Mutagenetix > Incidental Mutation

Incidental Mutation 'R7962:Eomes'

650174

Institutional Source

Beutler Lab

Gene Symbol

Eomes

Ensembl Gene

ENSMUSG00000032446

Gene Name

eomesodermin

Synonyms

Tbr2

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7962 (G1)

Quality Score

80.0075

Status

Not validated

Chromosome

Chromosomal Location

118307259-118315176 bp(+) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

C to T at 118307574 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000118079 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035020] [ENSMUST00000111763] [ENSMUST00000150633]

AlphaFold

O54839

Predicted Effect

probably benign
Transcript: ENSMUST00000035020

SMART Domains

Protein: ENSMUSP00000035020
Gene: ENSMUSG00000032446

Domain	Start	End	E-Value	Type
low complexity region	73	96	N/A	INTRINSIC
low complexity region	127	134	N/A	INTRINSIC
low complexity region	211	240	N/A	INTRINSIC
low complexity region	246	266	N/A	INTRINSIC
TBOX	268	463	7.3e-120	SMART
Pfam:T-box_assoc	484	705	1.6e-101	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000111763

SMART Domains

Protein: ENSMUSP00000107393
Gene: ENSMUSG00000032446

Domain	Start	End	E-Value	Type
low complexity region	73	96	N/A	INTRINSIC
low complexity region	127	134	N/A	INTRINSIC
low complexity region	211	240	N/A	INTRINSIC
low complexity region	246	266	N/A	INTRINSIC
TBOX	268	463	5.53e-120	SMART
Blast:TBOX	485	511	6e-8	BLAST
low complexity region	648	659	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000150633

SMART Domains

Protein: ENSMUSP00000118079
Gene: ENSMUSG00000032446

Domain	Start	End	E-Value	Type
low complexity region	6	29	N/A	INTRINSIC
low complexity region	60	67	N/A	INTRINSIC
low complexity region	144	173	N/A	INTRINSIC
low complexity region	179	199	N/A	INTRINSIC
TBOX	201	395	8.01e-117	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the TBR1 (T-box brain protein 1) sub-family of T-box genes that share the common DNA-binding T-box domain. The encoded protein is a transcription factor which is crucial for embryonic development of mesoderm and the central nervous system in vertebrates. The protein may also be necessary for the differentiation of effector CD8+ T cells which are involved in defense against viral infections. A similar gene disrupted in mice is shown to be essential during trophoblast development and gastrulation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2013]
PHENOTYPE: Homozygous null mice display embryonic lethality, fail to implant, and lack trophoectoderm outgrowth. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrg6	A	G	10: 14,296,428 (GRCm39)	F991L	probably damaging	Het
Ahnak	A	G	19: 8,990,164 (GRCm39)	D3816G	unknown	Het
Arhgdig	T	C	17: 26,418,608 (GRCm39)	T153A	probably damaging	Het
Ash2l	T	C	8: 26,329,792 (GRCm39)	D122G	probably damaging	Het
Bora	A	G	14: 99,310,162 (GRCm39)	K497R	probably benign	Het
Btbd9	T	C	17: 30,736,177 (GRCm39)	H312R	probably damaging	Het
Cbr2	T	C	11: 120,620,609 (GRCm39)	D225G	probably benign	Het
Cemip	C	A	7: 83,652,616 (GRCm39)		probably benign	Het
Cfap70	G	A	14: 20,486,854 (GRCm39)	T275M	probably benign	Het
Clca4b	T	C	3: 144,622,421 (GRCm39)	D548G	possibly damaging	Het
Ctsf	T	G	19: 4,906,567 (GRCm39)	F165V	probably damaging	Het
Cyp3a44	T	A	5: 145,738,135 (GRCm39)	I57L	probably benign	Het
Dbx2	C	T	15: 95,552,199 (GRCm39)	G149S	probably benign	Het
Dennd2a	A	G	6: 39,457,207 (GRCm39)	V745A	possibly damaging	Het
Dock10	A	T	1: 80,564,085 (GRCm39)	S509R	possibly damaging	Het
Enpp3	T	C	10: 24,660,752 (GRCm39)	Y630C	probably damaging	Het
Fchsd1	A	T	18: 38,097,212 (GRCm39)	V385E	probably damaging	Het
Flg	A	T	3: 93,193,984 (GRCm39)	H34L	unknown	Het
Frs3	G	T	17: 48,010,463 (GRCm39)	E32D	possibly damaging	Het
Gm14443	C	T	2: 175,012,035 (GRCm39)	C137Y	probably benign	Het
H3c13	C	A	3: 96,176,309 (GRCm39)	Y100*	probably null	Het
Havcr1	T	A	11: 46,643,402 (GRCm39)	C107*	probably null	Het
Hectd4	C	T	5: 121,448,692 (GRCm39)	R347W	probably damaging	Het
Hspbp1	A	G	7: 4,684,841 (GRCm39)		probably null	Het
Irs1	C	T	1: 82,266,443 (GRCm39)	R591H	possibly damaging	Het
Kif5b	A	G	18: 6,241,040 (GRCm39)	V23A	probably benign	Het
Myo1e	A	T	9: 70,242,501 (GRCm39)	I339F	possibly damaging	Het
Nkx2-5	T	C	17: 27,058,150 (GRCm39)	Y268C	probably damaging	Het
Or7g12	T	C	9: 18,899,952 (GRCm39)	S223P	probably damaging	Het
Polrmt	T	C	10: 79,574,623 (GRCm39)	M857V	probably damaging	Het
Prkd3	T	A	17: 79,315,691 (GRCm39)	M1L	not run	Het
Prss3b	A	C	6: 41,012,387 (GRCm39)	F9C	probably benign	Het
Psmc3	T	A	2: 90,887,007 (GRCm39)	V202E	possibly damaging	Het
Rab3d	G	A	9: 21,826,229 (GRCm39)	R93C	probably damaging	Het
Rasgrf2	A	C	13: 92,167,300 (GRCm39)	Y258D	probably damaging	Het
Rassf8	G	A	6: 145,761,669 (GRCm39)		probably null	Het
Rcbtb1	A	C	14: 59,459,016 (GRCm39)	S199R	probably benign	Het
Rif1	T	G	2: 51,964,288 (GRCm39)	V45G	probably damaging	Het
Riok3	G	A	18: 12,269,776 (GRCm39)	G69E	probably benign	Het
Scn1a	A	G	2: 66,158,786 (GRCm39)	L378P	probably damaging	Het
Sil1	A	T	18: 35,481,719 (GRCm39)	N113K	probably benign	Het
Slc35c2	C	T	2: 165,119,462 (GRCm39)	D293N	probably damaging	Het
Slc37a3	A	T	6: 39,324,325 (GRCm39)	S308T	possibly damaging	Het
Smarca5	A	T	8: 81,463,388 (GRCm39)	V60E	probably benign	Het
Smok3c	T	A	5: 138,063,341 (GRCm39)	V276D	probably damaging	Het
Snx29	G	A	16: 11,231,221 (GRCm39)		probably null	Het
Spata24	T	C	18: 35,795,093 (GRCm39)	E30G	probably damaging	Het
Stard13	T	A	5: 150,975,838 (GRCm39)	I777F	probably damaging	Het
Synpo2	A	G	3: 123,029,635 (GRCm39)	C8R	probably benign	Het
Tmem104	T	C	11: 115,134,307 (GRCm39)	V281A	probably damaging	Het
Tmprss11a	C	T	5: 86,567,879 (GRCm39)	G283R	probably damaging	Het
Trpc2	G	A	7: 101,738,388 (GRCm39)	V457M	probably benign	Het
Usp53	A	T	3: 122,728,000 (GRCm39)	S861T	possibly damaging	Het
Uty	G	T	Y: 1,154,210 (GRCm39)	S738*	probably null	Het
Wdr17	C	T	8: 55,113,806 (GRCm39)		probably null	Het
Wdr7	A	T	18: 64,037,157 (GRCm39)	S1194C	probably damaging	Het
Zyx	A	C	6: 42,333,505 (GRCm39)	D477A	probably damaging	Het

