Incidental Mutation 'R2567:Mgat4c'
ID |
254567 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Mgat4c
|
Ensembl Gene |
ENSMUSG00000019888 |
Gene Name |
MGAT4 family, member C |
Synonyms |
9130411I17Rik |
MMRRC Submission |
040426-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R2567 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
10 |
Chromosomal Location |
101517348-102227330 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 102214123 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Phenylalanine to Leucine
at position 35
(F35L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000116216
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000020039]
[ENSMUST00000120748]
[ENSMUST00000127504]
[ENSMUST00000138016]
[ENSMUST00000138522]
[ENSMUST00000156751]
[ENSMUST00000179929]
[ENSMUST00000163753]
[ENSMUST00000219195]
|
AlphaFold |
Q9D306 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000020039
AA Change: F35L
PolyPhen 2
Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000020039 Gene: ENSMUSG00000019888 AA Change: F35L
Domain | Start | End | E-Value | Type |
transmembrane domain
|
26 |
43 |
N/A |
INTRINSIC |
Pfam:Glyco_transf_54
|
44 |
330 |
5.3e-112 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000120748
AA Change: F35L
PolyPhen 2
Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000114010 Gene: ENSMUSG00000019888 AA Change: F35L
Domain | Start | End | E-Value | Type |
transmembrane domain
|
26 |
43 |
N/A |
INTRINSIC |
Pfam:Glyco_transf_54
|
44 |
330 |
5.3e-112 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000127504
AA Change: F35L
PolyPhen 2
Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000117148 Gene: ENSMUSG00000019888 AA Change: F35L
Domain | Start | End | E-Value | Type |
transmembrane domain
|
26 |
43 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000134930
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000138016
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000138522
AA Change: F35L
PolyPhen 2
Score 0.216 (Sensitivity: 0.91; Specificity: 0.88)
|
SMART Domains |
Protein: ENSMUSP00000118056 Gene: ENSMUSG00000019888 AA Change: F35L
Domain | Start | End | E-Value | Type |
low complexity region
|
26 |
38 |
N/A |
INTRINSIC |
Pfam:Glyco_transf_54
|
43 |
150 |
1.5e-22 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000156751
AA Change: F35L
PolyPhen 2
Score 0.377 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000116216 Gene: ENSMUSG00000019888 AA Change: F35L
Domain | Start | End | E-Value | Type |
transmembrane domain
|
26 |
43 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000179929
AA Change: F35L
PolyPhen 2
Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000135959 Gene: ENSMUSG00000019888 AA Change: F35L
Domain | Start | End | E-Value | Type |
transmembrane domain
|
26 |
43 |
N/A |
INTRINSIC |
Pfam:Glyco_transf_54
|
52 |
330 |
1.1e-96 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000163753
AA Change: F35L
PolyPhen 2
Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000131551 Gene: ENSMUSG00000019888 AA Change: F35L
Domain | Start | End | E-Value | Type |
transmembrane domain
|
26 |
43 |
N/A |
INTRINSIC |
