Incidental Mutation 'R4541:Ddhd1'
| ID |
333550 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ddhd1
|
| Ensembl Gene |
ENSMUSG00000037697 |
| Gene Name |
DDHD domain containing 1 |
| Synonyms |
4921528E07Rik, 9630061G18Rik |
| MMRRC Submission |
041777-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R4541 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
14 |
| Chromosomal Location |
45830628-45895600 bp(-) (GRCm39) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
G to A
at 45860313 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Stop codon
at position 140
(R140*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000154065
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000051310]
[ENSMUST00000087320]
[ENSMUST00000111828]
[ENSMUST00000149286]
[ENSMUST00000226301]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000051310
|
| SMART Domains |
Protein: ENSMUSP00000050088
Gene: ENSMUSG00000037697
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
28 |
39 |
N/A |
INTRINSIC |
|
low complexity region
|
95 |
111 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
141 |
N/A |
INTRINSIC |
|
low complexity region
|
183 |
201 |
N/A |
INTRINSIC |
|
low complexity region
|
206 |
217 |
N/A |
INTRINSIC |
|
low complexity region
|
284 |
297 |
N/A |
INTRINSIC |
|
Blast:DDHD
|
450 |
573 |
6e-67 |
BLAST |
|
DDHD
|
595 |
842 |
1.49e-100 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000087320
AA Change: R351*
|
| SMART Domains |
Protein: ENSMUSP00000084577
Gene: ENSMUSG00000037697
AA Change: R351*
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
28 |
39 |
N/A |
INTRINSIC |
|
low complexity region
|
95 |
111 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
141 |
N/A |
INTRINSIC |
|
low complexity region
|
183 |
201 |
N/A |
INTRINSIC |
|
low complexity region
|
206 |
217 |
N/A |
INTRINSIC |
|
low complexity region
|
284 |
297 |
N/A |
INTRINSIC |
|
Blast:DDHD
|
484 |
607 |
1e-66 |
BLAST |
|
DDHD
|
629 |
904 |
3.75e-106 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000111828
|
| SMART Domains |
Protein: ENSMUSP00000107459
Gene: ENSMUSG00000037697
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
28 |
39 |
N/A |
INTRINSIC |
|
low complexity region
|
95 |
111 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
141 |
N/A |
INTRINSIC |
|
low complexity region
|
183 |
201 |
N/A |
INTRINSIC |
|
low complexity region
|
206 |
217 |
N/A |
INTRINSIC |
|
low complexity region
|
284 |
297 |
N/A |
INTRINSIC |
|
Blast:DDHD
|
450 |
573 |
8e-67 |
BLAST |
|
DDHD
|
595 |
870 |
3.75e-106 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000129599
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000141487
|
| SMART Domains |
Protein: ENSMUSP00000133358
Gene: ENSMUSG00000037697
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:DDHD
|
111 |
149 |
1e-17 |
BLAST |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147551
|
| Predicted Effect |
silent
Transcript: ENSMUST00000149286
|
| SMART Domains |
Protein: ENSMUSP00000118848
Gene: ENSMUSG00000037697
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
28 |
39 |
N/A |
INTRINSIC |
|
low complexity region
|
95 |
111 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
141 |
N/A |
INTRINSIC |
|
low complexity region
|
183 |
201 |
N/A |
INTRINSIC |
|
low complexity region
|
206 |
217 |
N/A |
INTRINSIC |
|
low complexity region
|
284 |
297 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152110
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000226301
AA Change: R140*
|
| Meta Mutation Damage Score |
0.9755 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.0%
- 20x: 94.5%
|
| Validation Efficiency |
