Incidental Mutation 'R0501:Kcnma1'
| ID |
47155 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Kcnma1
|
| Ensembl Gene |
ENSMUSG00000063142 |
| Gene Name |
potassium large conductance calcium-activated channel, subfamily M, alpha member 1 |
| Synonyms |
MaxiK, BKCa, 5730414M22Rik, BK channel alpha subunit, Slo, Slo1, mSlo1 |
| MMRRC Submission |
038696-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.856)
|
| Stock # |
R0501 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
14 |
| Chromosomal Location |
23342356-24055173 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 23361784 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Valine
at position 1074
(M1074V)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000153214
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000065788]
[ENSMUST00000074983]
[ENSMUST00000100831]
[ENSMUST00000112423]
[ENSMUST00000145596]
[ENSMUST00000163322]
[ENSMUST00000172099]
[ENSMUST00000177634]
[ENSMUST00000188285]
[ENSMUST00000190044]
[ENSMUST00000179836]
[ENSMUST00000179097]
[ENSMUST00000188210]
[ENSMUST00000188991]
[ENSMUST00000224232]
[ENSMUST00000224077]
[ENSMUST00000223655]
[ENSMUST00000223727]
[ENSMUST00000223749]
[ENSMUST00000190985]
[ENSMUST00000225471]
[ENSMUST00000224812]
[ENSMUST00000225556]
[ENSMUST00000224468]
[ENSMUST00000225431]
[ENSMUST00000225315]
[ENSMUST00000224787]
[ENSMUST00000224285]
[ENSMUST00000225794]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000065788
AA Change: M952V
PolyPhen 2
Score 0.095 (Sensitivity: 0.93; Specificity: 0.85)
|
| SMART Domains |
Protein: ENSMUSP00000065293
Gene: ENSMUSG00000063142
AA Change: M952V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
transmembrane domain
|
54 |
73 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
91 |
262 |
2.2e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
180 |
268 |
5.7e-16 |
PFAM |
|
Pfam:TrkA_N
|
314 |
413 |
7.5e-7 |
PFAM |
|
Pfam:BK_channel_a
|
411 |
509 |
6.4e-31 |
PFAM |
|
low complexity region
|
835 |
843 |
N/A |
INTRINSIC |
|
low complexity region
|
891 |
902 |
N/A |
INTRINSIC |
|
low complexity region
|
1005 |
1031 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000074983
AA Change: M1011V
PolyPhen 2
Score 0.052 (Sensitivity: 0.94; Specificity: 0.83)
|
| SMART Domains |
Protein: ENSMUSP00000074511
Gene: ENSMUSG00000063142
AA Change: M1011V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
transmembrane domain
|
54 |
73 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
91 |
262 |
2.2e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
180 |
268 |
5.7e-16 |
PFAM |
|
Pfam:TrkA_N
|
314 |
413 |
7.5e-7 |
PFAM |
|
Pfam:BK_channel_a
|
411 |
509 |
6.4e-31 |
PFAM |
|
low complexity region
|
894 |
902 |
N/A |
INTRINSIC |
|
low complexity region
|
950 |
961 |
N/A |
INTRINSIC |
|
low complexity region
|
1064 |
1090 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000100831
AA Change: M982V
PolyPhen 2
Score 0.528 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000098393
Gene: ENSMUSG00000063142
AA Change: M982V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
transmembrane domain
|
54 |
73 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
91 |
262 |
2.1e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
180 |
268 |
5.5e-16 |
PFAM |
|
Pfam:TrkA_N
|
314 |
413 |
7.3e-7 |
PFAM |
|
Pfam:BK_channel_a
|
411 |
509 |
6.2e-31 |
PFAM |
|
low complexity region
|
865 |
873 |
N/A |
INTRINSIC |
|
low complexity region
|
921 |
932 |
N/A |
INTRINSIC |
|
low complexity region
|
1035 |
1061 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112423
AA Change: M898V
PolyPhen 2
Score 0.095 (Sensitivity: 0.93; Specificity: 0.85)
|
| SMART Domains |
Protein: ENSMUSP00000108042
Gene: ENSMUSG00000063142
AA Change: M898V
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
2 |
19 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
