Mutagenetix > Incidental Mutation

Incidental Mutation 'PIT4378001:Bend5'

554982

Institutional Source

Beutler Lab

Gene Symbol

Bend5

Ensembl Gene

ENSMUSG00000028545

Gene Name

BEN domain containing 5

Synonyms

2310026E23Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.155) question?

Stock #

PIT4378001 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

111272203-111317495 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 111288304 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 106 (V106A)

Ref Sequence

ENSEMBL: ENSMUSP00000030274 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030274] [ENSMUST00000080744] [ENSMUST00000097920] [ENSMUST00000106591] [ENSMUST00000106592]

AlphaFold

Q8C6D4

Predicted Effect

probably benign
Transcript: ENSMUST00000030274
AA Change: V106A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000030274
Gene: ENSMUSG00000028545
AA Change: V106A

Domain	Start	End	E-Value	Type
coiled coil region	180	242	N/A	INTRINSIC
BEN	322	397	4.7e-12	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000080744

SMART Domains

Protein: ENSMUSP00000079568
Gene: ENSMUSG00000061298

Domain	Start	End	E-Value	Type
Zn_pept	169	436	4.95e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000097920

SMART Domains

Protein: ENSMUSP00000095533
Gene: ENSMUSG00000061298

Domain	Start	End	E-Value	Type
Zn_pept	169	465	3.6e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000106591

SMART Domains

Protein: ENSMUSP00000102201
Gene: ENSMUSG00000061298

Domain	Start	End	E-Value	Type
Pfam:Peptidase_M14	174	321	3.7e-33	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106592

SMART Domains

Protein: ENSMUSP00000102202
Gene: ENSMUSG00000061298

Domain	Start	End	E-Value	Type
Zn_pept	169	436	4.95e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000139876

SMART Domains

Protein: ENSMUSP00000119368
Gene: ENSMUSG00000028545

Domain	Start	End	E-Value	Type
coiled coil region	50	112	N/A	INTRINSIC
Blast:BEN	115	150	8e-13	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000148038