Pfam:Glyco_transf_54
|
44 |
330 |
5.3e-112 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000219195
AA Change: F35L
PolyPhen 2
Score 0.322 (Sensitivity: 0.90; Specificity: 0.89)
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000218984
|
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.1%
- 20x: 94.6%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 67 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aadacl2fm1 |
A |
G |
3: 59,836,475 (GRCm39) |
|
probably benign |
Het |
Aebp1 |
A |
G |
11: 5,820,251 (GRCm39) |
D409G |
probably benign |
Het |
Akap10 |
A |
G |
11: 61,784,175 (GRCm39) |
|
probably benign |
Het |
Akap6 |
G |
T |
12: 52,985,156 (GRCm39) |
S863I |
probably damaging |
Het |
Ap1s3 |
T |
C |
1: 79,602,921 (GRCm39) |
K29E |
possibly damaging |
Het |
Atm |
T |
A |
9: 53,368,770 (GRCm39) |
I2341L |
possibly damaging |
Het |
Atp12a |
A |
T |
14: 56,624,384 (GRCm39) |
D944V |
probably damaging |
Het |
Baz2b |
A |
T |
2: 59,744,255 (GRCm39) |
S1417T |
possibly damaging |
Het |
Cacna1a |
T |
A |
8: 85,276,354 (GRCm39) |
M613K |
probably damaging |
Het |
Ccdc191 |
A |
C |
16: 43,764,330 (GRCm39) |
|
probably null |
Het |
Cd209d |
T |
A |
8: 3,926,327 (GRCm39) |
N96I |
probably damaging |
Het |
Cdh15 |
G |
A |
8: 123,588,763 (GRCm39) |
R279Q |
probably damaging |
Het |
Cdk4 |
T |
G |
10: 126,900,145 (GRCm39) |
V14G |
probably benign |
Het |
Chrna10 |
C |
A |
7: 101,761,276 (GRCm39) |
M438I |
probably benign |
Het |
Clec10a |
T |
C |
11: 70,060,358 (GRCm39) |
|
probably null |
Het |
Cog3 |
A |
G |
14: 75,991,730 (GRCm39) |
V40A |
probably benign |
Het |
Creb3l3 |
T |
C |
10: 80,921,883 (GRCm39) |
H315R |
probably benign |
Het |
Csmd3 |
CCTTTGCGCTT |
CCTT |
15: 47,604,632 (GRCm39) |
|
probably null |
Het |
Cubn |
A |
G |
2: 13,283,167 (GRCm39) |
|
probably null |
Het |
Cygb |
T |
C |
11: 116,540,692 (GRCm39) |
D98G |
probably damaging |
Het |
Dmbx1 |
T |
C |
4: 115,777,489 (GRCm39) |
K120E |
probably damaging |
Het |
Dnah3 |
T |
A |
7: 119,551,920 (GRCm39) |
I2800F |
possibly damaging |
Het |
Dntt |
G |
T |
19: 41,029,775 (GRCm39) |
R245L |
possibly damaging |
Het |
Dock1 |
T |
G |
7: 134,747,213 (GRCm39) |
V1508G |
probably damaging |
Het |
Enpp4 |
A |
C |
17: 44,412,736 (GRCm39) |
I266R |
probably damaging |
Het |
Fhl4 |
T |
C |
10: 84,934,644 (GRCm39) |
I46V |
possibly damaging |
Het |
Fn1 |
G |
A |
1: 71,636,895 (GRCm39) |
Q1995* |
probably null |
Het |
Foxl3 |
A |
G |
5: 138,805,940 (GRCm39) |
S36G |
probably null |
Het |
Foxo1 |
T |
A |
3: 52,176,755 (GRCm39) |
L178H |
probably damaging |
Het |
Galnt18 |
C |
T |
7: 111,153,823 (GRCm39) |
R267H |
probably damaging |
Het |
Gm1110 |
T |
C |
9: 26,831,992 (GRCm39) |
D53G |
probably benign |
Het |
Gm7104 |
A |
T |
12: 88,252,242 (GRCm39) |
|
noncoding transcript |
Het |
H2-M11 |
C |
T |
17: 36,859,042 (GRCm39) |
T194I |
possibly damaging |
Het |
Haus6 |
C |
A |
4: 86,504,122 (GRCm39) |
E501* |
probably null |
Het |
Ifna5 |
T |
C |
4: 88,754,147 (GRCm39) |
V129A |
probably benign |
Het |
Kdelr3 |
A |
G |
15: 79,407,032 (GRCm39) |
I38V |
probably benign |
Het |
Lamb1 |
A |
G |
12: 31,319,054 (GRCm39) |
|
probably null |
Het |
Larp7-ps |
T |
C |
4: 92,079,560 (GRCm39) |
