Mutagenetix > Incidental Mutation

Incidental Mutation 'R5996:Trappc12'

481146

Institutional Source

Beutler Lab

Gene Symbol

Trappc12

Ensembl Gene

ENSMUSG00000020628

Gene Name

trafficking protein particle complex 12

Synonyms

CGI-87, Ttc15, D930014A20Rik

MMRRC Submission

044175-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.366) question?

Stock #

R5996 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

28740627-28800471 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 28797113 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 140 (S140P)

Ref Sequence

ENSEMBL: ENSMUSP00000020954 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020954] [ENSMUST00000035657] [ENSMUST00000168129] [ENSMUST00000170994] [ENSMUST00000221555] [ENSMUST00000221877] [ENSMUST00000222407]

AlphaFold

Q8K2L8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000020954
AA Change: S140P

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000020954
Gene: ENSMUSG00000020628
AA Change: S140P

Domain	Start	End	E-Value	Type
low complexity region	7	23	N/A	INTRINSIC
low complexity region	183	196	N/A	INTRINSIC
low complexity region	232	245	N/A	INTRINSIC
low complexity region	271	282	N/A	INTRINSIC
TPR	607	640	3.67e-3	SMART
TPR	642	675	1.44e1	SMART
TPR	682	715	3.37e-2	SMART
TPR	716	749	2.99e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000035657

SMART Domains

Protein: ENSMUSP00000038845
Gene: ENSMUSG00000036613

Domain	Start	End	E-Value	Type
low complexity region	43	56	N/A	INTRINSIC
Blast:WD40	57	100	1e-18	BLAST
WD40	122	163	6.39e0	SMART
WD40	172	213	2.29e1	SMART
WD40	216	257	6.38e-7	SMART
WD40	261	301	4.38e-5	SMART
WD40	335	375	1.2e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000168129
AA Change: S140P

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000127752
Gene: ENSMUSG00000020628
AA Change: S140P

Domain	Start	End	E-Value	Type
low complexity region	7	23	N/A	INTRINSIC
low complexity region	183	196	N/A	INTRINSIC
low complexity region	232	245	N/A	INTRINSIC
low complexity region	271	282	N/A	INTRINSIC
TPR	607	640	3.67e-3	SMART
TPR	642	675	1.44e1	SMART
TPR	682	715	3.37e-2	SMART
TPR	716	749	2.99e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000170994
AA Change: S140P

PolyPhen 2 Score 0.197 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000132009
Gene: ENSMUSG00000020628
AA Change: S140P

Domain	Start	End	E-Value	Type
low complexity region	7	23	N/A	INTRINSIC
low complexity region	183	196	N/A	INTRINSIC
low complexity region	232	245	N/A	INTRINSIC
low complexity region	271	282	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000221335