37 |
208 |
2.1e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
126 |
214 |
5.3e-16 |
PFAM |
|
Pfam:TrkA_N
|
260 |
359 |
7e-7 |
PFAM |
|
Pfam:BK_channel_a
|
357 |
455 |
6e-31 |
PFAM |
|
low complexity region
|
781 |
789 |
N/A |
INTRINSIC |
|
low complexity region
|
837 |
848 |
N/A |
INTRINSIC |
|
low complexity region
|
951 |
977 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000145596
AA Change: M1105V
PolyPhen 2
Score 0.253 (Sensitivity: 0.91; Specificity: 0.88)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000163322
AA Change: M949V
PolyPhen 2
Score 0.035 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000128553
Gene: ENSMUSG00000063142
AA Change: M949V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
transmembrane domain
|
54 |
73 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
91 |
262 |
3.2e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
180 |
268 |
1.1e-15 |
PFAM |
|
Pfam:TrkA_N
|
314 |
413 |
7e-7 |
PFAM |
|
Pfam:BK_channel_a
|
411 |
509 |
6e-31 |
PFAM |
|
low complexity region
|
832 |
840 |
N/A |
INTRINSIC |
|
low complexity region
|
888 |
899 |
N/A |
INTRINSIC |
|
low complexity region
|
1002 |
1028 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000172099
AA Change: M1014V
PolyPhen 2
Score 0.328 (Sensitivity: 0.90; Specificity: 0.89)
|
| SMART Domains |
Protein: ENSMUSP00000132204
Gene: ENSMUSG00000063142
AA Change: M1014V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
transmembrane domain
|
54 |
73 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
91 |
262 |
2.2e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
180 |
268 |
5.7e-16 |
PFAM |
|
Pfam:TrkA_N
|
314 |
413 |
7.6e-7 |
PFAM |
|
Pfam:BK_channel_a
|
411 |
509 |
6.5e-31 |
PFAM |
|
low complexity region
|
897 |
905 |
N/A |
INTRINSIC |
|
low complexity region
|
953 |
964 |
N/A |
INTRINSIC |
|
low complexity region
|
1067 |
1093 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000177634
AA Change: M979V
PolyPhen 2
Score 0.164 (Sensitivity: 0.92; Specificity: 0.87)
|
| SMART Domains |
Protein: ENSMUSP00000136447
Gene: ENSMUSG00000063142
AA Change: M979V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
53 |
272 |
4.9e-19 |
PFAM |
|
Pfam:Ion_trans_2
|
180 |
267 |
1.2e-15 |
PFAM |
|
Pfam:BK_channel_a
|
413 |
508 |
1.2e-35 |
PFAM |
|
low complexity region
|
862 |
870 |
N/A |
INTRINSIC |
|
low complexity region
|
918 |
929 |
N/A |
INTRINSIC |
|
low complexity region
|
1032 |
1058 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000188285
AA Change: M1136V
PolyPhen 2
Score 0.159 (Sensitivity: 0.92; Specificity: 0.87)
|
| SMART Domains |
Protein: ENSMUSP00000140275
Gene: ENSMUSG00000063142
AA Change: M1136V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
23 |
N/A |
INTRINSIC |
|
transmembrane domain
|
86 |
108 |
N/A |
INTRINSIC |
|
low complexity region
|
145 |
156 |
N/A |
INTRINSIC |
|
transmembrane domain
|
179 |
198 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
216 |
387 |
1.3e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
305 |
393 |
5.4e-16 |
PFAM |
|
Pfam:TrkA_N
|
439 |
538 |
8e-7 |
PFAM |
|
Pfam:BK_channel_a
|
536 |
634 |
5.2e-31 |
PFAM |
|
low complexity region
|
1019 |
1027 |
N/A |
INTRINSIC |
|
low complexity region
|
1075 |
1086 |
N/A |
INTRINSIC |
|
low complexity region
|
1189 |
1215 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000190044
AA Change: M1074V
PolyPhen 2
Score 0.332 (Sensitivity: 0.90; Specificity: 0.89)
|
| SMART Domains |
Protein: ENSMUSP00000140033
Gene: ENSMUSG00000063142
AA Change: M1074V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
23 |
N/A |
INTRINSIC |
|
transmembrane domain
|
86 |
108 |
N/A |
INTRINSIC |
|
low complexity region
|
145 |
156 |
N/A |
INTRINSIC |
|
transmembrane domain
|
179 |
198 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
216 |
387 |
1.3e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
