Mutagenetix > Incidental Mutation

Incidental Mutation 'R8804:Vrk3'

671918

Institutional Source

Beutler Lab

Gene Symbol

Vrk3

Ensembl Gene

ENSMUSG00000002205

Gene Name

vaccinia related kinase 3

Synonyms

MMRRC Submission

068641-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8804 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

44398049-44426939 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 44407270 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Stop codon at position 80 (C80*)

Ref Sequence

ENSEMBL: ENSMUSP00000002275 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000002275] [ENSMUST00000125705] [ENSMUST00000144515] [ENSMUST00000147952] [ENSMUST00000165957] [ENSMUST00000171821]

AlphaFold

Q8K3G5

Predicted Effect

probably null
Transcript: ENSMUST00000002275
AA Change: C80*

SMART Domains

Protein: ENSMUSP00000002275
Gene: ENSMUSG00000002205
AA Change: C80*

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	212	432	3.2e-8	PFAM
Pfam:Pkinase	218	432	4.2e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000125705

Predicted Effect

probably null
Transcript: ENSMUST00000144515
AA Change: C80*

SMART Domains

Protein: ENSMUSP00000119073
Gene: ENSMUSG00000002205
AA Change: C80*

Domain	Start	End	E-Value	Type
Pfam:zf-ribbon_3	1	26	1.2e-11	PFAM
Pfam:zinc_ribbon_2	4	26	3e-10	PFAM
PDB:2JII\|B	97	176	3e-36	PDB

Predicted Effect

probably null
Transcript: ENSMUST00000147952
AA Change: C80*

SMART Domains

Protein: ENSMUSP00000130331
Gene: ENSMUSG00000002205
AA Change: C80*

Domain	Start	End	E-Value	Type
Pfam:zf-ribbon_3	1	26	1.1e-11	PFAM
Pfam:zinc_ribbon_2	4	26	2.9e-10	PFAM
PDB:2JII\|B	117	162	1e-8	PDB

Predicted Effect

probably null
Transcript: ENSMUST00000165957
AA Change: C80*

SMART Domains

Protein: ENSMUSP00000131704
Gene: ENSMUSG00000002205
AA Change: C80*

Domain	Start	End	E-Value	Type
Pfam:zf-ribbon_3	1	26	6.7e-12	PFAM
Pfam:zinc_ribbon_2	4	26	4.4e-10	PFAM
PDB:2JII\|B	117	204	7e-30	PDB

Predicted Effect

probably null
Transcript: ENSMUST00000171821
AA Change: C80*

SMART Domains

Protein: ENSMUSP00000132748
Gene: ENSMUSG00000002205
AA Change: C80*

Domain	Start	End	E-Value	Type
Pfam:zf-ribbon_3	1	26	2.9e-12	PFAM
Pfam:zinc_ribbon_2	4	26	2e-10	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

