Mutagenetix > Incidental Mutation

Incidental Mutation 'R3624:Vmn1r88'

269317

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r88

Ensembl Gene

ENSMUSG00000095902

Gene Name

vomeronasal 1 receptor, 88

Synonyms

MMRRC Submission

040678-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R3624 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

12911646-12912596 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 12911790 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 49 (M49L)

Ref Sequence

ENSEMBL: ENSMUSP00000128946 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000171783]

AlphaFold

no structure available at present

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000122190

Predicted Effect

probably benign
Transcript: ENSMUST00000171783
AA Change: M49L

PolyPhen 2 Score 0.075 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000128946
Gene: ENSMUSG00000095902
AA Change: M49L

Domain	Start	End	E-Value	Type
Pfam:TAS2R	1	306	2e-14	PFAM
Pfam:V1R	35	301	1.4e-30	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy1	A	G	11: 7,080,348 (GRCm39)	T364A	probably benign	Het
Adcy2	T	C	13: 68,790,650 (GRCm39)	T905A	probably damaging	Het
Akap9	C	A	5: 4,026,235 (GRCm39)	Q1297K	possibly damaging	Het
Ankrd53	A	G	6: 83,740,244 (GRCm39)	E104G	possibly damaging	Het
Anks1	T	C	17: 28,205,262 (GRCm39)	F274L	probably damaging	Het
Btaf1	A	G	19: 36,958,486 (GRCm39)	T668A	probably benign	Het
Coch	A	G	12: 51,649,609 (GRCm39)	I307V	probably benign	Het
Colec11	T	C	12: 28,644,907 (GRCm39)	M196V	probably benign	Het
Cyp2c54	A	G	19: 40,058,688 (GRCm39)	I248T	probably benign	Het
D17H6S53E	A	G	17: 35,346,512 (GRCm39)	E141G	probably benign	Het
Dffb	T	C	4: 154,049,976 (GRCm39)	T296A	probably damaging	Het
Dock8	A	G	19: 25,057,241 (GRCm39)	Q216R	probably benign	Het
Elp1	C	T	4: 56,798,708 (GRCm39)	V85M	possibly damaging	Het
Emilin3	T	C	2: 160,750,177 (GRCm39)	D477G	possibly damaging	Het
Esp4	A	G	17: 40,913,484 (GRCm39)	K117R	unknown	Het
Fam186b	A	G	15: 99,178,396 (GRCm39)	L310S	probably benign	Het
Fpr-rs4	CAGGAA	CA	17: 18,242,596 (GRCm39)		probably null	Het
H2-T3	T	C	17: 36,500,957 (GRCm39)	T20A	possibly damaging	Het
Htr1d	T	C	4: 136,170,815 (GRCm39)	I348T	probably damaging	Het
Hyal4	A	T	6: 24,765,737 (GRCm39)	S364C	probably damaging	Het
Igkv1-133	A	T	6: 67,701,944 (GRCm39)	Q16L	probably benign	Het
Irs2	C	T	8: 11,057,643 (GRCm39)	G263D	probably damaging	Het
Itih3	A	G	14: 30,636,700 (GRCm39)	Y38H	probably damaging	Het
Kif21a	A	G	15: 90,849,798 (GRCm39)	V35A	probably damaging	Het
Klhl14	A	T	18: 21,690,953 (GRCm39)	V499D	probably damaging	Het
Kmt2d	T	C	15: 98,740,783 (GRCm39)		probably benign	Het
Loxl4	A	G	19: 42,596,015 (GRCm39)	V146A	probably benign	Het
Met	A	T	6: 17,549,085 (GRCm39)	D979V	probably damaging	Het
Mga	A	G	2: 119,772,245 (GRCm39)	T1702A	probably damaging	Het
Midn	A	G	10: 79,986,144 (GRCm39)	D78G	probably benign	Het
Mlh3	C	T	12: 85,315,169 (GRCm39)	C339Y	probably damaging	Het
Mog	T	C	17: 37,323,338 (GRCm39)	H200R	possibly damaging	Het
Nadk2	T	A	15: 9,084,303 (GRCm39)	W139R	probably damaging	Het
Nsd3	A	G	8: 26,152,835 (GRCm39)	T392A	probably damaging	Het
Pbld2	T	C	10: 62,897,470 (GRCm39)	L57P	probably damaging	Het
Racgap1	T	A	15: 99,540,772 (GRCm39)	N26I	probably damaging	Het
Rsf1	ATGGCG	ATGGCGACGGTGGCG	7: 97,229,111 (GRCm39)		probably benign	Het
Rspry1	A	G	8: 95,376,405 (GRCm39)	D309G	probably damaging	Het
Sgcz	T	C	8: 38,420,201 (GRCm39)	E17G	probably damaging	Het
Slc16a10	A	G	10: 40,017,890 (GRCm39)	V48A	probably benign	Het
Smad1	A	G	8: 80,066,327 (GRCm39)	V450A	probably benign	Het
Smad9	C	T	3: 54,696,705 (GRCm39)	R257W	probably damaging	Het
Snrpb	C	A	2: 130,017,299 (GRCm39)	R73L	probably null	Het
Spag11a	A	G	8: 19,209,417 (GRCm39)	D69G	probably benign	Het
Sptbn1	T	C	11: 30,090,593 (GRCm39)	H559R	probably damaging	Het
Strn3	T	C	12: 51,707,999 (GRCm39)	Y132C	possibly damaging	Het
Tasor2	T	C	13: 3,645,556 (GRCm39)	T98A	probably benign	Het
Tgm6	T	A	2: 129,993,681 (GRCm39)	V640E	possibly damaging	Het
Trim54	G	A	5: 31,294,320 (GRCm39)	V319M	possibly damaging	Het
Trpm1	A	G	7: 63,894,601 (GRCm39)	Y951C	probably damaging	Het
Ube3a	T	A	7: 58,921,860 (GRCm39)	N77K	probably damaging	Het
Uhrf1	C	T	17: 56,624,023 (GRCm39)	T482I	probably damaging	Het
Veph1	C	T	3: 66,122,858 (GRCm39)	V224I	probably benign	Het
Vmn1r30	A	T	6: 58,412,437 (GRCm39)	F132I	probably benign	Het
Vmn2r24	A	G	6: 123,792,997 (GRCm39)	R775G	probably damaging	Het
Zfp60	T	A	7: 27,448,753 (GRCm39)	F474I	probably benign	Het
Zkscan8	C	T	13: 21,704,946 (GRCm39)	R259Q	probably damaging	Het