305 |
393 |
5.1e-16 |
PFAM |
|
Pfam:TrkA_N
|
439 |
538 |
7.5e-7 |
PFAM |
|
Pfam:BK_channel_a
|
536 |
634 |
4.9e-31 |
PFAM |
|
low complexity region
|
957 |
965 |
N/A |
INTRINSIC |
|
low complexity region
|
1013 |
1024 |
N/A |
INTRINSIC |
|
low complexity region
|
1127 |
1153 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000179836
AA Change: M955V
PolyPhen 2
Score 0.086 (Sensitivity: 0.93; Specificity: 0.85)
|
| SMART Domains |
Protein: ENSMUSP00000137141
Gene: ENSMUSG00000063142
AA Change: M955V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
transmembrane domain
|
54 |
73 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
91 |
262 |
4.2e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
180 |
268 |
9.5e-16 |
PFAM |
|
Pfam:BK_channel_a
|
389 |
457 |
2.4e-15 |
PFAM |
|
low complexity region
|
838 |
846 |
N/A |
INTRINSIC |
|
low complexity region
|
894 |
905 |
N/A |
INTRINSIC |
|
low complexity region
|
1008 |
1034 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000179097
AA Change: M976V
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000136568
Gene: ENSMUSG00000063142
AA Change: M976V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
transmembrane domain
|
54 |
73 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
91 |
262 |
4.6e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
180 |
268 |
1e-15 |
PFAM |
|
Pfam:TrkA_N
|
314 |
413 |
1.1e-7 |
PFAM |
|
Pfam:BK_channel_a
|
411 |
509 |
3.2e-31 |
PFAM |
|
low complexity region
|
859 |
867 |
N/A |
INTRINSIC |
|
low complexity region
|
915 |
926 |
N/A |
INTRINSIC |
|
low complexity region
|
1029 |
1055 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000188210
AA Change: M1036V
PolyPhen 2
Score 0.040 (Sensitivity: 0.94; Specificity: 0.83)
|
| SMART Domains |
Protein: ENSMUSP00000141069
Gene: ENSMUSG00000063142
AA Change: M1036V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
23 |
N/A |
INTRINSIC |
|
transmembrane domain
|
86 |
108 |
N/A |
INTRINSIC |
|
low complexity region
|
145 |
156 |
N/A |
INTRINSIC |
|
transmembrane domain
|
179 |
198 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
216 |
387 |
1.3e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
305 |
393 |
5.2e-16 |
PFAM |
|
Pfam:TrkA_N
|
439 |
538 |
7.8e-7 |
PFAM |
|
Pfam:BK_channel_a
|
536 |
634 |
5e-31 |
PFAM |
|
low complexity region
|
988 |
996 |
N/A |
INTRINSIC |
|
low complexity region
|
1044 |
1055 |
N/A |
INTRINSIC |
|
low complexity region
|
1158 |
1184 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000188991
AA Change: M1132V
PolyPhen 2
Score 0.159 (Sensitivity: 0.92; Specificity: 0.87)
|
| SMART Domains |
Protein: ENSMUSP00000140751
Gene: ENSMUSG00000063142
AA Change: M1132V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
23 |
N/A |
INTRINSIC |
|
transmembrane domain
|
86 |
108 |
N/A |
INTRINSIC |
|
low complexity region
|
145 |
156 |
N/A |
INTRINSIC |
|
transmembrane domain
|
179 |
198 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
216 |
387 |
3.3e-18 |
PFAM |
|
Pfam:Ion_trans_2
|
305 |
393 |
1.1e-15 |
PFAM |
|
Pfam:TrkA_N
|
439 |
538 |
3.7e-7 |
PFAM |
|
Pfam:BK_channel_a
|
536 |
634 |
3.4e-31 |
PFAM |
|
low complexity region
|
1015 |
1023 |
N/A |
INTRINSIC |
|
low complexity region
|
1071 |
1082 |
N/A |
INTRINSIC |
|
low complexity region
|
1185 |
1211 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000224232
AA Change: M1067V
PolyPhen 2
Score 0.273 (Sensitivity: 0.91; Specificity: 0.88)
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000224077
AA Change: M1074V
PolyPhen 2
Score 0.798 (Sensitivity: 0.84; Specificity: 0.93)
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000223655
AA Change: M1071V
PolyPhen 2
Score 0.637 (Sensitivity: 0.87; Specificity: 0.91)
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000224025
AA Change: M1027V