98% (79/81)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the vaccinia-related kinase (VRK) family of serine/threonine protein kinases. In both human and mouse, this gene has substitutions at several residues within the ATP binding motifs that in other kinases have been shown to be required for catalysis. In vitro assays indicate the protein lacks phosphorylation activity. The protein, however, likely retains its substrate binding capability. This gene is widely expressed in human tissues and its protein localizes to the nucleus. Alternative splicing results in multiple transcripts encoding different isoforms. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele display impaired social behavior, decreased fear and anxiety relate behavior, impaired spatial memory, and abnormal hippocampal dendritic spine and synapse morphologies. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700064H15Rik	T	C	3: 19,682,820 (GRCm39)		probably benign	Het
Adamts1	A	G	16: 85,599,300 (GRCm39)	F100S	probably damaging	Het
Adamts5	A	G	16: 85,666,800 (GRCm39)		probably benign	Het
Adgrb2	T	A	4: 129,899,212 (GRCm39)	W309R	probably damaging	Het
Adgrl2	A	T	3: 148,552,652 (GRCm39)	V617E	probably damaging	Het
Akt1	T	C	12: 112,625,041 (GRCm39)	E169G	probably damaging	Het
Arhgap40	A	G	2: 158,389,626 (GRCm39)	T600A	probably benign	Het
B4galt3	C	T	1: 171,103,947 (GRCm39)	H395Y	probably benign	Het
BC024139	T	G	15: 76,008,284 (GRCm39)	T376P	possibly damaging	Het
Bin3	A	G	14: 70,361,296 (GRCm39)	R22G	probably damaging	Het
Cadps2	A	T	6: 23,496,805 (GRCm39)	I480N	probably damaging	Het
Camsap3	A	G	8: 3,652,624 (GRCm39)	T401A	probably benign	Het
Ccdc168	T	C	1: 44,095,809 (GRCm39)	N1763S	probably benign	Het
Cdhr5	T	C	7: 140,849,320 (GRCm39)	T747A	probably benign	Het
Chn2	A	G	6: 54,250,061 (GRCm39)	I193V	probably benign	Het
Clca3b	T	C	3: 144,544,898 (GRCm39)	N363S	probably benign	Het
Clec7a	T	C	6: 129,442,518 (GRCm39)	T125A	probably benign	Het
Cys1	A	T	12: 24,718,610 (GRCm39)	L81Q	unknown	Het
Dcbld2	G	A	16: 58,281,412 (GRCm39)		probably benign	Het
Ddx60	T	A	8: 62,411,640 (GRCm39)	D497E	probably benign	Het
Dnah2	T	C	11: 69,356,511 (GRCm39)	I2117V	probably benign	Het
Dnah6	G	A	6: 73,042,756 (GRCm39)	S3274F	probably benign	Het
Dock9	A	T	14: 121,842,595 (GRCm39)	I1225N	probably damaging	Het
Egfr	A	G	11: 16,819,339 (GRCm39)	T290A	probably benign	Het
Elmod2	T	A	8: 84,046,150 (GRCm39)	K142N	probably benign	Het
Ephx2	T	C	14: 66,324,469 (GRCm39)	T441A	probably benign	Het
Fam234a	A	G	17: 26,435,531 (GRCm39)		probably benign	Het
Fer1l4	C	A	2: 155,893,914 (GRCm39)	E102D	probably benign	Het
Fermt3	A	G	19: 6,991,694 (GRCm39)		probably benign	Het
Fgd5	C	T	6: 91,964,507 (GRCm39)	R247C	probably benign	Het
Gm14443	G	A	2: 175,011,652 (GRCm39)	H265Y	probably damaging	Het
Gykl1	A	G	18: 52,827,608 (GRCm39)	D272G	probably benign	Het
Hip1r	T	C	5: 124,139,575 (GRCm39)	S952P	possibly damaging	Het
Hmcn2	A	G	2: 31,315,393 (GRCm39)	N3714S	probably benign	Het
Ighv1-36	G	T	12: 114,843,581 (GRCm39)	T93K	probably benign	Het
Igsf10	T	G	3: 59,243,876 (GRCm39)	T153P	probably damaging	Het
Kif13b	T	C	14: 64,987,791 (GRCm39)	C773R	probably damaging	Het
Lipf	T	A	19: 33,942,198 (GRCm39)	Y43N	probably damaging	Het
Mlh1	T	C	9: 111,093,972 (GRCm39)	D90G	probably damaging	Het
Msh5	A	T	17: 35,251,830 (GRCm39)	I410K	probably benign	Het
Mylk3	T	C	8: 86,085,874 (GRCm39)	D220G	probably benign	Het
Ncdn	G	A	4: 126,643,898 (GRCm39)	A308V	probably benign	Het
Nfu1	T	A	6: 86,993,414 (GRCm39)		probably benign	Het
Nup153	A	G	13: 46,840,635 (GRCm39)	V991A	probably benign	Het
Nup188	T	A	2: 30,220,891 (GRCm39)	H960Q	probably benign	Het
Parp4	G	T	14: 56,853,900 (GRCm39)	E839*	probably null	Het
Pfas	T	C	11: 68,881,908 (GRCm39)	N30D		Het
Pitpnc1	T	A	11: 107,103,431 (GRCm39)	N223Y	probably damaging	Het
Plaat1	T	A	16: 29,039,205 (GRCm39)	V95E	probably benign	Het
Plod1	C	T	4: 147,997,778 (GRCm39)	V644I	probably damaging	Het
Pou2f1	T	C	1: 165,708,039 (GRCm39)	T548A	unknown	Het
Psg20	A	T	7: 18,416,584 (GRCm39)	N177K	possibly damaging	Het
Psmb8	T	A	17: 34,419,225 (GRCm39)	I173N	probably damaging	Het
Rimkla	G	A	4: 119,325,273 (GRCm39)	Q379*	probably null	Het
Rnasel	G	T	1: 153,629,661 (GRCm39)	G59V	probably damaging	Het
Rptn	A	T	3: 93,303,150 (GRCm39)	D161V	probably damaging	Het
Scrt1	C	A	15: 76,403,411 (GRCm39)	C193F	unknown	Het
Sdk2	G	T	11: 113,763,978 (GRCm39)	Y269*	probably null	Het
Sfxn2	G	C	19: 46,574,243 (GRCm39)		probably benign	Het
Slc17a4	G	T	13: 24,087,245 (GRCm39)	T264K	probably benign	Het
Slfn8	T	A	11: 82,907,639 (GRCm39)	Q301H	possibly damaging	Het
Sntb1	G	A	15: 55,655,523 (GRCm39)	S231F	probably benign	Het
Spag17	T	A	3: 99,874,506 (GRCm39)	S137T	probably benign	Het
Srd5a2	A	T	17: 74,354,629 (GRCm39)	V65E	possibly damaging	Het
Stk11ip	A	G	1: 75,511,900 (GRCm39)	H967R	probably benign	Het
Sun1	A	G	5: 139,216,920 (GRCm39)	T320A	probably benign	Het
Svep1	A	G	4: 58,206,043 (GRCm39)	S112P	possibly damaging	Het
Tacc2	T	C	7: 130,294,693 (GRCm39)	L15P	probably benign	Het
Tas2r140	T	A	6: 133,032,326 (GRCm39)	N144I	probably damaging	Het
Thpo	T	A	16: 20,544,707 (GRCm39)	R174S	probably damaging	Het
Tnik	A	T	3: 28,648,202 (GRCm39)	Q418L	unknown	Het
Tnr	A	T	1: 159,685,882 (GRCm39)	Q371L	probably benign	Het
Tulp2	G	A	7: 45,170,398 (GRCm39)	R439Q	probably damaging	Het
Uchl4	G	T	9: 64,142,606 (GRCm39)	W29L	probably damaging	Het
Washc4	T	C	10: 83,408,015 (GRCm39)	L540P	probably damaging	Het
Wscd1	T	C	11: 71,675,161 (GRCm39)	F356S	probably damaging	Het
Wwc1	A	T	11: 35,774,144 (GRCm39)	M372K	probably benign	Het
Zfhx2	A	G	14: 55,312,191 (GRCm39)	F168L	probably benign	Het
Zfp28	A	G	7: 6,393,399 (GRCm39)	D175G	probably damaging	Het

