Mutagenetix > Incidental Mutation

Incidental Mutation 'R9008:Krt78'

685465

Institutional Source

Beutler Lab

Gene Symbol

Krt78

Ensembl Gene

ENSMUSG00000050463

Gene Name

keratin 78

Synonyms

2310030B04Rik

MMRRC Submission

068838-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.089) question?

Stock #

R9008 (G1)

Quality Score

127.467

Status

Not validated

Chromosome

Chromosomal Location

101854436-101862722 bp(-) (GRCm39)

Type of Mutation

small deletion (11 aa in frame mutation)

DNA Base Change (assembly)

TAGGCACGGTCACCTGGCCTCCATATTCTCTCCCAGGCACGGTCACCTGGCCTCCACATTCTCCTCTAGGCACGGTCACCTGGCCTCCATATTCTCTCCCAGGCACGGTCACCTGGCCTCCAGATTCTCTTCCAGGCATGGTCACCTGGCCTCCATATTCTCTTCCAGGCACGGTCACCTGGCCTCCA to TAGGCACGGTCACCTGGCCTCCACATTCTCCTCTAGGCACGGTCACCTGGCCTCCATATTCTCTCCCAGGCACGGTCACCTGGCCTCCAGATTCTCTTCCAGGCATGGTCACCTGGCCTCCATATTCTCTTCCAGGCACGGTCACCTGGCCTCCA at 101855211 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000126197 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000164932]

AlphaFold

E9Q0F0

Predicted Effect

probably benign
Transcript: ENSMUST00000164932

SMART Domains

Protein: ENSMUSP00000126197
Gene: ENSMUSG00000050463

Domain	Start	End	E-Value	Type
Pfam:Keratin_2_head	2	101	5.7e-16	PFAM
Filament	104	417	1.38e-133	SMART
internal_repeat_1	421	660	8.87e-74	PROSPERO
internal_repeat_1	704	957	8.87e-74	PROSPERO
low complexity region	1033	1049	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.5%