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000223727
AA Change: M1009V
PolyPhen 2
Score 0.059 (Sensitivity: 0.94; Specificity: 0.84)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000223749
AA Change: M1009V
PolyPhen 2
Score 0.231 (Sensitivity: 0.91; Specificity: 0.88)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000190985
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000225471
AA Change: M1038V
PolyPhen 2
Score 0.253 (Sensitivity: 0.91; Specificity: 0.88)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000224812
AA Change: M1042V
PolyPhen 2
Score 0.253 (Sensitivity: 0.91; Specificity: 0.88)
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000225556
AA Change: M1015V
PolyPhen 2
Score 0.637 (Sensitivity: 0.87; Specificity: 0.91)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000224468
AA Change: M1139V
PolyPhen 2
Score 0.139 (Sensitivity: 0.92; Specificity: 0.86)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000225431
AA Change: M1009V
PolyPhen 2
Score 0.153 (Sensitivity: 0.92; Specificity: 0.87)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000225315
AA Change: M1038V
PolyPhen 2
Score 0.253 (Sensitivity: 0.91; Specificity: 0.88)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000224787
AA Change: M958V
PolyPhen 2
Score 0.153 (Sensitivity: 0.92; Specificity: 0.87)
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000224285
AA Change: M1009V
PolyPhen 2
Score 0.706 (Sensitivity: 0.86; Specificity: 0.92)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000225794
|
| Coding Region Coverage |
- 1x: 99.7%
- 3x: 98.9%
- 10x: 97.0%
- 20x: 94.2%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] MaxiK channels are large conductance, voltage and calcium-sensitive potassium channels which are fundamental to the control of smooth muscle tone and neuronal excitability. MaxiK channels can be formed by 2 subunits: the pore-forming alpha subunit, which is the product of this gene, and the modulatory beta subunit. Intracellular calcium regulates the physical association between the alpha and beta subunits. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous inactivation of this gene leads to cerebellar ataxia, Purkinje cell dysfunction, uneven gait patterns, bladder hyperactivity, urinary incontinence, abnormal colonic K+ secretion, and hearing impairment. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 84 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700030K09Rik |
T |
C |
8: 73,209,216 (GRCm39) |
S415P |
probably benign |
Het |
| Adam19 |
C |
T |
11: 46,013,957 (GRCm39) |
P316S |
probably damaging |
Het |
| Adamts2 |
A |
G |
11: 50,558,972 (GRCm39) |
D229G |
probably benign |
Het |
| Adcy10 |
C |
T |
1: 165,337,959 (GRCm39) |
P191L |
probably damaging |
Het |
| Adgrv1 |
T |
C |
13: 81,707,269 (GRCm39) |
Y1379C |
probably damaging |
Het |
| Akap9 |
T |
C |
5: 4,020,685 (GRCm39) |
L1132P |
probably damaging |
Het |
| Aoah |
A |
G |
13: 21,189,243 (GRCm39) |
T489A |
probably benign |
Het |
| Apc2 |
T |
C |
10: 80,150,958 (GRCm39) |
L1975P |
probably damaging |
Het |
| Bpifa5 |
A |
T |
2: 154,005,616 (GRCm39) |
D66V |
probably benign |
Het |
| C230029F24Rik |
T |
C |
1: 49,374,629 (GRCm39) |
|
noncoding transcript |
Het |
| Cacna1h |
A |
T |
17: 25,607,641 (GRCm39) |
V892E |
probably damaging |
Het |
| Car4 |
G |
A |
11: 84,854,268 (GRCm39) |
V72I |
probably benign |
Het |
| Cfap91 |
C |
G |
16: 38,155,997 (GRCm39) |
M75I |
probably damaging |
Het |
| Chst3 |
A |
G |
10: 60,022,049 (GRCm39) |
L266P |
probably damaging |
Het |
| Ckap2l |
G |
A |
2: 129,127,411 (GRCm39) |
R256W |
possibly damaging |
Het |
| Cntn4 |
A |
T |
6: 106,595,296 (GRCm39) |
D471V |
probably damaging |
Het |
| Cntrob |
G |
A |
11: 69,213,694 (GRCm39) |
S32F |
probably damaging |
Het |
| Cpne7 |
T |
A |
8: 123,852,994 (GRCm39) |
N200K |
possibly damaging |
Het |
| Creb3l3 |
C |
