Incidental Mutation 'R2886:Kcnq5'
ID |
261034 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Kcnq5
|
Ensembl Gene |
ENSMUSG00000028033 |
Gene Name |
potassium voltage-gated channel, subfamily Q, member 5 |
Synonyms |
9230107O05Rik, D1Mgi1 |
MMRRC Submission |
040474-MU
|
Accession Numbers |
|
Essential gene? |
Possibly non essential
(E-score: 0.313)
|
Stock # |
R2886 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
1 |
Chromosomal Location |
21468627-22032166 bp(-) (GRCm39) |
Type of Mutation |
nonsense |
DNA Base Change (assembly) |
A to T
at 21539771 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Tyrosine to Stop codon
at position 382
(Y382*)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000134076
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029667]
[ENSMUST00000115300]
[ENSMUST00000173058]
[ENSMUST00000173404]
[ENSMUST00000174183]
|
AlphaFold |
Q9JK45 |
Predicted Effect |
probably null
Transcript: ENSMUST00000029667
AA Change: Y382*
|
SMART Domains |
Protein: ENSMUSP00000029667 Gene: ENSMUSG00000028033 AA Change: Y382*
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
36 |
N/A |
INTRINSIC |
low complexity region
|
52 |
82 |
N/A |
INTRINSIC |
transmembrane domain
|
128 |
150 |
N/A |
INTRINSIC |
Pfam:Ion_trans
|
163 |
347 |
1.7e-26 |
PFAM |
Pfam:Ion_trans_2
|
272 |
352 |
5.3e-15 |
PFAM |
Pfam:KCNQ_channel
|
446 |
648 |
3.6e-95 |
PFAM |
low complexity region
|
848 |
858 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000115299
|
Predicted Effect |
probably null
Transcript: ENSMUST00000115300
AA Change: Y382*
|
SMART Domains |
Protein: ENSMUSP00000110955 Gene: ENSMUSG00000028033 AA Change: Y382*
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
36 |
N/A |
INTRINSIC |
low complexity region
|
52 |
82 |
N/A |
INTRINSIC |
Pfam:Ion_trans
|
126 |
359 |
4.1e-28 |
PFAM |
Pfam:Ion_trans_2
|
272 |
352 |
3.3e-16 |
PFAM |
Pfam:KCNQ_channel
|
467 |
661 |
1.8e-98 |
PFAM |
low complexity region
|
867 |
877 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000173058
AA Change: Y382*
|
SMART Domains |
Protein: ENSMUSP00000134166 Gene: ENSMUSG00000028033 AA Change: Y382*
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
36 |
N/A |
INTRINSIC |
low complexity region
|
52 |
82 |
N/A |
INTRINSIC |
transmembrane domain
|
128 |
150 |
N/A |
INTRINSIC |
Pfam:Ion_trans
|
163 |
347 |
2e-26 |
PFAM |
Pfam:Ion_trans_2
|
272 |
352 |
3.1e-15 |
PFAM |
Pfam:KCNQ_channel
|
405 |
538 |
8e-64 |
PFAM |
low complexity region
|
738 |
748 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000173404
AA Change: Y382*
|
SMART Domains |
Protein: ENSMUSP00000134076 Gene: ENSMUSG00000028033 AA Change: Y382*
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
36 |
N/A |
INTRINSIC |
low complexity region
|
52 |
82 |
N/A |
INTRINSIC |
transmembrane domain
|
128 |
150 |
N/A |
INTRINSIC |
Pfam:Ion_trans
|
163 |
347 |
2.4e-26 |
PFAM |
Pfam:Ion_trans_2
|
272 |
352 |
3.6e-15 |
PFAM |
Pfam:KCNQ_channel
|
437 |
639 |
2e-95 |
PFAM |
low complexity region
|
839 |
849 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174183