Validation Efficiency

98% (78/80)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the type II keratin gene family and encodes a protein with an intermediate filament domain. Keratins are the major structural proteins in epithelial cells, forming a cytoplasmic network of 10 to 12 nm wide intermediate filaments and creating a scaffold that gives cells the ability to withstand mechanical and non-mechanical stresses. The genes of the type II keratin family are located as a gene cluster at 12p13.13. Four pseudogenes of this gene family have been identified. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc4	A	T	14: 118,849,162 (GRCm39)	S536R	probably damaging	Het
Acacb	G	A	5: 114,386,815 (GRCm39)		silent	Het
Acsm1	T	C	7: 119,258,325 (GRCm39)	Y473H	probably benign	Het
Adam30	T	A	3: 98,070,034 (GRCm39)	C622*	probably null	Het
Adprs	C	T	4: 126,210,632 (GRCm39)	V283M	probably damaging	Het
AI606181	G	T	19: 41,582,032 (GRCm39)	R67S	unknown	Het
Btbd3	A	G	2: 138,125,453 (GRCm39)	I212M	probably benign	Het
C1s1	C	T	6: 124,509,499 (GRCm39)		probably null	Het
C7	T	A	15: 5,040,409 (GRCm39)	T539S		Het
Cd5l	A	C	3: 87,275,972 (GRCm39)	D314A	probably damaging	Het
Celsr3	T	A	9: 108,706,151 (GRCm39)	V878E	possibly damaging	Het
Cfap74	T	C	4: 155,503,121 (GRCm39)	S38P		Het
Chst2	C	T	9: 95,288,347 (GRCm39)		probably benign	Het
Deaf1	T	C	7: 140,904,078 (GRCm39)	T103A	probably damaging	Het
Deup1	T	A	9: 15,511,140 (GRCm39)	D213V	probably damaging	Het
Dhrs1	A	G	14: 55,978,638 (GRCm39)		probably null	Het
Dnah7a	A	G	1: 53,701,501 (GRCm39)	V218A	possibly damaging	Het
Dock7	G	A	4: 98,833,448 (GRCm39)	Q1950*	probably null	Het
Ehf	G	A	2: 103,097,173 (GRCm39)	R283W		Het
Elovl3	A	T	19: 46,123,087 (GRCm39)	N221I	possibly damaging	Het
Gm11938	A	T	11: 99,493,966 (GRCm39)	V43E	probably damaging	Het
Hmcn1	T	C	1: 150,630,795 (GRCm39)		probably benign	Het
Hnf4g	A	G	3: 3,708,096 (GRCm39)	N115S	probably benign	Het
Hnrnpr	A	T	4: 136,056,737 (GRCm39)	N246Y	probably damaging	Het
Itpka	A	G	2: 119,579,894 (GRCm39)	E211G	probably damaging	Het
Lcorl	A	T	5: 45,931,516 (GRCm39)		probably benign	Het
Lypd9	T	A	11: 58,338,209 (GRCm39)	E61V	probably benign	Het
Mgat5	T	C	1: 127,407,308 (GRCm39)	I658T	probably damaging	Het
Mier2	G	A	10: 79,384,274 (GRCm39)	R166W	probably damaging	Het
Mov10	A	G	3: 104,707,332 (GRCm39)	Y606H	probably benign	Het
Naa38	T	G	11: 69,287,148 (GRCm39)	V76G	probably damaging	Het
Nelfe	C	A	17: 35,073,334 (GRCm39)	P290T	possibly damaging	Het
Nfil3	A	T	13: 53,121,609 (GRCm39)	Y432N	probably damaging	Het
Nipbl	T	C	15: 8,356,608 (GRCm39)	K1593E	probably damaging	Het
Nlrc3	G	C	16: 3,776,807 (GRCm39)	L56V	possibly damaging	Het
Nlrp1a	A	T	11: 71,014,735 (GRCm39)	F172I	possibly damaging	Het
Ntn4	T	A	10: 93,569,466 (GRCm39)		probably benign	Het
Nudt2	G	A	4: 41,480,288 (GRCm39)	R57Q	probably damaging	Het