Other mutations in Eomes

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01112:Eomes	APN	9	118,311,334 (GRCm39)	missense	probably damaging	1.00
IGL01322:Eomes	APN	9	118,313,898 (GRCm39)	missense	probably benign	0.14
IGL01532:Eomes	APN	9	118,311,317 (GRCm39)	missense	probably damaging	1.00
R0088:Eomes	UTSW	9	118,307,741 (GRCm39)	missense	probably damaging	0.99
R0305:Eomes	UTSW	9	118,313,825 (GRCm39)	missense	probably benign	0.11
R0894:Eomes	UTSW	9	118,311,368 (GRCm39)	splice site	probably null
R1110:Eomes	UTSW	9	118,313,667 (GRCm39)	missense	probably benign	0.29
R1326:Eomes	UTSW	9	118,313,565 (GRCm39)	nonsense	probably null
R1942:Eomes	UTSW	9	118,313,716 (GRCm39)	missense	probably benign	0.01
R2108:Eomes	UTSW	9	118,307,920 (GRCm39)	missense	probably benign	0.09
R2237:Eomes	UTSW	9	118,311,359 (GRCm39)	missense	probably damaging	1.00
R2238:Eomes	UTSW	9	118,311,359 (GRCm39)	missense	probably damaging	1.00
R2239:Eomes	UTSW	9	118,311,359 (GRCm39)	missense	probably damaging	1.00
R3915:Eomes	UTSW	9	118,310,341 (GRCm39)	missense	probably benign	0.01
R4158:Eomes	UTSW	9	118,308,031 (GRCm39)	missense	probably benign
R5274:Eomes	UTSW	9	118,309,597 (GRCm39)	missense	probably damaging	1.00
R6894:Eomes	UTSW	9	118,310,353 (GRCm39)	missense	probably damaging	1.00
R7055:Eomes	UTSW	9	118,309,567 (GRCm39)	missense	possibly damaging	0.57
R7115:Eomes	UTSW	9	118,313,557 (GRCm39)	missense	probably benign	0.00
R8053:Eomes	UTSW	9	118,309,621 (GRCm39)	missense	probably damaging	1.00
R8346:Eomes	UTSW	9	118,314,036 (GRCm39)	missense	probably benign	0.07
R9060:Eomes	UTSW	9	118,311,364 (GRCm39)	makesense	probably null
R9409:Eomes	UTSW	9	118,314,069 (GRCm39)	missense	probably benign	0.23
R9443:Eomes	UTSW	9	118,313,640 (GRCm39)	missense
X0021:Eomes	UTSW	9	118,311,326 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TAGGGGTCCTGAGAGGTTAGAC -3'
(R):5'- CACTCTCCAGCGAGTAGAAGTG -3'

Sequencing Primer
(F):5'- TCCTGAGAGGTTAGACAAGGAG -3'
(R):5'- TTCACCGAGCTCACCAGGAG -3'

Posted On

2020-09-15