|
SMART Domains |
Protein: ENSMUSP00000134389 Gene: ENSMUSG00000028033
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
36 |
N/A |
INTRINSIC |
low complexity region
|
52 |
82 |
N/A |
INTRINSIC |
transmembrane domain
|
126 |
148 |
N/A |
INTRINSIC |
|
Meta Mutation Damage Score |
0.9755 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.3%
- 20x: 95.1%
|
Validation Efficiency |
100% (38/38) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the KCNQ potassium channel gene family that is differentially expressed in subregions of the brain and in skeletal muscle. The protein encoded by this gene yields currents that activate slowly with depolarization and can form heteromeric channels with the protein encoded by the KCNQ3 gene. Currents expressed from this protein have voltage dependences and inhibitor sensitivities in common with M-currents. They are also inhibited by M1 muscarinic receptor activation. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2009] PHENOTYPE: Mice homozygous for a dominant negative knock-in mutation in this gene exhibit partial prenatal lethality and abnormal afterhyperpolarization in the in the CA3 area of hippocampus. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 37 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abca9 |
A |
G |
11: 110,035,712 (GRCm39) |
|
probably benign |
Het |
Bicdl2 |
G |
A |
17: 23,885,732 (GRCm39) |
|
probably null |
Het |
Cables1 |
A |
G |
18: 12,072,789 (GRCm39) |
D448G |
possibly damaging |
Het |
Casq2 |
A |
T |
3: 102,051,534 (GRCm39) |
N338I |
probably damaging |
Het |
Ccr1l1 |
T |
C |
9: 123,777,553 (GRCm39) |
N298S |
probably damaging |
Het |
Dnajc17 |
A |
G |
2: 119,009,933 (GRCm39) |
V231A |
probably benign |
Het |
Ell2 |
T |
C |
13: 75,911,904 (GRCm39) |
S397P |
probably damaging |
Het |
Gm9966 |
T |
C |
7: 95,607,753 (GRCm39) |
C25R |
unknown |
Het |
H2-DMa |
A |
G |
17: 34,356,121 (GRCm39) |
N41S |
probably damaging |
Het |
Helz2 |
A |
G |
2: 180,882,535 (GRCm39) |
M86T |
probably benign |
Het |
Il17rd |
T |
A |
14: 26,821,510 (GRCm39) |
I268N |
probably damaging |
Het |
Ipcef1 |
C |
T |
10: 6,850,641 (GRCm39) |
V317M |
probably damaging |
Het |
Itgae |
A |
T |
11: 73,031,513 (GRCm39) |
E1076D |
probably benign |
Het |
Kif21b |
G |
A |
1: 136,075,612 (GRCm39) |
|
probably benign |
Het |
Lilrb4a |
A |
T |
10: 51,367,709 (GRCm39) |
N84Y |
probably benign |
Het |
Mdga2 |
A |
G |
12: 66,553,044 (GRCm39) |
|
probably benign |
Het |
Naca |
T |
C |
10: 127,877,547 (GRCm39) |
|
probably benign |
Het |
Naif1 |
C |
T |
2: 32,344,887 (GRCm39) |
P197L |
probably benign |
Het |
Nrk |
T |
C |
X: 137,876,197 (GRCm39) |
L466P |
probably damaging |
Het |
Obscn |
T |
C |
11: 59,022,472 (GRCm39) |
R758G |
possibly damaging |
Het |
Pkn1 |
G |
A |
8: 84,407,867 (GRCm39) |
A421V |
probably benign |
Het |
Rusc2 |
A |
G |
4: 43,415,456 (GRCm39) |
Q254R |
probably benign |
Het |
Ryr1 |
G |
T |
7: 28,774,223 (GRCm39) |
R2404S |
probably damaging |
Het |
Selenon |
T |
C |
4: 134,270,380 (GRCm39) |
D324G |
probably null |
Het |
Serpinh1 |
T |
C |