A |
10: 80,922,416 (GRCm39) |
M271I |
probably benign |
Het |
| Csmd1 |
T |
A |
8: 17,077,339 (GRCm39) |
Q106L |
probably damaging |
Het |
| D7Ertd443e |
G |
A |
7: 133,896,701 (GRCm39) |
T563I |
probably damaging |
Het |
| Dmac1 |
T |
G |
4: 75,196,413 (GRCm39) |
N26H |
unknown |
Het |
| Dop1b |
T |
C |
16: 93,549,750 (GRCm39) |
F230L |
probably benign |
Het |
| Dpp6 |
T |
A |
5: 27,930,604 (GRCm39) |
I812N |
probably damaging |
Het |
| Fabp12 |
T |
C |
3: 10,315,203 (GRCm39) |
D48G |
probably benign |
Het |
| Fbn1 |
G |
A |
2: 125,143,669 (GRCm39) |
T2820M |
probably benign |
Het |
| Fcho1 |
C |
T |
8: 72,165,204 (GRCm39) |
A418T |
probably benign |
Het |
| Fcho2 |
A |
T |
13: 98,901,023 (GRCm39) |
S277R |
possibly damaging |
Het |
| Fmo2 |
A |
G |
1: 162,704,497 (GRCm39) |
S470P |
probably benign |
Het |
| Gm17541 |
T |
G |
12: 4,739,730 (GRCm39) |
|
probably benign |
Het |
| Gm4353 |
A |
T |
7: 115,682,706 (GRCm39) |
Y292N |
probably benign |
Het |
| Igkv4-71 |
A |
T |
6: 69,220,290 (GRCm39) |
I69N |
probably damaging |
Het |
| Insrr |
G |
T |
3: 87,717,991 (GRCm39) |
A871S |
probably benign |
Het |
| Irs2 |
C |
T |
8: 11,056,396 (GRCm39) |
V679M |
probably damaging |
Het |
| Itpr3 |
T |
A |
17: 27,326,263 (GRCm39) |
H1344Q |
probably benign |
Het |
| Kif1a |
G |
A |
1: 92,983,967 (GRCm39) |
R602W |
probably damaging |
Het |
| Kif21b |
A |
T |
1: 136,090,837 (GRCm39) |
D1215V |
probably benign |
Het |
| Mapk13 |
G |
A |
17: 28,995,327 (GRCm39) |
V183M |
probably damaging |
Het |
| Mbp |
C |
T |
18: 82,593,322 (GRCm39) |
S100F |
probably damaging |
Het |
| Mcm6 |
A |
G |
1: 128,283,373 (GRCm39) |
I44T |
probably benign |
Het |
| Ncor1 |
T |
A |
11: 62,264,148 (GRCm39) |
D418V |
possibly damaging |
Het |
| Nid2 |
T |
A |
14: 19,839,736 (GRCm39) |
|
probably null |
Het |
| Nolc1 |
T |
C |
19: 46,067,359 (GRCm39) |
V80A |
probably damaging |
Het |
| Or10a5 |
A |
T |
7: 106,635,439 (GRCm39) |
T26S |
probably benign |
Het |
| Or10ak14 |
C |
A |
4: 118,611,027 (GRCm39) |
C238F |
probably benign |
Het |
| Or12e9 |
A |
T |
2: 87,201,896 (GRCm39) |
R7W |
probably damaging |
Het |
| Or13e8 |
A |
C |
4: 43,697,079 (GRCm39) |
C31W |
probably damaging |
Het |
| Or1j1 |
A |
T |
2: 36,702,492 (GRCm39) |
L204* |
probably null |
Het |
| Or2ag1 |
A |
T |
7: 106,313,810 (GRCm39) |
M26K |
probably benign |
Het |
| Or2ag18 |
G |
A |
7: 106,405,018 (GRCm39) |
S217F |
probably damaging |
Het |
| Or4a68 |
T |
C |
2: 89,270,060 (GRCm39) |
T188A |
probably benign |
Het |
| Or4e1 |
T |
A |
14: 52,701,383 (GRCm39) |
M1L |
possibly damaging |
Het |
| Or5d14 |
A |
T |
2: 87,880,815 (GRCm39) |
I51N |
probably damaging |
Het |
| Or5m12 |
A |
G |
2: 85,735,348 (GRCm39) |
F17L |
probably damaging |
Het |
| Or7g35 |
T |
A |
9: 19,495,914 (GRCm39) |
I27N |
probably damaging |
Het |
| Pcgf3 |
T |
A |
5: 108,622,978 (GRCm39) |
C38S |
probably damaging |
Het |
| Pdia4 |
A |
T |
6: 47,777,936 (GRCm39) |
V352E |
probably damaging |
Het |
| Pik3c2a |
C |
A |
7: 115,953,290 (GRCm39) |
V1202L |
probably damaging |
Het |
| Rbm15 |
G |
T |
3: 107,239,846 (GRCm39) |
A184E |
possibly damaging |
Het |
| Rsph3a |
T |
A |
17: 8,197,952 (GRCm39) |
L442* |
probably null |
Het |
| Scg2 |
G |
C |
1: 79,413,320 (GRCm39) |
L468V |
probably damaging |
Het |
| Sdk1 |
A |
T |
5: 141,923,473 (GRCm39) |
I365L |
probably benign |
Het |
| Setdb1 |
A |
G |
3: 95,246,140 (GRCm39) |
V595A |
probably benign |
Het |
| Skic3 |
A |
C |
13: 76,295,925 (GRCm39) |
M1063L |
probably benign |
Het |
| Slc22a22 |
T |
A |
15: 57,113,046 (GRCm39) |
T398S |
probably benign |
Het |
| Stk11 |
C |
A |
10: 79,962,119 (GRCm39) |
P217Q |
probably damaging |
Het |
| Tes |
G |
A |
6: 17,097,557 (GRCm39) |
D222N |
probably benign |
Het |
| Tmem132e |
T |
A |
11: 82,325,894 (GRCm39) |
I206N |
possibly damaging |
Het |
| Tmem214 |
G |
T |
5: 31,029,876 (GRCm39) |
R251L |
