Mutagenetix > Incidental Mutation

Incidental Mutation 'R2255:Ntf3'

241941

Institutional Source

Beutler Lab

Gene Symbol

Ntf3

Ensembl Gene

ENSMUSG00000049107

Gene Name

neurotrophin 3

Synonyms

NT3, Ntf-3, NT-3

MMRRC Submission

040255-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2255 (G1)

Quality Score

212

Status

Not validated

Chromosome

Chromosomal Location

126078375-126143703 bp(-) (GRCm39)

Type of Mutation

makesense

DNA Base Change (assembly)

T to C at 126078689 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Stop codon to Tryptophan at position 272 (*272W)

Ref Sequence

ENSEMBL: ENSMUSP00000144828 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050484] [ENSMUST00000112244] [ENSMUST00000204542]

AlphaFold

P20181

Predicted Effect

probably null
Transcript: ENSMUST00000050484
AA Change: *259W

SMART Domains

Protein: ENSMUSP00000052302
Gene: ENSMUSG00000049107
AA Change: *259W

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
NGF	145	250	1.19e-85	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000112244
AA Change: *272W

SMART Domains

Protein: ENSMUSP00000107863
Gene: ENSMUSG00000049107
AA Change: *272W

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
NGF	158	263	1.19e-85	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000204542
AA Change: *272W