7: 98,998,228 (GRCm39) |
Y134C |
probably damaging |
Het |
Serpini2 |
T |
C |
3: 75,166,921 (GRCm39) |
Y112C |
probably damaging |
Het |
Setx |
T |
G |
2: 29,038,637 (GRCm39) |
C1707W |
probably damaging |
Het |
Sit1 |
C |
T |
4: 43,483,314 (GRCm39) |
R50H |
possibly damaging |
Het |
Slc27a5 |
T |
A |
7: 12,723,487 (GRCm39) |
|
probably benign |
Het |
Slc5a4b |
C |
T |
10: 75,910,907 (GRCm39) |
V310M |
probably damaging |
Het |
Smc6 |
T |
C |
12: 11,326,294 (GRCm39) |
V97A |
probably damaging |
Het |
Ube2frt |
A |
G |
12: 36,140,574 (GRCm39) |
|
probably benign |
Het |
Usp42 |
T |
C |
5: 143,707,384 (GRCm39) |
|
probably benign |
Het |
Utrn |
A |
T |
10: 12,615,105 (GRCm39) |
|
probably null |
Het |
Vmn2r82 |
A |
G |
10: 79,232,082 (GRCm39) |
I694V |
probably benign |
Het |
Vmn2r-ps69 |
T |
C |
7: 84,956,832 (GRCm39) |
|
noncoding transcript |
Het |
Zfpm2 |
A |
G |
15: 40,965,719 (GRCm39) |
T603A |
probably benign |
Het |
|
Other mutations in Kcnq5 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00864:Kcnq5
|
APN |
1 |
21,575,987 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01603:Kcnq5
|
APN |
1 |
21,575,564 (GRCm39) |
missense |
possibly damaging |
0.94 |
IGL02326:Kcnq5
|
APN |
1 |
21,472,816 (GRCm39) |
missense |
probably benign |
0.17 |
IGL02624:Kcnq5
|
APN |
1 |
21,472,654 (GRCm39) |
missense |
probably benign |
0.27 |
IGL03151:Kcnq5
|
APN |
1 |
21,605,293 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03367:Kcnq5
|
APN |
1 |
21,473,289 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT1430001:Kcnq5
|
UTSW |
1 |
21,605,405 (GRCm39) |
missense |
probably damaging |
1.00 |
R0705:Kcnq5
|
UTSW |
1 |
21,605,401 (GRCm39) |
missense |
probably damaging |
1.00 |
R0798:Kcnq5
|
UTSW |
1 |
22,031,399 (GRCm39) |
splice site |
probably null |
|
R1263:Kcnq5
|
UTSW |
1 |
21,549,602 (GRCm39) |
missense |
probably damaging |
1.00 |
R1445:Kcnq5
|
UTSW |
1 |
21,475,248 (GRCm39) |
missense |
probably benign |
0.01 |
R1465:Kcnq5
|
UTSW |
1 |
21,539,692 (GRCm39) |
critical splice donor site |
probably null |
|
R1465:Kcnq5
|
UTSW |
1 |
21,539,692 (GRCm39) |
critical splice donor site |
probably null |
|
R1497:Kcnq5
|
UTSW |
1 |
21,472,610 (GRCm39) |
missense |
possibly damaging |
0.82 |
R1515:Kcnq5
|
UTSW |
1 |
21,472,905 (GRCm39) |
missense |
probably benign |
0.01 |
R1610:Kcnq5
|
UTSW |
1 |
21,527,685 (GRCm39) |
missense |
probably damaging |
1.00 |
R1835:Kcnq5
|
UTSW |
1 |
21,536,611 (GRCm39) |
missense |
probably benign |
0.04 |
R1999:Kcnq5
|
UTSW |
1 |
21,472,428 (GRCm39) |
missense |
probably null |
0.18 |
R2060:Kcnq5
|
UTSW |
1 |
21,531,821 (GRCm39) |
missense |
probably benign |
0.06 |
R2145:Kcnq5
|
UTSW |
1 |
21,575,573 (GRCm39) |
missense |
probably damaging |
0.96 |
R2314:Kcnq5
|
UTSW |
1 |
21,549,595 (GRCm39) |
splice site |
probably null |
|
R2511:Kcnq5
|
UTSW |
1 |
21,576,006 (GRCm39) |
nonsense |
probably null |
|
R2697:Kcnq5
|
UTSW |
1 |
21,549,656 (GRCm39) |
missense |
probably damaging |
1.00 |
R2889:Kcnq5
|
UTSW |
1 |
21,472,526 (GRCm39) |
missense |
probably damaging |
0.98 |
R4176:Kcnq5
|