probably damaging |
Het |
| Tmem253 |
T |
A |
14: 52,256,036 (GRCm39) |
I105N |
probably damaging |
Het |
| Toe1 |
A |
G |
4: 116,664,682 (GRCm39) |
V12A |
probably benign |
Het |
| Top1 |
C |
A |
2: 160,556,079 (GRCm39) |
H513N |
probably damaging |
Het |
| Tph1 |
G |
T |
7: 46,299,412 (GRCm39) |
Y376* |
probably null |
Het |
| Trim45 |
T |
A |
3: 100,830,535 (GRCm39) |
L103Q |
probably damaging |
Het |
| Ttn |
T |
A |
2: 76,774,518 (GRCm39) |
|
probably null |
Het |
| Twnk |
T |
C |
19: 44,996,185 (GRCm39) |
V206A |
probably damaging |
Het |
| Ube2z |
A |
G |
11: 95,941,114 (GRCm39) |
S343P |
probably damaging |
Het |
| Vmn2r8 |
T |
C |
5: 108,951,049 (GRCm39) |
D132G |
probably benign |
Het |
| Wdr20rt |
A |
T |
12: 65,272,581 (GRCm39) |
T15S |
probably benign |
Het |
| Wdr59 |
C |
T |
8: 112,185,579 (GRCm39) |
R841Q |
possibly damaging |
Het |
| Wdtc1 |
A |
G |
4: 133,036,151 (GRCm39) |
F130L |
possibly damaging |
Het |
| Wnk1 |
C |
T |
6: 119,939,764 (GRCm39) |
R43Q |
probably damaging |
Het |
| Ythdf3 |
T |
C |
3: 16,259,236 (GRCm39) |
L461P |
probably damaging |
Het |
| Zcchc2 |
T |
G |
1: 105,943,821 (GRCm39) |
F462C |
possibly damaging |
Het |
|
| Other mutations in Kcnma1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01318:Kcnma1
|
APN |
14 |
23,364,390 (GRCm39) |
splice site |
probably benign |
|
|
IGL01520:Kcnma1
|
APN |
14 |
23,551,211 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
IGL01977:Kcnma1
|
APN |
14 |
23,580,367 (GRCm39) |
splice site |
probably benign |
|
|
IGL02140:Kcnma1
|
APN |
14 |
23,359,113 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02165:Kcnma1
|
APN |
14 |
23,387,035 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
IGL02186:Kcnma1
|
APN |
14 |
23,576,881 (GRCm39) |
missense |
probably benign |
0.28 |
|
IGL02268:Kcnma1
|
APN |
14 |
23,593,144 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02353:Kcnma1
|
APN |
14 |
23,641,681 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02360:Kcnma1
|
APN |
14 |
23,641,681 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02491:Kcnma1
|
APN |
14 |
23,361,757 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02552:Kcnma1
|
APN |
14 |
23,436,327 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02625:Kcnma1
|
APN |
14 |
23,413,900 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02677:Kcnma1
|
APN |
14 |
23,513,224 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02706:Kcnma1
|
APN |
14 |
23,359,222 (GRCm39) |
missense |
probably damaging |
1.00 |
|
G1citation:Kcnma1
|
UTSW |
14 |
24,053,812 (GRCm39) |
splice site |
probably null |
|
|
PIT4495001:Kcnma1
|
UTSW |
14 |
23,475,665 (GRCm39) |
missense |
probably benign |
0.00 |
|
PIT4514001:Kcnma1
|
UTSW |
14 |
23,359,103 (GRCm39) |
splice site |
probably null |
|
|
PIT4576001:Kcnma1
|
UTSW |
14 |
23,359,103 (GRCm39) |
splice site |
probably null |
|
|
R0071:Kcnma1
|
UTSW |
14 |
23,576,835 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0071:Kcnma1
|
UTSW |
14 |
23,576,835 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0115:Kcnma1
|
UTSW |
14 |
23,364,243 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0172:Kcnma1
|
UTSW |
14 |
23,853,234 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0178:Kcnma1
|
UTSW |
14 |
23,576,835 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0183:Kcnma1
|
UTSW |
14 |
23,558,120 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0240:Kcnma1
|
UTSW |
14 |
23,544,647 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0240:Kcnma1
|
UTSW |
14 |
23,544,647 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0328:Kcnma1
|
UTSW |
14 |
23,423,265 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0631:Kcnma1
|
UTSW |
14 |
23,559,852 (GRCm39) |
splice site |
probably benign |
|
|
R0668:Kcnma1
|
UTSW |
14 |
23,417,563 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0811:Kcnma1