SMART Domains

Protein: ENSMUSP00000118551
Gene: ENSMUSG00000061298

Domain	Start	End	E-Value	Type
Zn_pept	15	267	9.65e-4	SMART

Coding Region Coverage

1x: 93.1%
3x: 90.8%
10x: 85.0%
20x: 72.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310033P09Rik	T	C	11: 59,099,802 (GRCm39)	V100A	probably benign	Het
Adamtsl1	T	C	4: 86,117,601 (GRCm39)	V188A	possibly damaging	Het
Aldh6a1	T	C	12: 84,488,646 (GRCm39)	D80G	probably benign	Het
Ankrd50	T	C	3: 38,509,412 (GRCm39)	Q62R	possibly damaging	Het
Aopep	T	C	13: 63,163,021 (GRCm39)	L14P	probably damaging	Het
Arrdc1	T	A	2: 24,816,645 (GRCm39)	Y177F	probably damaging	Het
Asap1	C	T	15: 64,007,697 (GRCm39)	R384Q	probably damaging	Het
Atxn2l	A	T	7: 126,096,443 (GRCm39)	V433D	probably benign	Het
Bbs1	G	A	19: 4,941,703 (GRCm39)	A529V	probably benign	Het
Bbx	G	A	16: 50,100,836 (GRCm39)	R20*	probably null	Het
C1galt1	A	G	6: 7,863,944 (GRCm39)	N8S	probably benign	Het
Cdc42ep1	G	A	15: 78,733,880 (GRCm39)	D327N	possibly damaging	Het
Cep162	A	G	9: 87,099,198 (GRCm39)	S767P	probably benign	Het
Cep43	T	C	17: 8,401,105 (GRCm39)	S209P	probably damaging	Het
Csmd1	T	C	8: 15,945,728 (GRCm39)	T3562A	probably damaging	Het
Dnah7a	A	G	1: 53,570,362 (GRCm39)	S1815P	probably damaging	Het
Ei24	A	T	9: 36,697,320 (GRCm39)	L136Q	probably damaging	Het
Extl2	T	G	3: 115,804,339 (GRCm39)	M1R	probably null	Het
Fat3	T	C	9: 16,288,104 (GRCm39)	E473G	probably benign	Het
Fcgbpl1	G	A	7: 27,853,889 (GRCm39)	D1618N	possibly damaging	Het
Fhip1a	A	G	3: 85,637,858 (GRCm39)	L147P	probably damaging	Het
G6pc3	T	A	11: 102,080,827 (GRCm39)	W26R	probably damaging	Het
Hc	T	A	2: 34,921,876 (GRCm39)	Y610F	probably benign	Het
Hecw1	T	C	13: 14,552,368 (GRCm39)	D77G	probably damaging	Het
Hgf	T	C	5: 16,816,860 (GRCm39)	V497A	probably damaging	Het
Hjurp	CTCTGGGAGGGCTTGCTCCGGGGGCAGTGTGTCCTGTTCTTGTGCAGCCCCT	C	1: 88,193,999 (GRCm39)		probably benign	Het
Hyou1	A	C	9: 44,302,148 (GRCm39)	D968A	probably benign	Het
Jmjd1c	T	A	10: 67,065,692 (GRCm39)	S1525T	probably damaging	Het
Kcnc4	G	A	3: 107,354,879 (GRCm39)	T523I	probably benign	Het
Kcng1	C	T	2: 168,104,604 (GRCm39)	C414Y	probably damaging	Het
Klhdc10	T	C	6: 30,447,411 (GRCm39)	I204T	probably damaging	Het
Krt18	A	T	15: 101,938,358 (GRCm39)	T194S	probably benign	Het
Krt76	A	C	15: 101,800,842 (GRCm39)	N151K	probably damaging	Het
Krtap31-2	A	G	11: 99,827,542 (GRCm39)	T125A	possibly damaging	Het
Lama5	A	G	2: 179,831,238 (GRCm39)	V1807A	possibly damaging	Het
Lats1	T	G	10: 7,581,369 (GRCm39)	V718G	probably damaging	Het
Mef2b	A	G	8: 70,616,910 (GRCm39)	K4E	probably damaging	Het
Mertk	T	C	2: 128,624,537 (GRCm39)		probably null	Het
Mroh8	A	G	2: 157,070,620 (GRCm39)	V577A	possibly damaging	Het
Mtcl1	T	G	17: 66,745,274 (GRCm39)	N381T	probably damaging	Het
Nfyc	T	A	4: 120,647,688 (GRCm39)		probably null	Het
Nol4	C	A	18: 23,172,933 (GRCm39)	W56L	probably damaging	Het
Notch2	A	T	3: 98,050,272 (GRCm39)	D1849V	probably damaging	Het
Or10ad1	G	A	15: 98,105,452 (GRCm39)	T271I	probably damaging	Het
Or10j7	T	C	1: 173,011,381 (GRCm39)	T207A	probably benign	Het
Or14c45	A	T	7: 86,176,306 (GRCm39)	T114S	possibly damaging	Het
Or4n4b	T	C	14: 50,536,355 (GRCm39)	N137S	probably benign	Het
Or5an10	A	G	19: 12,276,076 (GRCm39)	M140T	probably damaging	Het
Or7g28	T	A	9: 19,272,471 (GRCm39)	Y60F	probably damaging	Het
Or8s5	A	G	15: 98,238,153 (GRCm39)	V239A	possibly damaging	Het
Oxr1	G	A	15: 41,664,978 (GRCm39)	V138I	probably benign	Het
Pars2	A	G	4: 106,511,490 (GRCm39)	E424G	possibly damaging	Het
Peli2	C	A	14: 48,405,726 (GRCm39)	Y50*	probably null	Het
Plag1	T	A	4: 3,905,492 (GRCm39)	H66L	probably benign	Het
Psme4	T	C	11: 30,771,079 (GRCm39)		probably benign	Het
Robo1	A	T	16: 72,801,423 (GRCm39)	S1016C	probably damaging	Het
Rrbp1	A	G	2: 143,816,460 (GRCm39)	V723A	probably benign	Het
Sgip1	C	A	4: 102,778,280 (GRCm39)	D292E	unknown	Het
Skint4	T	A	4: 111,944,232 (GRCm39)	C23S	probably benign	Het
Slc22a28	A	C	19: 8,049,279 (GRCm39)	S323R	probably damaging	Het
Slc41a3	A	G	6: 90,617,891 (GRCm39)	T306A	probably benign	Het
Spata13	A	G	14: 60,987,445 (GRCm39)	M868V	probably damaging	Het
Spata6	T	G	4: 111,603,378 (GRCm39)	I31S	possibly damaging	Het
Sycp3	A	T	10: 88,302,366 (GRCm39)	K119*	probably null	Het
Tlk2	T	A	11: 105,172,046 (GRCm39)	S739T	unknown	Het
Trim10	T	C	17: 37,188,020 (GRCm39)	V412A	probably damaging	Het
Ttc3	T	A	16: 94,211,765 (GRCm39)	F377I	probably benign	Het
Uck1	T	A	2: 32,146,046 (GRCm39)	H283L	probably damaging	Het
Unc5a	T	C	13: 55,143,681 (GRCm39)	Y122H	possibly damaging	Het
Uncx	C	T	5: 139,530,377 (GRCm39)	R152*	probably null	Het
Usp44	A	G	10: 93,681,517 (GRCm39)		probably benign	Het
Vamp2	A	C	11: 68,980,564 (GRCm39)	D44A	probably benign	Het
Vmn2r83	A	G	10: 79,304,849 (GRCm39)	T20A	probably benign	Het
Vmn2r84	A	T	10: 130,221,784 (GRCm39)	I812N	probably damaging	Het
Vrtn	T	G	12: 84,695,943 (GRCm39)	L231R	probably damaging	Het
Wdr75	A	G	1: 45,859,333 (GRCm39)	T677A	probably damaging	Het
Xylt1	C	A	7: 117,148,100 (GRCm39)	S221R	possibly damaging	Het
Zscan22	A	G	7: 12,637,983 (GRCm39)	E125G	possibly damaging	Het
Zxdc	A	T	6: 90,350,698 (GRCm39)	H383L	probably damaging	Het