UTSW |
1 |
21,605,392 (GRCm39) |
missense |
probably damaging |
1.00 |
R4609:Kcnq5
|
UTSW |
1 |
21,475,292 (GRCm39) |
splice site |
probably null |
|
R4720:Kcnq5
|
UTSW |
1 |
21,473,274 (GRCm39) |
missense |
probably damaging |
0.96 |
R4904:Kcnq5
|
UTSW |
1 |
21,494,324 (GRCm39) |
missense |
probably damaging |
0.98 |
R5184:Kcnq5
|
UTSW |
1 |
21,472,711 (GRCm39) |
missense |
probably damaging |
1.00 |
R5268:Kcnq5
|
UTSW |
1 |
21,575,949 (GRCm39) |
missense |
probably damaging |
1.00 |
R5373:Kcnq5
|
UTSW |
1 |
22,031,795 (GRCm39) |
missense |
unknown |
|
R5397:Kcnq5
|
UTSW |
1 |
21,476,080 (GRCm39) |
missense |
probably damaging |
1.00 |
R5473:Kcnq5
|
UTSW |
1 |
21,527,626 (GRCm39) |
critical splice donor site |
probably null |
|
R5490:Kcnq5
|
UTSW |
1 |
21,549,692 (GRCm39) |
missense |
probably damaging |
1.00 |
R5946:Kcnq5
|
UTSW |
1 |
21,575,931 (GRCm39) |
missense |
probably damaging |
1.00 |
R6941:Kcnq5
|
UTSW |
1 |
21,476,068 (GRCm39) |
missense |
probably damaging |
1.00 |
R6962:Kcnq5
|
UTSW |
1 |
21,576,017 (GRCm39) |
missense |
probably damaging |
1.00 |
R7201:Kcnq5
|
UTSW |
1 |
21,473,099 (GRCm39) |
missense |
possibly damaging |
0.93 |
R7238:Kcnq5
|
UTSW |
1 |
21,472,526 (GRCm39) |
missense |
probably benign |
0.39 |
R7375:Kcnq5
|
UTSW |
1 |
21,539,710 (GRCm39) |
missense |
possibly damaging |
0.82 |
R7584:Kcnq5
|
UTSW |
1 |
21,472,545 (GRCm39) |
missense |
probably benign |
|
R7780:Kcnq5
|
UTSW |
1 |
22,031,555 (GRCm39) |
missense |
probably benign |
0.43 |
R8043:Kcnq5
|
UTSW |
1 |
21,549,644 (GRCm39) |
missense |
probably damaging |
1.00 |
R8103:Kcnq5
|
UTSW |
1 |
21,549,620 (GRCm39) |
missense |
possibly damaging |
0.89 |
R8267:Kcnq5
|
UTSW |
1 |
21,575,609 (GRCm39) |
missense |
probably damaging |
1.00 |
R8363:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8364:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8370:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8371:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8372:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8374:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8414:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8528:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8542:Kcnq5
|
UTSW |
1 |
21,549,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R8669:Kcnq5
|
UTSW |
1 |
21,476,050 (GRCm39) |
missense |
probably damaging |
1.00 |
R8723:Kcnq5
|
UTSW |
1 |
21,575,591 (GRCm39) |
missense |
probably damaging |
1.00 |
R9000:Kcnq5
|
UTSW |
1 |
21,557,483 (GRCm39) |
missense |
probably damaging |
1.00 |
R9020:Kcnq5
|
UTSW |
1 |
21,539,463 (GRCm39) |
intron |
probably benign |
|
R9152:Kcnq5
|
UTSW |
1 |
21,539,692 (GRCm39) |
critical splice donor site |
probably null |
|
R9426:Kcnq5
|
UTSW |
1 |
21,473,118 (GRCm39) |
missense |
probably benign |
|
Z1088:Kcnq5
|
UTSW |
1 |
21,527,753 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- AGTCCCAGAGTGAGACTTCTG -3'
(R):5'- TGTCTCATTGTCGAACACTTTGG -3'
Sequencing Primer
(F):5'- GTGAGACTTCTGCACACATATGG -3'
(R):5'- GACGTGTGTAACTACCCACTG -3'
|
Posted On |
2015-01-23 |