Other mutations in Vrk3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00495:Vrk3	APN	7	44,419,071 (GRCm39)	missense	probably damaging	1.00
IGL01540:Vrk3	APN	7	44,416,568 (GRCm39)	missense	probably damaging	1.00
IGL02682:Vrk3	APN	7	44,403,244 (GRCm39)	missense	probably benign	0.19
R0462:Vrk3	UTSW	7	44,413,624 (GRCm39)	missense	possibly damaging	0.77
R0831:Vrk3	UTSW	7	44,414,227 (GRCm39)	missense	probably damaging	1.00
R1760:Vrk3	UTSW	7	44,417,895 (GRCm39)	missense	probably damaging	0.98
R2212:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R2289:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R2915:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R3027:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R3028:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R3416:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R3417:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R3613:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R3877:Vrk3	UTSW	7	44,412,460 (GRCm39)	splice site	probably null
R4357:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R4359:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R4379:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R4381:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R4439:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R4441:Vrk3	UTSW	7	44,424,866 (GRCm39)	missense	probably benign	0.00
R4773:Vrk3	UTSW	7	44,424,900 (GRCm39)	missense	probably benign
R5222:Vrk3	UTSW	7	44,409,220 (GRCm39)	missense	possibly damaging	0.67
R5808:Vrk3	UTSW	7	44,409,298 (GRCm39)	missense	probably damaging	0.96
R6180:Vrk3	UTSW	7	44,419,035 (GRCm39)	missense	possibly damaging	0.50
R7007:Vrk3	UTSW	7	44,407,187 (GRCm39)	missense	probably damaging	0.97
R7058:Vrk3	UTSW	7	44,417,890 (GRCm39)	missense	probably damaging	0.98
R7425:Vrk3	UTSW	7	44,420,348 (GRCm39)	critical splice donor site	probably null
R7995:Vrk3	UTSW	7	44,413,585 (GRCm39)	missense	probably damaging	1.00
R9123:Vrk3	UTSW	7	44,407,254 (GRCm39)	missense	possibly damaging	0.94
R9330:Vrk3	UTSW	7	44,424,910 (GRCm39)	missense	probably damaging	0.98
R9681:Vrk3	UTSW	7	44,403,356 (GRCm39)	missense	possibly damaging	0.96

Predicted Primers

PCR Primer
(F):5'- ATGGCTTTCGCAGTGCACAG -3'
(R):5'- GTTCAAGGCAAGAGTGACTGGC -3'

Sequencing Primer
(F):5'- AGATGGCCCTTCCCTCAGAATG -3'
(R):5'- ATCTCTAGGATCTGGAGCTACAG -3'

Posted On

2021-04-30