E87G |
probably benign |
Het |
Mmab |
A |
T |
5: 114,571,378 (GRCm39) |
M166K |
probably benign |
Het |
Mrpl2 |
A |
G |
17: 46,958,427 (GRCm39) |
T70A |
probably benign |
Het |
Naa11 |
C |
T |
5: 97,539,618 (GRCm39) |
G180D |
probably benign |
Het |
Npy6r |
T |
C |
18: 44,408,888 (GRCm39) |
V103A |
possibly damaging |
Het |
Nup188 |
A |
T |
2: 30,231,794 (GRCm39) |
R1463W |
possibly damaging |
Het |
Nusap1 |
T |
A |
2: 119,474,311 (GRCm39) |
S336R |
possibly damaging |
Het |
Or8b12c |
T |
A |
9: 37,715,509 (GRCm39) |
F101I |
probably damaging |
Het |
Pabpc4 |
T |
A |
4: 123,191,744 (GRCm39) |
L589Q |
probably damaging |
Het |
Pcdh12 |
T |
A |
18: 38,415,149 (GRCm39) |
N659Y |
probably damaging |
Het |
Perm1 |
T |
C |
4: 156,301,575 (GRCm39) |
S40P |
probably damaging |
Het |
Phldb1 |
T |
C |
9: 44,637,322 (GRCm39) |
T114A |
probably damaging |
Het |
Pirt |
C |
T |
11: 66,816,985 (GRCm39) |
L99F |
probably damaging |
Het |
Plxdc2 |
A |
G |
2: 16,716,995 (GRCm39) |
R360G |
probably benign |
Het |
Rhpn2 |
G |
A |
7: 35,080,957 (GRCm39) |
|
probably null |
Het |
Rpusd2 |
T |
A |
2: 118,867,556 (GRCm39) |
I268N |
probably damaging |
Het |
Sds |
G |
T |
5: 120,619,646 (GRCm39) |
W185L |
probably damaging |
Het |
Serpinb5 |
A |
G |
1: 106,802,876 (GRCm39) |
K137R |
probably benign |
Het |
Sh3pxd2a |
A |
G |
19: 47,413,008 (GRCm39) |
V25A |
possibly damaging |
Het |
Slc1a2 |
C |
T |
2: 102,597,355 (GRCm39) |
T454I |
probably damaging |
Het |
Slc25a40 |
T |
C |
5: 8,480,459 (GRCm39) |
C70R |
probably damaging |
Het |
Smoc1 |
G |
A |
12: 81,214,364 (GRCm39) |
E260K |
probably damaging |
Het |
Sparcl1 |
A |
T |
5: 104,232,954 (GRCm39) |
F616I |
probably damaging |
Het |
Ssc5d |
A |
T |
7: 4,939,334 (GRCm39) |
D590V |
probably damaging |
Het |
Tns2 |
C |
T |
15: 102,017,369 (GRCm39) |
R281C |
probably damaging |
Het |
Trpm2 |
C |
T |
10: 77,777,008 (GRCm39) |
V430M |
probably damaging |
Het |
Ttn |
T |
C |
2: 76,574,672 (GRCm39) |
D25407G |
probably damaging |
Het |
Vmn2r68 |
T |
C |
7: 84,883,803 (GRCm39) |
I101V |
probably benign |
Het |
Xrcc4 |
A |
T |
13: 90,210,261 (GRCm39) |
M61K |
probably damaging |
Het |
Zfp648 |
A |
G |
1: 154,080,695 (GRCm39) |
T285A |
probably damaging |
Het |
|
Other mutations in Mgat4c |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00235:Mgat4c
|
APN |
10 |
102,224,581 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01293:Mgat4c
|
APN |
10 |
102,224,086 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01394:Mgat4c
|
APN |
10 |
102,220,975 (GRCm39) |
missense |
possibly damaging |
0.62 |
IGL01525:Mgat4c
|
APN |
10 |
102,214,057 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL02023:Mgat4c
|
APN |
10 |
102,214,045 (GRCm39) |
nonsense |
probably null |
|
IGL02150:Mgat4c
|
APN |
10 |
102,224,983 (GRCm39) |
missense |
probably benign |
0.08 |
IGL02296:Mgat4c
|
APN |
10 |
102,221,021 (GRCm39) |
splice site |
probably benign |
|
IGL02946:Mgat4c
|
APN |
10 |
102,225,114 (GRCm39) |
missense |
probably benign |
0.14 |
IGL03062:Mgat4c
|
APN |
10 |
102,224,322 (GRCm39) |
missense |
probably damaging |
1.00 |
R0001:Mgat4c
|
UTSW |
10 |
102,224,817 (GRCm39) |
missense |
probably benign |
