	5	123,648,718 (GRCm39)	missense	probably benign
R8155:B3gnt4	UTSW	5	123,649,426 (GRCm39)	missense	possibly damaging	0.93
R8879:B3gnt4	UTSW	5	123,649,211 (GRCm39)	missense	probably damaging	1.00
R9682:B3gnt4	UTSW	5	123,649,516 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGACTCTCAAGGAGCTGCAC -3'
(R):5'- CTTGAAGCCAGCATGGTGTATG -3'

Sequencing Primer
(F):5'- ACGTGCAGCGCTGGATC -3'
(R):5'- CAGCATGGTGTATGGGAGTCAC -3'

Posted On

2014-10-16