Obsl1	A	C	1: 75,482,027 (GRCm39)	L281W	probably benign	Het
Olfm4	A	T	14: 80,255,607 (GRCm39)	N250I	unknown	Het
Or10aa3	T	A	1: 173,878,413 (GRCm39)	V158E	probably damaging	Het
Or1x6	G	A	11: 50,938,938 (GRCm39)	M1I	probably null	Het
Or2m13	T	A	16: 19,226,173 (GRCm39)	I198F	probably benign	Het
Or2r2	T	C	6: 42,463,903 (GRCm39)	S75G	probably damaging	Het
Or5p50	A	G	7: 107,422,628 (GRCm39)	I16T	possibly damaging	Het
Pappa	A	T	4: 65,074,426 (GRCm39)	T327S	probably damaging	Het
Pcdhb4	T	G	18: 37,440,714 (GRCm39)	M8R	probably benign	Het
Phf21b	T	A	15: 84,671,563 (GRCm39)	I444F	probably damaging	Het
Pkd1l2	A	C	8: 117,769,037 (GRCm39)	V1205G	probably benign	Het
Plec	T	C	15: 76,060,232 (GRCm39)	Y3235C	probably damaging	Het
Pnmt	C	T	11: 98,278,832 (GRCm39)	T266I	possibly damaging	Het
Ppfia2	T	A	10: 106,655,220 (GRCm39)	D262E	probably benign	Het
Rabggta	A	T	14: 55,955,913 (GRCm39)	L448Q	probably damaging	Het
Rap1gds1	C	T	3: 138,661,177 (GRCm39)	R449H	probably benign	Het
Rictor	T	A	15: 6,801,610 (GRCm39)		probably benign	Het
Rttn	T	C	18: 89,027,556 (GRCm39)	F557S	probably damaging	Het
Ryr3	A	G	2: 112,465,748 (GRCm39)	C4809R	probably damaging	Het
Sacs	A	C	14: 61,441,992 (GRCm39)	D1346A	probably benign	Het
Slain1	T	A	14: 103,923,191 (GRCm39)	S261T	probably damaging	Het
Slc22a4	C	T	11: 53,881,664 (GRCm39)	W351*	probably null	Het
Smpd3	C	T	8: 106,984,058 (GRCm39)	G554S	probably benign	Het
Spag17	C	T	3: 99,934,942 (GRCm39)	S716F	possibly damaging	Het
Spata31f1e	C	T	4: 42,792,546 (GRCm39)	G529S	probably benign	Het
Spg11	C	T	2: 121,900,413 (GRCm39)	M1546I	probably benign	Het
Spmip11	T	G	15: 98,486,493 (GRCm39)	S88A	possibly damaging	Het
Stac3	C	T	10: 127,339,454 (GRCm39)	L117F	probably damaging	Het
Surf6	A	G	2: 26,782,536 (GRCm39)	W264R	probably damaging	Het
Taar7e	T	C	10: 23,913,810 (GRCm39)	V100A	probably damaging	Het
Tenm3	T	C	8: 48,795,688 (GRCm39)	H534R	probably damaging	Het
Tinagl1	C	A	4: 130,067,823 (GRCm39)	R57L	probably damaging	Het
Tnfrsf11a	G	A	1: 105,754,854 (GRCm39)	A309T	possibly damaging	Het
Traf6	A	G	2: 101,527,333 (GRCm39)	Y361C	possibly damaging	Het
Ttn	A	T	2: 76,777,334 (GRCm39)		probably benign	Het
Ufl1	A	T	4: 25,254,778 (GRCm39)	Y559*	probably null	Het
Upk1b	A	T	16: 38,607,570 (GRCm39)	N52K	probably damaging	Het
Uqcrb	A	G	13: 67,053,363 (GRCm39)	S5P	probably benign	Het
Use1	A	G	8: 71,819,688 (GRCm39)	Y3C	unknown	Het
Usp9y	T	A	Y: 1,434,993 (GRCm39)	I279L	possibly damaging	Het
Vmn1r142	A	G	7: 21,862,796 (GRCm39)	L222P	probably damaging	Het
Vmn1r184	A	C	7: 25,967,177 (GRCm39)	N308H	probably benign	Het
Vmn2r14	C	A	5: 109,367,893 (GRCm39)	M366I	probably benign	Het
Vmn2r73	G	T	7: 85,521,904 (GRCm39)	S145Y	probably damaging	Het
Wdfy1	A	T	1: 79,692,697 (GRCm39)	W207R	probably damaging	Het
Zbtb38	A	T	9: 96,569,100 (GRCm39)	N661K	probably benign	Het
Zkscan3	G	T	13: 21,572,383 (GRCm39)	H416Q	possibly damaging	Het