96% (51/53) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the intracellular phospholipase A1 gene family. The protein encoded by this gene preferentially hydrolyzes phosphatidic acid. It is a cytosolic protein with some mitochondrial localization, and is thought to be involved in the regulation of mitochondrial dynamics. Overexpression of this gene causes fragmentation of the tubular structures in mitochondria, while depletion of the gene results in mitochondrial tubule elongation. Deletion of this gene in male mice caused fertility defects, resulting from disruption in the organization of the mitochondria during spermiogenesis. In humans, mutations in this gene have been associated with hereditary spastic paraplegia (HSP), also known as Strumpell-Lorrain disease, or, familial spastic paraparesis (FSP). This inherited disorder is characterized by progressive weakness and spasticity of the legs. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Aug 2015]
PHENOTYPE: Mice homozygous for a null allele show reduced testis weight, oligozoospermia, teratozoospermia, and male subfertility. Sperm defects include a disorganized mitochondrial structure, an abnormal gap between the middle and principal pieces, and hairpin flagellum leading to impaired sperm motility. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 44 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2810021J22Rik |
C |
T |
11: 58,769,676 (GRCm39) |
P73S |
probably benign |
Het |
| 4930533L02Rik |
G |
A |
7: 124,917,750 (GRCm39) |
|
noncoding transcript |
Het |
| Acot4 |
A |
T |
12: 84,090,022 (GRCm39) |
I240F |
probably benign |
Het |
| B4galt6 |
A |
G |
18: 20,878,496 (GRCm39) |
V10A |
probably benign |
Het |
| Bag4 |
C |
T |
8: 26,259,516 (GRCm39) |
A228T |
probably benign |
Het |
| Ccnb3 |
T |
C |
X: 6,875,308 (GRCm39) |
T424A |
probably benign |
Het |
| Cd8a |
A |
T |
6: 71,350,856 (GRCm39) |
D107V |
probably benign |
Het |
| Cdca7l |
T |
C |
12: 117,836,098 (GRCm39) |
S190P |
probably damaging |
Het |
| Ceacam12 |
G |
A |
7: 17,805,648 (GRCm39) |
M278I |
probably benign |
Het |
| Cfap43 |
C |
T |
19: 47,736,454 (GRCm39) |
V1346I |
probably benign |
Het |
| Clic5 |
C |
T |
17: 44,552,956 (GRCm39) |
T70M |
probably damaging |
Het |
| Dbpht2 |
A |
T |
12: 74,345,934 (GRCm39) |
|
noncoding transcript |
Het |
| Evpl |
T |
G |
11: 116,123,470 (GRCm39) |
I301L |
probably benign |
Het |
| Glul |
T |
A |
1: 153,778,782 (GRCm39) |
Y30* |
probably null |
Het |
| Itgad |
A |
T |
7: 127,797,287 (GRCm39) |
H878L |
probably benign |
Het |
| Kcnk10 |
A |
G |
12: 98,402,536 (GRCm39) |
I301T |
probably damaging |
Het |
| Klhl14 |
A |
T |
18: 21,687,696 (GRCm39) |
Y575* |
probably null |
Het |
| Mrps2 |
G |
T |
2: 28,358,412 (GRCm39) |
|
probably benign |
Het |
| Mymx |
GCC |
GC |
17: 45,912,519 (GRCm39) |
|
probably null |
Het |
| Napb |
G |
A |
2: 148,551,229 (GRCm39) |
|
probably benign |
Het |
| Nlrp1c-ps |
A |
G |
11: 71,171,706 (GRCm39) |
|
noncoding transcript |
Het |
| Or10g9b |
A |
C |
9: 39,917,589 (GRCm39) |
S219A |
possibly damaging |
Het |
| Or4f15 |
A |
G |
2: 111,813,981 (GRCm39) |
I146T |
probably benign |
Het |
| Piwil4 |
C |
A |
9: 14,629,612 (GRCm39) |
M438I |
probably damaging |
Het |
| Pla2r1 |
C |
T |
2: 60,258,082 (GRCm39) |
D1199N |
probably damaging |
Het |
| Pmpca |
T |
G |
2: 26,280,201 (GRCm39) |
|
probably benign |
Het |
| Prkcq |
G |
T |
2: 11,288,623 (GRCm39) |
M525I |
possibly damaging |
Het |
| Rnf225 |
T |
C |
7: 12,662,520 (GRCm39) |
|
probably null |
Het |
| Sco1 |
G |
T |
11: 66,943,668 (GRCm39) |
A50S |
probably benign |
Het |
| Slc12a2 |
T |
A |
18: 58,046,037 (GRCm39) |
|
probably null |
Het |
| Slc36a1 |
T |
C |
11: 55,112,849 (GRCm39) |
V148A |
probably benign |
Het |
| Sost |
G |
A |
11: 101,857,670 (GRCm39) |
P44S |
probably damaging |
Het |
| Tbc1d10c |
G |
T |
19: 4,239,473 (GRCm39) |
R96S |
probably damaging |
Het |
| Tbc1d2b |
A |
T |
9: 90,087,222 (GRCm39) |
I919N |
probably damaging |
Het |
| Tcea1 |
T |
C |
1: 4,963,659 (GRCm39) |
L233P |
probably damaging |
Het |
| Tlcd4 |
A |
G |
3: 121,028,884 (GRCm39) |
M1T |
probably null |
Het |
| Tmem231 |
T |
C |
8: 112,641,224 (GRCm39) |
T223A |
probably benign |
Het |
| Tns2 |
C |
T |
15: 102,017,369 (GRCm39) |
R281C |
probably damaging |
Het |
| Tomm34 |
A |
G |
2: 163,896,719 (GRCm39) |
Y243H |
probably benign |
Het |
| Tubgcp4 |
A |
T |
2: 121,025,907 (GRCm39) |
N584I |
probably benign |
Het |
| Vldlr |
T |
C |
19: 27,216,192 (GRCm39) |
C7R |
probably damaging |
Het |
| Vmn1r42 |
A |
T |
6: 89,822,533 (GRCm39) |
M12K |
probably benign |
Het |
| Vsig10 |
C |