Predicted Effect

probably benign
Transcript: ENSMUST00000221555

Predicted Effect

probably benign
Transcript: ENSMUST00000221877

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000223552

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000223447

Predicted Effect

probably benign
Transcript: ENSMUST00000222407

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.6%
20x: 92.4%

Validation Efficiency

97% (69/71)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700093K21Rik	A	G	11: 23,468,928 (GRCm39)	M1T	probably null	Het
A2m	T	A	6: 121,636,353 (GRCm39)	W741R	probably damaging	Het
Abcb8	C	T	5: 24,605,137 (GRCm39)	R108C	possibly damaging	Het
Acan	A	G	7: 78,761,068 (GRCm39)	T1927A	probably damaging	Het
Agbl4	A	G	4: 110,812,869 (GRCm39)		probably null	Het
Bltp1	T	C	3: 36,985,265 (GRCm39)	F865S	probably benign	Het
Ccr8	T	A	9: 119,923,529 (GRCm39)	C215S	probably damaging	Het
Cd209b	T	C	8: 3,968,688 (GRCm39)	T314A	probably benign	Het
Cd244a	T	G	1: 171,409,208 (GRCm39)		probably null	Het
Cdh23	T	C	10: 60,249,356 (GRCm39)	E849G	possibly damaging	Het
Cep57	A	G	9: 13,721,175 (GRCm39)	V268A	probably damaging	Het
Clip4	T	C	17: 72,163,305 (GRCm39)	S626P	probably damaging	Het
Col19a1	C	T	1: 24,367,152 (GRCm39)	G477R	probably damaging	Het
Col4a4	T	C	1: 82,433,449 (GRCm39)	D1498G	unknown	Het
Coro6	T	C	11: 77,357,322 (GRCm39)	V177A	probably benign	Het
Crip3	T	C	17: 46,742,210 (GRCm39)	S202P	possibly damaging	Het
Cxcr2	T	C	1: 74,197,619 (GRCm39)	C38R	probably damaging	Het
Cyp4f13	C	T	17: 33,148,447 (GRCm39)	G327R	possibly damaging	Het
Dab2	C	T	15: 6,464,792 (GRCm39)	Q415*	probably null	Het
Dennd5b	A	G	6: 148,969,593 (GRCm39)	F287L	probably benign	Het
Dlg4	G	A	11: 69,908,057 (GRCm39)	R6K	probably benign	Het
Edc4	A	G	8: 106,614,033 (GRCm39)	K429E	probably damaging	Het
Fam107b	T	A	2: 3,780,667 (GRCm39)		probably null	Het
Flt4	A	T	11: 49,541,897 (GRCm39)	D1360V	probably damaging	Het
Gm1043	A	T	5: 37,317,168 (GRCm39)		probably benign	Het
Gm4894	A	T	9: 49,189,970 (GRCm39)	I82L	unknown	Het
Gm7247	C	T	14: 51,601,805 (GRCm39)	S26F	probably benign	Het
Gpr176	A	C	2: 118,114,385 (GRCm39)		probably null	Het
Gtse1	T	C	15: 85,748,381 (GRCm39)	L262P	probably benign	Het
Il4ra	T	C	7: 125,166,393 (GRCm39)	W46R	probably damaging	Het
Itga11	A	G	9: 62,662,955 (GRCm39)	Y557C	probably benign	Het
Kcnab2	A	C	4: 152,519,287 (GRCm39)		probably null	Het
Kcnh7	G	A	2: 63,014,441 (GRCm39)		probably benign	Het
Ly9	T	A	1: 171,429,396 (GRCm39)	Q230L	probably damaging	Het
Map2	C	A	1: 66,454,043 (GRCm39)	H978N	possibly damaging	Het
Map2k6	A	G	11: 110,388,732 (GRCm39)	I225V	possibly damaging	Het
Map3k13	A	G	16: 21,723,995 (GRCm39)	N326D	possibly damaging	Het
Mdga2	A	G	12: 66,844,537 (GRCm39)	F85L	probably benign	Het
Mmp13	C	T	9: 7,274,269 (GRCm39)	P192L	probably damaging	Het
Mrpl37	T	C	4: 106,923,704 (GRCm39)	T97A	probably benign	Het
Mycbpap	C	T	11: 94,404,420 (GRCm39)	G121D	probably benign	Het
Nabp1	A	G	1: 51,510,544 (GRCm39)	S153P	probably benign	Het
Nsun3	A	T	16: 62,590,049 (GRCm39)	F222I	probably benign	Het
Or4q3	A	G	14: 50,582,969 (GRCm39)	V310A	possibly damaging	Het
Pcdhga4	A	T	18: 37,818,991 (GRCm39)	D180V	probably benign	Het
Pex6	C	A	17: 47,025,384 (GRCm39)		probably null	Het
Phrf1	C	A	7: 140,839,015 (GRCm39)		probably benign	Het
Ppp1r36	A	G	12: 76,485,936 (GRCm39)	T365A	possibly damaging	Het
Ranbp10	A	G	8: 106,499,672 (GRCm39)	M519T	probably benign	Het
Rfx4	G	A	10: 84,675,881 (GRCm39)	W32*	probably null	Het
Ryr1	T	C	7: 28,723,666 (GRCm39)	N4131S	probably benign	Het
Slc27a6	A	G	18: 58,745,306 (GRCm39)	E580G	possibly damaging	Het
Slc7a14	T	C	3: 31,263,385 (GRCm39)	D719G	probably benign	Het
Slfn9	A	G	11: 82,878,310 (GRCm39)	I273T	possibly damaging	Het
Spice1	A	G	16: 44,205,037 (GRCm39)	E781G	probably benign	Het
Sspo	C	T	6: 48,471,110 (GRCm39)	P4686S	possibly damaging	Het
Stab1	G	T	14: 30,861,508 (GRCm39)	R2500S	probably benign	Het
Stox2	A	T	8: 47,656,182 (GRCm39)	M98K	possibly damaging	Het
Tacc2	T	C	7: 130,225,213 (GRCm39)	S633P	probably damaging	Het
Tex51	G	T	18: 32,595,545 (GRCm39)		probably benign	Het
Tm9sf4	T	C	2: 153,037,491 (GRCm39)		probably null	Het
Togaram2	T	A	17: 72,011,778 (GRCm39)	F486I	probably damaging	Het
Ttc29	A	T	8: 79,003,525 (GRCm39)	N247I	probably damaging	Het
Uso1	A	T	5: 92,340,589 (GRCm39)	E668D	probably benign	Het
Vmn2r69	A	T	7: 85,061,117 (GRCm39)		probably null	Het
Xirp2	T	A	2: 67,341,994 (GRCm39)	L1412I	possibly damaging	Het
Xrcc5	T	A	1: 72,349,617 (GRCm39)	D15E	probably damaging	Het
Zfp661	T	C	2: 127,418,968 (GRCm39)	K391E	probably damaging	Het
Zfp729b	A	G	13: 67,741,977 (GRCm39)	I106T	probably benign	Het
Zfyve9	A	C	4: 108,576,557 (GRCm39)	S175A	probably benign	Het