Other mutations in Krt78

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00089:Krt78	APN	15	101,855,945 (GRCm39)	missense	probably benign	0.28
IGL01358:Krt78	APN	15	101,854,698 (GRCm39)	missense	probably benign	0.18
IGL01723:Krt78	APN	15	101,860,233 (GRCm39)	missense	possibly damaging	0.65
IGL01743:Krt78	APN	15	101,859,333 (GRCm39)	missense	probably benign	0.06
IGL01778:Krt78	APN	15	101,859,402 (GRCm39)	missense	probably damaging	1.00
IGL01792:Krt78	APN	15	101,855,085 (GRCm39)	missense	probably benign	0.01
IGL02271:Krt78	APN	15	101,857,028 (GRCm39)	missense	probably benign	0.02
IGL02481:Krt78	APN	15	101,856,853 (GRCm39)	splice site	probably benign
IGL02494:Krt78	APN	15	101,862,486 (GRCm39)	missense	probably benign	0.00
IGL02708:Krt78	APN	15	101,861,842 (GRCm39)	missense	possibly damaging	0.88
IGL02747:Krt78	APN	15	101,858,819 (GRCm39)	splice site	probably benign
IGL02997:Krt78	APN	15	101,855,598 (GRCm39)	missense	probably benign	0.11
IGL03350:Krt78	APN	15	101,854,952 (GRCm39)	missense	probably benign	0.02
IGL03410:Krt78	APN	15	101,862,421 (GRCm39)	missense	probably damaging	0.99
PIT4812001:Krt78	UTSW	15	101,856,504 (GRCm39)	missense	probably damaging	1.00
R0090:Krt78	UTSW	15	101,856,272 (GRCm39)	missense	probably benign	0.35
R0513:Krt78	UTSW	15	101,859,384 (GRCm39)	missense	probably damaging	1.00
R0908:Krt78	UTSW	15	101,859,336 (GRCm39)	missense	probably damaging	1.00
R1067:Krt78	UTSW	15	101,854,896 (GRCm39)	nonsense	probably null
R1070:Krt78	UTSW	15	101,854,728 (GRCm39)	missense	possibly damaging	0.86
R1194:Krt78	UTSW	15	101,860,221 (GRCm39)	missense	probably damaging	0.99
R1213:Krt78	UTSW	15	101,860,245 (GRCm39)	missense	probably benign	0.10
R1467:Krt78	UTSW	15	101,854,728 (GRCm39)	missense	possibly damaging	0.86
R1467:Krt78	UTSW	15	101,854,728 (GRCm39)	missense	possibly damaging	0.86
R1612:Krt78	UTSW	15	101,860,279 (GRCm39)	splice site	probably null
R1750:Krt78	UTSW	15	101,854,812 (GRCm39)	missense	probably benign	0.33
R1796:Krt78	UTSW	15	101,859,300 (GRCm39)	missense	probably damaging	1.00
R1863:Krt78	UTSW	15	101,855,004 (GRCm39)	missense	possibly damaging	0.53
R1901:Krt78	UTSW	15	101,855,398 (GRCm39)	nonsense	probably null
R1902:Krt78	UTSW	15	101,855,398 (GRCm39)	nonsense	probably null
R1975:Krt78	UTSW	15	101,854,603 (GRCm39)	makesense	probably null
R2105:Krt78	UTSW	15	101,855,849 (GRCm39)	missense	possibly damaging	0.93
R2418:Krt78	UTSW	15	101,855,069 (GRCm39)	missense	probably benign
R2421:Krt78	UTSW	15	101,855,699 (GRCm39)	missense	probably damaging	0.96
R2422:Krt78	UTSW	15	101,855,699 (GRCm39)	missense	probably damaging	0.96
R2443:Krt78	UTSW	15	101,855,033 (GRCm39)	missense	probably damaging	1.00
R2897:Krt78	UTSW	15	101,855,541 (GRCm39)	missense	probably benign
R4422:Krt78	UTSW	15	101,856,375 (GRCm39)	missense	probably benign	0.13
R4424:Krt78	UTSW	15	101,856,375 (GRCm39)	missense	probably benign	0.13
R4425:Krt78	UTSW	15	101,856,375 (GRCm39)	missense	probably benign	0.13
R4583:Krt78	UTSW	15	101,855,055 (GRCm39)	missense	possibly damaging	0.53
R4752:Krt78	UTSW	15	101,856,637 (GRCm39)	missense	probably benign	0.05
R4927:Krt78	UTSW	15	101,855,334 (GRCm39)	missense	probably benign	0.02
R5129:Krt78	UTSW	15	101,856,015 (GRCm39)	missense	possibly damaging	0.70
R5391:Krt78	UTSW	15	101,860,263 (GRCm39)	nonsense	probably null
R5575:Krt78	UTSW	15	101,855,787 (GRCm39)	nonsense	probably null
R5617:Krt78	UTSW	15	101,856,044 (GRCm39)	missense	probably damaging	0.99
R5806:Krt78	UTSW	15	101,858,937 (GRCm39)	missense	probably damaging	1.00
R5906:Krt78	UTSW	15	101,857,030 (GRCm39)	missense	probably damaging	0.98
R5993:Krt78	UTSW	15	101,858,884 (GRCm39)	missense	probably damaging	1.00
R6520:Krt78	UTSW	15	101,860,206 (GRCm39)	missense	probably benign	0.26
R6531:Krt78	UTSW	15	101,860,708 (GRCm39)	missense	probably benign	0.03
R6587:Krt78	UTSW	15	101,860,704 (GRCm39)	missense	probably benign	0.10
R6749:Krt78	UTSW	15	101,859,358 (GRCm39)	missense	probably damaging	1.00
R7126:Krt78	UTSW	15	101,856,871 (GRCm39)	missense	probably damaging	1.00
R7158:Krt78	UTSW	15	101,860,241 (GRCm39)	missense	probably benign	0.17
R7229:Krt78	UTSW	15	101,855,829 (GRCm39)	missense	probably benign	0.01
R7523:Krt78	UTSW	15	101,855,036 (GRCm39)	missense	not run
R7638:Krt78	UTSW	15	101,859,318 (GRCm39)	missense	probably damaging	1.00
R7879:Krt78	UTSW	15	101,856,624 (GRCm39)	missense	probably benign	0.22
R8013:Krt78	UTSW	15	101,856,977 (GRCm39)	missense	probably damaging	0.99
R8085:Krt78	UTSW	15	101,855,715 (GRCm39)	missense	possibly damaging	0.91
R8209:Krt78	UTSW	15	101,855,480 (GRCm39)	missense	possibly damaging	0.56
R8226:Krt78	UTSW	15	101,855,480 (GRCm39)	missense	possibly damaging	0.56
R8309:Krt78	UTSW	15	101,854,922 (GRCm39)	missense	probably benign	0.00
R8728:Krt78	UTSW	15	101,856,225 (GRCm39)	missense	probably benign	0.11
R8729:Krt78	UTSW	15	101,855,455 (GRCm39)	missense	probably damaging	0.98
R8887:Krt78	UTSW	15	101,861,746 (GRCm39)	missense	probably damaging	1.00
X0018:Krt78	UTSW	15	101,860,235 (GRCm39)	missense	possibly damaging	0.96
Z1088:Krt78	UTSW	15	101,855,766 (GRCm39)	missense	possibly damaging	0.91
Z1177:Krt78	UTSW	15	101,856,095 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- ATATTCTCTTCCAGGCACGG -3'
(R):5'- AATATGGAGGCCAGGTGACC -3'

Sequencing Primer
(F):5'- TCTTCCAGGCACGGTCACC -3'
(R):5'- CAGGTGACCGTGCCTAGAAG -3'

Posted On

2021-10-11