|
UTSW |
14 |
23,350,086 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R0812:Kcnma1
|
UTSW |
14 |
23,350,086 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R1080:Kcnma1
|
UTSW |
14 |
23,544,675 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1419:Kcnma1
|
UTSW |
14 |
23,417,710 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1446:Kcnma1
|
UTSW |
14 |
23,361,792 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1454:Kcnma1
|
UTSW |
14 |
23,513,268 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1651:Kcnma1
|
UTSW |
14 |
23,364,262 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1826:Kcnma1
|
UTSW |
14 |
23,380,997 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1827:Kcnma1
|
UTSW |
14 |
23,380,997 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1828:Kcnma1
|
UTSW |
14 |
23,380,997 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1864:Kcnma1
|
UTSW |
14 |
23,853,230 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2002:Kcnma1
|
UTSW |
14 |
23,387,097 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2140:Kcnma1
|
UTSW |
14 |
23,364,288 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2278:Kcnma1
|
UTSW |
14 |
23,593,151 (GRCm39) |
nonsense |
probably null |
|
|
R2866:Kcnma1
|
UTSW |
14 |
23,423,275 (GRCm39) |
missense |
probably benign |
0.16 |
|
R2867:Kcnma1
|
UTSW |
14 |
23,423,275 (GRCm39) |
missense |
probably benign |
0.16 |
|
R2867:Kcnma1
|
UTSW |
14 |
23,423,275 (GRCm39) |
missense |
probably benign |
0.16 |
|
R2900:Kcnma1
|
UTSW |
14 |
23,853,228 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3820:Kcnma1
|
UTSW |
14 |
23,350,006 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R3821:Kcnma1
|
UTSW |
14 |
23,417,679 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3901:Kcnma1
|
UTSW |
14 |
23,555,323 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R3975:Kcnma1
|
UTSW |
14 |
24,053,815 (GRCm39) |
critical splice donor site |
probably null |
|
|
R3976:Kcnma1
|
UTSW |
14 |
24,053,815 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4352:Kcnma1
|
UTSW |
14 |
23,361,720 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4517:Kcnma1
|
UTSW |
14 |
23,387,097 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4598:Kcnma1
|
UTSW |
14 |
23,853,228 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4604:Kcnma1
|
UTSW |
14 |
23,359,106 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4743:Kcnma1
|
UTSW |
14 |
23,853,270 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4754:Kcnma1
|
UTSW |
14 |
23,413,904 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R4908:Kcnma1
|
UTSW |
14 |
23,359,220 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4960:Kcnma1
|
UTSW |
14 |
24,054,186 (GRCm39) |
intron |
probably benign |
|
|
R5175:Kcnma1
|
UTSW |
14 |
23,386,106 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5218:Kcnma1
|
UTSW |
14 |
23,513,253 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R5435:Kcnma1
|
UTSW |
14 |
23,578,472 (GRCm39) |
nonsense |
probably null |
|
|
R5705:Kcnma1
|
UTSW |
14 |
24,053,839 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R5746:Kcnma1
|
UTSW |
14 |
23,544,635 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5780:Kcnma1
|
UTSW |
14 |
23,436,419 (GRCm39) |
nonsense |
probably null |
|
|
R5793:Kcnma1
|
UTSW |
14 |
23,359,103 (GRCm39) |
splice site |
probably null |
|
|
R6039:Kcnma1
|
UTSW |
14 |
23,359,105 (GRCm39) |
missense |
probably benign |
0.42 |
|
R6039:Kcnma1
|
UTSW |
14 |
23,359,105 (GRCm39) |
missense |
probably benign |
0.42 |
|
R6133:Kcnma1
|
UTSW |
14 |
24,053,936 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6271:Kcnma1
|
UTSW |
14 |
23,559,957 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6490:Kcnma1
|
UTSW |
14 |
23,386,165 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R6704:Kcnma1
|
UTSW |
14 |
24,052,882 (GRCm39) |