T |
5: 117,490,881 (GRCm39) |
|
probably benign |
Het |
| Zfp974 |
C |
G |
7: 27,625,829 (GRCm39) |
V14L |
probably damaging |
Het |
|
| Other mutations in Ddhd1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01318:Ddhd1
|
APN |
14 |
45,854,008 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01635:Ddhd1
|
APN |
14 |
45,867,037 (GRCm39) |
missense |
probably null |
0.98 |
|
IGL02176:Ddhd1
|
APN |
14 |
45,854,057 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02698:Ddhd1
|
APN |
14 |
45,842,663 (GRCm39) |
unclassified |
probably benign |
|
|
IGL03052:Ddhd1
|
UTSW |
14 |
45,858,240 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4434001:Ddhd1
|
UTSW |
14 |
45,848,062 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R0037:Ddhd1
|
UTSW |
14 |
45,847,967 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0105:Ddhd1
|
UTSW |
14 |
45,848,147 (GRCm39) |
missense |
probably benign |
0.37 |
|
R0165:Ddhd1
|
UTSW |
14 |
45,833,049 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1237:Ddhd1
|
UTSW |
14 |
45,839,107 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1401:Ddhd1
|
UTSW |
14 |
45,842,508 (GRCm39) |
critical splice donor site |
probably null |
|
|
R1574:Ddhd1
|
UTSW |
14 |
45,833,004 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1574:Ddhd1
|
UTSW |
14 |
45,833,004 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1582:Ddhd1
|
UTSW |
14 |
45,842,566 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2070:Ddhd1
|
UTSW |
14 |
45,848,081 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2307:Ddhd1
|
UTSW |
14 |
45,846,447 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2417:Ddhd1
|
UTSW |
14 |
45,894,729 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3756:Ddhd1
|
UTSW |
14 |
45,894,720 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3756:Ddhd1
|
UTSW |
14 |
45,848,030 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4737:Ddhd1
|
UTSW |
14 |
45,866,278 (GRCm39) |
intron |
probably benign |
|
|
R5105:Ddhd1
|
UTSW |
14 |
45,894,864 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5810:Ddhd1
|
UTSW |
14 |
45,840,164 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5898:Ddhd1
|
UTSW |
14 |
45,840,125 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6217:Ddhd1
|
UTSW |
14 |
45,856,971 (GRCm39) |
splice site |
probably null |
|
|
R6218:Ddhd1
|
UTSW |
14 |
45,851,633 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6671:Ddhd1
|
UTSW |
14 |
45,894,689 (GRCm39) |
frame shift |
probably null |
|
|
R6787:Ddhd1
|
UTSW |
14 |
45,894,976 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7049:Ddhd1
|
UTSW |
14 |
45,840,138 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7150:Ddhd1
|
UTSW |
14 |
45,895,263 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7213:Ddhd1
|
UTSW |
14 |
45,895,210 (GRCm39) |
missense |
probably benign |
0.41 |
|
R7261:Ddhd1
|
UTSW |
14 |
45,894,688 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7522:Ddhd1
|
UTSW |
14 |
45,895,104 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R7920:Ddhd1
|
UTSW |
14 |
45,894,927 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R8736:Ddhd1
|
UTSW |
14 |
45,836,642 (GRCm39) |
missense |
probably benign |
0.30 |
|
R8880:Ddhd1
|
UTSW |
14 |
45,846,430 (GRCm39) |
missense |
probably benign |
|
|
R9140:Ddhd1
|
UTSW |
14 |
45,894,918 (GRCm39) |
missense |
probably benign |
0.12 |
|
R9393:Ddhd1
|
UTSW |
14 |
45,894,685 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9398:Ddhd1
|
UTSW |
14 |
45,895,117 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R9399:Ddhd1
|
UTSW |
14 |
45,895,117 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R9502:Ddhd1
|
UTSW |
14 |
45,894,679 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R9687:Ddhd1
|
UTSW |
14 |
45,848,190 (GRCm39) |
missense |
probably damaging |
0.97 |
|
Z1177:Ddhd1
|
UTSW |
14 |
45,895,051 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCAAAACTCTGTTCCTCTGCAAAC -3'
(R):5'- AGTGCAGTTTCTAAAAGTTAGGGC -3'
Sequencing Primer
(F):5'- CCTCTGCAAACCAGTTATATATAGTC -3'
(R):5'- GTTTCTAAAAGTTAGGGCTAAAAGGC -3'
|
| Posted On |
2015-08-18 |
Incidental Mutation