0.01 |
R0326:Mgat4c
|
UTSW |
10 |
102,224,565 (GRCm39) |
missense |
probably damaging |
1.00 |
R0480:Mgat4c
|
UTSW |
10 |
102,224,980 (GRCm39) |
missense |
probably damaging |
0.97 |
R0656:Mgat4c
|
UTSW |
10 |
102,224,452 (GRCm39) |
missense |
probably damaging |
1.00 |
R0746:Mgat4c
|
UTSW |
10 |
102,224,548 (GRCm39) |
missense |
probably damaging |
1.00 |
R1639:Mgat4c
|
UTSW |
10 |
102,214,142 (GRCm39) |
missense |
probably damaging |
1.00 |
R1989:Mgat4c
|
UTSW |
10 |
102,214,020 (GRCm39) |
start codon destroyed |
probably null |
0.66 |
R2148:Mgat4c
|
UTSW |
10 |
102,224,790 (GRCm39) |
missense |
probably benign |
|
R2437:Mgat4c
|
UTSW |
10 |
102,224,436 (GRCm39) |
missense |
probably damaging |
1.00 |
R3780:Mgat4c
|
UTSW |
10 |
102,224,782 (GRCm39) |
missense |
probably benign |
0.25 |
R3781:Mgat4c
|
UTSW |
10 |
102,224,782 (GRCm39) |
missense |
probably benign |
0.25 |
R3782:Mgat4c
|
UTSW |
10 |
102,224,782 (GRCm39) |
missense |
probably benign |
0.25 |
R3786:Mgat4c
|
UTSW |
10 |
102,220,931 (GRCm39) |
missense |
probably damaging |
1.00 |
R3806:Mgat4c
|
UTSW |
10 |
102,224,221 (GRCm39) |
missense |
probably benign |
0.10 |
R4596:Mgat4c
|
UTSW |
10 |
102,224,422 (GRCm39) |
missense |
probably damaging |
1.00 |
R4718:Mgat4c
|
UTSW |
10 |
102,224,467 (GRCm39) |
missense |
probably damaging |
1.00 |
R4740:Mgat4c
|
UTSW |
10 |
102,224,265 (GRCm39) |
missense |
probably damaging |
1.00 |
R4872:Mgat4c
|
UTSW |
10 |
102,224,599 (GRCm39) |
missense |
probably damaging |
1.00 |
R5305:Mgat4c
|
UTSW |
10 |
102,225,140 (GRCm39) |
missense |
possibly damaging |
0.82 |
R5740:Mgat4c
|
UTSW |
10 |
102,225,182 (GRCm39) |
missense |
possibly damaging |
0.49 |
R5841:Mgat4c
|
UTSW |
10 |
102,224,826 (GRCm39) |
missense |
probably damaging |
0.98 |
R6367:Mgat4c
|
UTSW |
10 |
102,221,015 (GRCm39) |
critical splice donor site |
probably null |
|
R6459:Mgat4c
|
UTSW |
10 |
102,220,988 (GRCm39) |
missense |
probably damaging |
1.00 |
R7021:Mgat4c
|
UTSW |
10 |
102,224,289 (GRCm39) |
missense |
possibly damaging |
0.82 |
R7122:Mgat4c
|
UTSW |
10 |
102,214,070 (GRCm39) |
nonsense |
probably null |
|
R7146:Mgat4c
|
UTSW |
10 |
102,224,357 (GRCm39) |
missense |
probably damaging |
1.00 |
R7629:Mgat4c
|
UTSW |
10 |
102,224,931 (GRCm39) |
missense |
probably benign |
0.03 |
R7877:Mgat4c
|
UTSW |
10 |
102,220,900 (GRCm39) |
missense |
probably benign |
0.00 |
R8829:Mgat4c
|
UTSW |
10 |
102,214,084 (GRCm39) |
missense |
probably damaging |
1.00 |
R8872:Mgat4c
|
UTSW |
10 |
102,224,146 (GRCm39) |
missense |
probably damaging |
1.00 |
R9181:Mgat4c
|
UTSW |
10 |
102,225,123 (GRCm39) |
missense |
probably benign |
0.14 |
RF020:Mgat4c
|
UTSW |
10 |
102,224,928 (GRCm39) |
missense |
probably benign |
|
X0020:Mgat4c
|
UTSW |
10 |
102,224,251 (GRCm39) |
missense |
possibly damaging |
0.67 |
Z1177:Mgat4c
|
UTSW |
10 |
102,224,463 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1177:Mgat4c
|
UTSW |
10 |
102,224,311 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- GCAGAAACTGGAAACACCTAGTAAT -3'
(R):5'- TATGGCTAAATGTATACAGACAGGA -3'
Sequencing Primer
(F):5'- CTTGATAAACGTCAACATTATGCATG -3'
(R):5'- TGTATACAGACAGGAAATATGCAAAC -3'
|
Posted On |
2014-12-04 |