nonsense |
probably null |
|
|
R6822:Kcnma1
|
UTSW |
14 |
24,053,812 (GRCm39) |
splice site |
probably null |
|
|
R6855:Kcnma1
|
UTSW |
14 |
23,417,679 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6920:Kcnma1
|
UTSW |
14 |
23,576,602 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7017:Kcnma1
|
UTSW |
14 |
23,544,711 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R7081:Kcnma1
|
UTSW |
14 |
23,350,086 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7113:Kcnma1
|
UTSW |
14 |
23,513,224 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7131:Kcnma1
|
UTSW |
14 |
23,417,562 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7172:Kcnma1
|
UTSW |
14 |
23,576,691 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7207:Kcnma1
|
UTSW |
14 |
23,359,083 (GRCm39) |
makesense |
probably null |
|
|
R7308:Kcnma1
|
UTSW |
14 |
23,381,003 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7371:Kcnma1
|
UTSW |
14 |
23,544,638 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R7404:Kcnma1
|
UTSW |
14 |
24,052,902 (GRCm39) |
missense |
unknown |
|
|
R7560:Kcnma1
|
UTSW |
14 |
23,580,310 (GRCm39) |
missense |
probably benign |
0.15 |
|
R7693:Kcnma1
|
UTSW |
14 |
23,417,680 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7763:Kcnma1
|
UTSW |
14 |
23,350,074 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R7809:Kcnma1
|
UTSW |
14 |
23,423,324 (GRCm39) |
missense |
probably benign |
0.16 |
|
R7832:Kcnma1
|
UTSW |
14 |
23,440,991 (GRCm39) |
missense |
probably benign |
|
|
R7884:Kcnma1
|
UTSW |
14 |
23,387,057 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8013:Kcnma1
|
UTSW |
14 |
23,423,211 (GRCm39) |
missense |
probably benign |
0.31 |
|
R8014:Kcnma1
|
UTSW |
14 |
23,423,211 (GRCm39) |
missense |
probably benign |
0.31 |
|
R8066:Kcnma1
|
UTSW |
14 |
23,361,744 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8097:Kcnma1
|
UTSW |
14 |
23,381,032 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8154:Kcnma1
|
UTSW |
14 |
23,361,822 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R8507:Kcnma1
|
UTSW |
14 |
23,641,706 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8672:Kcnma1
|
UTSW |
14 |
23,551,230 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8677:Kcnma1
|
UTSW |
14 |
23,436,418 (GRCm39) |
missense |
probably benign |
0.36 |
|
R8725:Kcnma1
|
UTSW |
14 |
23,436,332 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8727:Kcnma1
|
UTSW |
14 |
23,436,332 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8827:Kcnma1
|
UTSW |
14 |
23,417,548 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8880:Kcnma1
|
UTSW |
14 |
23,417,718 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8997:Kcnma1
|
UTSW |
14 |
23,513,037 (GRCm39) |
intron |
probably benign |
|
|
R9056:Kcnma1
|
UTSW |
14 |
23,700,214 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R9346:Kcnma1
|
UTSW |
14 |
23,700,233 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R9403:Kcnma1
|
UTSW |
14 |
23,593,145 (GRCm39) |
missense |
probably benign |
0.05 |
|
R9438:Kcnma1
|
UTSW |
14 |
23,417,653 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9482:Kcnma1
|
UTSW |
14 |
23,441,033 (GRCm39) |
missense |
probably benign |
|
|
R9511:Kcnma1
|
UTSW |
14 |
23,361,793 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R9649:Kcnma1
|
UTSW |
14 |
23,501,666 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9663:Kcnma1
|
UTSW |
14 |
24,053,897 (GRCm39) |
missense |
probably benign |
0.15 |
|
R9673:Kcnma1
|
UTSW |
14 |
23,558,123 (GRCm39) |
missense |
probably benign |
0.01 |
|
RF001:Kcnma1
|
UTSW |
14 |
23,361,765 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGACATGCACACAATGACATTTGCC -3'
(R):5'- AGCTCCTATGGTTGTCAGATCCCC -3'
Sequencing Primer
(F):5'- CACAATGACATTTGCCTGGAG -3'
(R):5'- ATGGTTGTCAGATCCCCAAAGTG -3'
|
| Posted On |
2013-06-12 |
Incidental Mutation