Other mutations in Bend5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01109:Bend5	APN	4	111,305,838 (GRCm39)	missense	probably damaging	0.99
IGL02083:Bend5	APN	4	111,316,964 (GRCm39)	missense	probably benign	0.44
IGL03202:Bend5	APN	4	111,290,441 (GRCm39)	missense	possibly damaging	0.79
IGL03379:Bend5	APN	4	111,311,468 (GRCm39)	missense	probably benign	0.06
R0639:Bend5	UTSW	4	111,290,495 (GRCm39)	missense	probably benign	0.21
R1306:Bend5	UTSW	4	111,316,970 (GRCm39)	nonsense	probably null
R1535:Bend5	UTSW	4	111,316,960 (GRCm39)	missense	probably benign	0.06
R1768:Bend5	UTSW	4	111,311,438 (GRCm39)	nonsense	probably null
R2116:Bend5	UTSW	4	111,272,436 (GRCm39)	missense	probably benign	0.09
R2216:Bend5	UTSW	4	111,305,787 (GRCm39)	missense	probably null	0.00
R2256:Bend5	UTSW	4	111,288,207 (GRCm39)	intron	probably benign
R3927:Bend5	UTSW	4	111,305,802 (GRCm39)	missense	possibly damaging	0.91
R5408:Bend5	UTSW	4	111,311,280 (GRCm39)	critical splice acceptor site	probably null
R5841:Bend5	UTSW	4	111,290,667 (GRCm39)	missense	probably damaging	1.00
R7860:Bend5	UTSW	4	111,272,406 (GRCm39)	missense	probably damaging	0.98
R8063:Bend5	UTSW	4	111,317,031 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACCACTGATGCTGTGTGCTG -3'
(R):5'- GCTCAGGGCTGATGACATC -3'

Sequencing Primer
(F):5'- CTCTCTGTGTAGGAGAGACTAGTCC -3'
(R):5'- TGACATCAGGAGACATTTATATGGG -3'

Posted On

2019-06-07