SMART Domains

Protein: ENSMUSP00000144828
Gene: ENSMUSG00000049107
AA Change: *272W

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
NGF	158	263	1.19e-85	SMART

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 94.9%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a member of the neurotrophins that have a wide variety of functions in both neural and non-neural tissues. The encoded preproprotein undergoes proteolytic processing to generate a noncovalently linked homodimeric mature protein that can bind to the transmembrane receptor tyrosine kinases to initiate a series of signaling events. Mice lacking the encoded protein exhibit severe defects in the peripheral nervous system including a complete lack of spinal proprioceptive afferents and their peripheral sense organs. [provided by RefSeq, Sep 2016]
PHENOTYPE: Homozygotes for targeted null mutations exhibit loss of peripheral sensory and sympathetic neurons, lack of spinal propioceptive afferents and their sense organs, impaired suckling and movement, and postnatal lethality. Heterozygotes show mild defects. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc10	G	A	17: 46,616,561 (GRCm39)	T1210I	probably benign	Het
Agbl1	T	C	7: 76,071,932 (GRCm39)	F581S	probably damaging	Het
Ambra1	A	T	2: 91,747,806 (GRCm39)	N1061Y	probably damaging	Het
Aoc1l1	G	A	6: 48,952,891 (GRCm39)	R272H	possibly damaging	Het
Arl6ip5	T	C	6: 97,209,361 (GRCm39)	L132S	probably damaging	Het
Atp10b	G	A	11: 43,125,207 (GRCm39)	V1058I	probably damaging	Het
B3gnt4	A	C	5: 123,649,342 (GRCm39)	I236L	probably damaging	Het
Bmper	T	A	9: 23,292,759 (GRCm39)	I356N	possibly damaging	Het
Bpifa6	T	A	2: 153,832,815 (GRCm39)	I310N	probably damaging	Het
Btnl9	A	T	11: 49,060,143 (GRCm39)	L535*	probably null	Het
Capn3	A	G	2: 120,331,732 (GRCm39)	E614G	probably benign	Het
Catip	T	C	1: 74,408,159 (GRCm39)		probably benign	Het
Ccdc180	T	A	4: 45,921,996 (GRCm39)	S1023R	probably damaging	Het
Ces2g	G	A	8: 105,694,046 (GRCm39)	E461K	probably damaging	Het
Chad	C	A	11: 94,456,523 (GRCm39)	H200Q	possibly damaging	Het
Crbn	C	T	6: 106,772,159 (GRCm39)		probably null	Het
Crip3	G	C	17: 46,740,298 (GRCm39)	E33Q	probably damaging	Het
D130043K22Rik	A	T	13: 25,040,894 (GRCm39)	R105S	probably damaging	Het
Dmxl1	C	T	18: 49,979,706 (GRCm39)	H114Y	probably benign	Het
Dpp3	T	C	19: 4,968,347 (GRCm39)	N242D	probably benign	Het
Dtx3l	T	C	16: 35,756,949 (GRCm39)	N78S	probably benign	Het
Dync2h1	A	G	9: 6,955,905 (GRCm39)		probably null	Het
Esrp1	A	G	4: 11,365,211 (GRCm39)	V260A	probably damaging	Het
Etfdh	A	G	3: 79,511,349 (GRCm39)	V544A	probably benign	Het
Ezhip	T	G	X: 5,994,754 (GRCm39)	E87A	probably benign	Het
Fcgr1	G	T	3: 96,193,233 (GRCm39)	H255N	possibly damaging	Het
Fcrl2	G	T	3: 87,164,655 (GRCm39)	Y290*	probably null	Het
Frem2	A	G	3: 53,559,935 (GRCm39)	V1524A	probably damaging	Het
Gabbr1	T	C	17: 37,382,758 (GRCm39)	I817T	probably damaging	Het
Gapdhs	G	C	7: 30,429,333 (GRCm39)		probably null	Het
Gm57858	A	G	3: 36,074,099 (GRCm39)	V350A	probably benign	Het
Gopc	A	T	10: 52,225,181 (GRCm39)	I356K	probably damaging	Het
Gpi1	T	C	7: 33,902,302 (GRCm39)	N471S	probably damaging	Het
Gpr171	A	G	3: 59,005,628 (GRCm39)	V49A	probably benign	Het
Greb1l	T	A	18: 10,554,857 (GRCm39)	N1634K	probably damaging	Het
Gria1	G	A	11: 57,076,775 (GRCm39)	R57H	probably damaging	Het
Herpud1	A	G	8: 95,121,241 (GRCm39)	E344G	probably benign	Het
Hhip	A	G	8: 80,771,810 (GRCm39)	F167L	probably damaging	Het
Hp1bp3	T	A	4: 137,953,209 (GRCm39)	D84E	probably damaging	Het
Ier3	A	G	17: 36,133,153 (GRCm39)	Y145C	probably damaging	Het
Ifi47	A	T	11: 48,987,474 (GRCm39)	I414L	probably benign	Het
Ifnl2	C	T	7: 28,209,638 (GRCm39)	A50T	possibly damaging	Het
Jade1	A	G	3: 41,546,185 (GRCm39)	Y70C	probably damaging	Het
Kif1b	A	T	4: 149,359,454 (GRCm39)	F94L	probably damaging	Het
Krt33a	A	T	11: 99,905,004 (GRCm39)	D167E	possibly damaging	Het
Map1a	A	G	2: 121,134,272 (GRCm39)	D1458G	possibly damaging	Het
Mrgpra4	A	G	7: 47,631,523 (GRCm39)	L26S	possibly damaging	Het
Mtmr2	T	C	9: 13,707,353 (GRCm39)	Y230H	possibly damaging	Het
Nae1	T	A	8: 105,256,700 (GRCm39)	D69V	probably damaging	Het
Nbr1	T	A	11: 101,463,643 (GRCm39)	V625E	possibly damaging	Het
Nek1	T	C	8: 61,542,807 (GRCm39)	L702P	probably damaging	Het
Ofcc1	A	C	13: 40,248,181 (GRCm39)	L651R	probably damaging	Het
Olfm3	A	T	3: 114,915,842 (GRCm39)		probably null	Het
Pcdhb19	C	T	18: 37,630,997 (GRCm39)	A264V	probably benign	Het
Pear1	C	A	3: 87,659,493 (GRCm39)	W780C	probably damaging	Het
Pkhd1	T	A	1: 20,635,863 (GRCm39)	H489L	probably benign	Het
Pros1	T	A	16: 62,723,935 (GRCm39)	C228S	possibly damaging	Het
Rbm10	G	A	X: 20,501,978 (GRCm39)	R9H	unknown	Het
Rwdd1	T	C	10: 33,878,466 (GRCm39)	E123G	probably damaging	Het
Slc22a2	G	T	17: 12,818,062 (GRCm39)	V213F	probably damaging	Het
Slc34a1	T	C	13: 24,004,991 (GRCm39)	I412T	probably benign	Het
Smarca2	A	T	19: 26,748,438 (GRCm39)	I98L	probably benign	Het
Spag6l	T	C	16: 16,595,203 (GRCm39)	E394G	probably damaging	Het
Spdef	T	C	17: 27,939,269 (GRCm39)	T26A	probably benign	Het
Stk17b	T	C	1: 53,815,731 (GRCm39)	I23V	probably benign	Het
Sult2a7	A	G	7: 14,225,818 (GRCm39)	I56T	probably damaging	Het
Tango6	T	A	8: 107,415,926 (GRCm39)		probably null	Het
Tex46	T	C	4: 136,337,844 (GRCm39)	L12P	possibly damaging	Het
Ttn	T	A	2: 76,598,684 (GRCm39)	M19410L	possibly damaging	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Unc5cl	T	A	17: 48,766,974 (GRCm39)	I116N	possibly damaging	Het
Unc80	A	T	1: 66,657,417 (GRCm39)	I1630F	possibly damaging	Het
Upb1	G	A	10: 75,272,051 (GRCm39)	R288H	probably damaging	Het
Wdr62	T	G	7: 29,967,328 (GRCm39)	I309L	probably damaging	Het
Whrn	C	T	4: 63,336,385 (GRCm39)	V295M	possibly damaging	Het
Wrn	G	A	8: 33,819,230 (GRCm39)	P241S	probably benign	Het
Zer1	G	A	2: 29,998,286 (GRCm39)	L342F	probably damaging	Het
Zfp687	A	T	3: 94,917,748 (GRCm39)	C675S	probably damaging	Het
Zfp954	A	G	7: 7,118,321 (GRCm39)	Y408H	possibly damaging	Het