Other mutations in Vmn1r88

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01828:Vmn1r88	APN	7	12,911,662 (GRCm39)	missense	probably damaging	1.00
IGL01879:Vmn1r88	APN	7	12,912,229 (GRCm39)	missense	probably benign	0.12
IGL02028:Vmn1r88	APN	7	12,911,719 (GRCm39)	missense	probably benign
IGL02586:Vmn1r88	APN	7	12,911,735 (GRCm39)	nonsense	probably null
IGL03176:Vmn1r88	APN	7	12,911,779 (GRCm39)	missense	probably damaging	1.00
PIT4466001:Vmn1r88	UTSW	7	12,912,403 (GRCm39)	missense	possibly damaging	0.83
R1163:Vmn1r88	UTSW	7	12,912,060 (GRCm39)	missense	probably benign
R1478:Vmn1r88	UTSW	7	12,911,878 (GRCm39)	missense	probably damaging	1.00
R2376:Vmn1r88	UTSW	7	12,911,785 (GRCm39)	missense	probably damaging	0.99
R4543:Vmn1r88	UTSW	7	12,911,907 (GRCm39)	missense	possibly damaging	0.52
R4593:Vmn1r88	UTSW	7	12,911,769 (GRCm39)	missense	probably damaging	0.96
R4721:Vmn1r88	UTSW	7	12,912,451 (GRCm39)	nonsense	probably null
R5927:Vmn1r88	UTSW	7	12,912,440 (GRCm39)	missense	probably benign	0.12
R6411:Vmn1r88	UTSW	7	12,911,970 (GRCm39)	missense	probably damaging	1.00
R6535:Vmn1r88	UTSW	7	12,912,112 (GRCm39)	missense	probably benign	0.03
R6598:Vmn1r88	UTSW	7	12,912,150 (GRCm39)	missense	probably damaging	1.00
R6857:Vmn1r88	UTSW	7	12,912,258 (GRCm39)	missense	possibly damaging	0.87
R9389:Vmn1r88	UTSW	7	12,912,546 (GRCm39)	missense	probably damaging	1.00
R9769:Vmn1r88	UTSW	7	12,912,280 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TGCTCCTGAGATGTCAATCAG -3'
(R):5'- GCTTAGAACAGAGGTGGTGC -3'

Sequencing Primer
(F):5'- TTAGTACTCTAGACCTAACCAACCTG -3'
(R):5'- TGGTGCAGATGGACAGACCC -3'

Posted On

2015-02-19