Other mutations in Trappc12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00418:Trappc12	APN	12	28,787,835 (GRCm39)	missense	probably damaging	0.99
IGL01018:Trappc12	APN	12	28,741,853 (GRCm39)	splice site	probably benign
IGL01295:Trappc12	APN	12	28,796,761 (GRCm39)	missense	probably damaging	1.00
IGL01365:Trappc12	APN	12	28,797,401 (GRCm39)	missense	probably damaging	1.00
IGL01490:Trappc12	APN	12	28,796,914 (GRCm39)	missense	probably damaging	1.00
IGL01975:Trappc12	APN	12	28,742,491 (GRCm39)	critical splice donor site	probably null
IGL02851:Trappc12	APN	12	28,741,405 (GRCm39)	missense	probably damaging	0.98
IGL02885:Trappc12	APN	12	28,797,013 (GRCm39)	missense	probably benign
IGL03163:Trappc12	APN	12	28,796,653 (GRCm39)	missense	probably damaging	1.00
R0102:Trappc12	UTSW	12	28,796,751 (GRCm39)	missense	probably damaging	1.00
R0102:Trappc12	UTSW	12	28,796,751 (GRCm39)	missense	probably damaging	1.00
R0330:Trappc12	UTSW	12	28,797,259 (GRCm39)	missense	probably benign	0.00
R0517:Trappc12	UTSW	12	28,747,133 (GRCm39)	splice site	probably benign
R0837:Trappc12	UTSW	12	28,753,596 (GRCm39)	missense	possibly damaging	0.92
R1439:Trappc12	UTSW	12	28,797,160 (GRCm39)	missense	possibly damaging	0.96
R1477:Trappc12	UTSW	12	28,787,751 (GRCm39)	missense	probably benign	0.25
R1651:Trappc12	UTSW	12	28,741,776 (GRCm39)	missense	probably benign	0.32
R1899:Trappc12	UTSW	12	28,796,984 (GRCm39)	missense	probably damaging	0.97
R1900:Trappc12	UTSW	12	28,796,984 (GRCm39)	missense	probably damaging	0.97
R2133:Trappc12	UTSW	12	28,796,597 (GRCm39)	missense	probably benign	0.00
R2174:Trappc12	UTSW	12	28,797,380 (GRCm39)	missense	possibly damaging	0.94
R4449:Trappc12	UTSW	12	28,797,234 (GRCm39)	missense	probably benign	0.05
R5031:Trappc12	UTSW	12	28,742,512 (GRCm39)	missense	possibly damaging	0.86
R5209:Trappc12	UTSW	12	28,787,793 (GRCm39)	missense	probably benign	0.03
R5220:Trappc12	UTSW	12	28,796,696 (GRCm39)	missense	probably damaging	0.97
R5458:Trappc12	UTSW	12	28,796,389 (GRCm39)	missense	probably damaging	0.98
R5471:Trappc12	UTSW	12	28,741,499 (GRCm39)	missense	probably damaging	1.00
R5482:Trappc12	UTSW	12	28,741,324 (GRCm39)	missense	probably damaging	0.97
R5808:Trappc12	UTSW	12	28,796,863 (GRCm39)	missense	probably damaging	1.00
R5916:Trappc12	UTSW	12	28,741,513 (GRCm39)	missense	probably damaging	1.00
R6378:Trappc12	UTSW	12	28,797,082 (GRCm39)	missense	probably damaging	0.97
R7669:Trappc12	UTSW	12	28,761,957 (GRCm39)	missense	probably benign	0.30
R9233:Trappc12	UTSW	12	28,772,414 (GRCm39)	missense	possibly damaging	0.88
R9323:Trappc12	UTSW	12	28,742,491 (GRCm39)	critical splice donor site	probably null
R9361:Trappc12	UTSW	12	28,796,417 (GRCm39)	missense	probably damaging	0.99
R9550:Trappc12	UTSW	12	28,761,985 (GRCm39)	critical splice acceptor site	probably null
R9784:Trappc12	UTSW	12	28,797,457 (GRCm39)	missense	probably benign	0.33

Predicted Primers

PCR Primer
(F):5'- TAGCCTGGCTGAAGATGGTG -3'
(R):5'- AAAGTGTGCTCATCTCCGAC -3'

Sequencing Primer
(F):5'- CTGGCTGAAGATGGTGCAGAC -3'
(R):5'- CTCTCCTAACAACAGCGAGGGG -3'

Posted On

2017-06-26