Other mutations in Ntf3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02552:Ntf3	APN	6	126,078,823 (GRCm39)	missense	probably damaging	0.99
IGL02982:Ntf3	APN	6	126,079,340 (GRCm39)	missense	probably damaging	0.99
PIT4403001:Ntf3	UTSW	6	126,078,789 (GRCm39)	missense	probably damaging	1.00
R0026:Ntf3	UTSW	6	126,078,768 (GRCm39)	missense	probably damaging	1.00
R1219:Ntf3	UTSW	6	126,079,174 (GRCm39)	missense	possibly damaging	0.93
R1666:Ntf3	UTSW	6	126,079,401 (GRCm39)	missense	possibly damaging	0.70
R1822:Ntf3	UTSW	6	126,079,209 (GRCm39)	missense	probably benign	0.10
R1920:Ntf3	UTSW	6	126,079,485 (GRCm39)	missense	possibly damaging	0.46
R3888:Ntf3	UTSW	6	126,079,405 (GRCm39)	missense	probably benign	0.18
R4196:Ntf3	UTSW	6	126,079,138 (GRCm39)	missense	probably benign	0.41
R6707:Ntf3	UTSW	6	126,141,691 (GRCm39)	critical splice donor site	probably null
R6983:Ntf3	UTSW	6	126,078,808 (GRCm39)	missense	probably damaging	0.98
R7357:Ntf3	UTSW	6	126,078,961 (GRCm39)	missense	probably damaging	1.00
R7663:Ntf3	UTSW	6	126,078,778 (GRCm39)	missense	probably damaging	1.00
R7895:Ntf3	UTSW	6	126,079,203 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GGCAAGCACACGAATTTTATTG -3'
(R):5'- CCGGTAACTCTCCTGTGAAAC -3'

Sequencing Primer
(F):5'- ACTGTAAGGGTTGCTGAA -3'
(R):5'- TGTAAAGAAGCCAGGCCGGTC -3'

Posted On

2014-10-16