Incidental Mutation 'R9262:Rbm12'
ID 702297
Institutional Source Beutler Lab
Gene Symbol Rbm12
Ensembl Gene ENSMUSG00000089824
Gene Name RNA binding motif protein 12
Synonyms SWAN, 9430070C08Rik, 5730420G12Rik
MMRRC Submission
Accession Numbers
Essential gene? Probably essential (E-score: 0.902) question?
Stock # R9262 (G1)
Quality Score 225.009
Status Validated
Chromosome 2
Chromosomal Location 155933876-155953847 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 155939317 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Lysine at position 318 (N318K)
Ref Sequence ENSEMBL: ENSMUSP00000050461 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000059647] [ENSMUST00000079312] [ENSMUST00000109604] [ENSMUST00000109607] [ENSMUST00000109608] [ENSMUST00000128499] [ENSMUST00000131377] [ENSMUST00000132494] [ENSMUST00000133921] [ENSMUST00000136296] [ENSMUST00000138068] [ENSMUST00000142960] [ENSMUST00000147627] [ENSMUST00000153634] [ENSMUST00000154889] [ENSMUST00000183518] [ENSMUST00000183972] [ENSMUST00000184152] [ENSMUST00000184265] [ENSMUST00000184899]
AlphaFold Q8R4X3
PDB Structure Solution structure of the RNA binding domain of RNA-binding protein 12 [SOLUTION NMR]
Predicted Effect possibly damaging
Transcript: ENSMUST00000059647
AA Change: N318K

PolyPhen 2 Score 0.490 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000050461
Gene: ENSMUSG00000089824
AA Change: N318K

DomainStartEndE-ValueType
Pfam:RRM_6 5 70 5e-5 PFAM
low complexity region 98 116 N/A INTRINSIC
low complexity region 161 260 N/A INTRINSIC
RRM 305 375 1.05e-1 SMART
RRM 431 503 2.73e-7 SMART
RRM 545 617 8.73e-6 SMART
low complexity region 655 767 N/A INTRINSIC
low complexity region 781 812 N/A INTRINSIC
low complexity region 866 908 N/A INTRINSIC
RRM 917 990 1.03e-7 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000079312
SMART Domains Protein: ENSMUSP00000078292
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
C2 137 242 8.76e-12 SMART
VWA 282 468 8.96e-2 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000109604
AA Change: N318K

PolyPhen 2 Score 0.490 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000105233
Gene: ENSMUSG00000089824
AA Change: N318K

DomainStartEndE-ValueType
Pfam:RRM_6 5 70 1.1e-5 PFAM
low complexity region 98 116 N/A INTRINSIC
low complexity region 161 260 N/A INTRINSIC
RRM 305 375 1.05e-1 SMART
RRM 431 503 2.73e-7 SMART
RRM 545 617 8.73e-6 SMART
low complexity region 655 767 N/A INTRINSIC
low complexity region 781 812 N/A INTRINSIC
low complexity region 866 908 N/A INTRINSIC
RRM 917 990 1.03e-7 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000109607
SMART Domains Protein: ENSMUSP00000105236
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
C2 137 242 8.76e-12 SMART
VWA 282 484 9.5e-15 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000109608
SMART Domains Protein: ENSMUSP00000105237
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
C2 137 242 8.76e-12 SMART
VWA 282 484 9.5e-15 SMART
Predicted Effect
SMART Domains Protein: ENSMUSP00000114923
Gene: ENSMUSG00000098950
AA Change: N229K

DomainStartEndE-ValueType
low complexity region 10 28 N/A INTRINSIC
low complexity region 73 172 N/A INTRINSIC
RRM 217 287 1.05e-1 SMART
RRM 343 415 2.73e-7 SMART
RRM 457 529 8.73e-6 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000128499
SMART Domains Protein: ENSMUSP00000118067
Gene: ENSMUSG00000089824

DomainStartEndE-ValueType
PDB:2DB1|A 2 86 6e-8 PDB
Blast:RRM_2 4 72 1e-30 BLAST
low complexity region 98 116 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000131377
SMART Domains Protein: ENSMUSP00000120731
Gene: ENSMUSG00000089824

DomainStartEndE-ValueType
PDB:2DB1|A 2 86 1e-7 PDB
Blast:RRM_2 4 72 4e-29 BLAST
low complexity region 98 116 N/A INTRINSIC
low complexity region 161 260 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000132494
AA Change: N318K

PolyPhen 2 Score 0.430 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000139175
Gene: ENSMUSG00000098950
AA Change: N318K

DomainStartEndE-ValueType
Pfam:RRM_6 5 70 1.5e-5 PFAM
low complexity region 98 116 N/A INTRINSIC
low complexity region 161 260 N/A INTRINSIC
RRM 305 375 1.05e-1 SMART
RRM 431 503 2.73e-7 SMART
RRM 545 617 8.73e-6 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000133921
SMART Domains Protein: ENSMUSP00000122644
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
Pfam:C2 139 178 3.3e-3 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000136296
SMART Domains Protein: ENSMUSP00000122994
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
C2 123 218 7.88e-5 SMART
Pfam:Copine 279 378 2.3e-41 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000138068
SMART Domains Protein: ENSMUSP00000119519
Gene: ENSMUSG00000089824

DomainStartEndE-ValueType
PDB:2DB1|A 2 86 5e-8 PDB
Blast:RRM_2 4 72 1e-30 BLAST
low complexity region 98 116 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000142960
SMART Domains Protein: ENSMUSP00000121299
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 2.4e-11 SMART
C2 123 206 3e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000147627
SMART Domains Protein: ENSMUSP00000116982
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
C2 137 242 8.76e-12 SMART
Pfam:Copine 303 350 1.3e-16 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000153634
SMART Domains Protein: ENSMUSP00000115167
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
C2 123 218 7.88e-5 SMART
Pfam:Copine 279 325 4.1e-16 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000154889
SMART Domains Protein: ENSMUSP00000118140
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000159952
SMART Domains Protein: ENSMUSP00000124101
Gene: ENSMUSG00000098950

DomainStartEndE-ValueType
SCOP:d1eg5a_ 3 82 2e-15 SMART
PDB:1P3W|A 3 86 3e-34 PDB
low complexity region 93 106 N/A INTRINSIC
Blast:RRM_2 124 160 2e-14 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000160165
SMART Domains Protein: ENSMUSP00000124858
Gene: ENSMUSG00000098950

DomainStartEndE-ValueType
PDB:1P3W|A 3 28 1e-6 PDB
low complexity region 36 50 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000162612
SMART Domains Protein: ENSMUSP00000125190
Gene: ENSMUSG00000098950

DomainStartEndE-ValueType
SCOP:d1eg5a_ 3 82 1e-15 SMART
PDB:1P3W|A 3 86 2e-34 PDB
low complexity region 93 106 N/A INTRINSIC
Blast:RRM_2 124 161 1e-14 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000183518
SMART Domains Protein: ENSMUSP00000139010
Gene: ENSMUSG00000098950

DomainStartEndE-ValueType
Blast:RRM_2 4 40 4e-15 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000183972
Predicted Effect probably benign
Transcript: ENSMUST00000184152
SMART Domains Protein: ENSMUSP00000139035
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000184265
SMART Domains Protein: ENSMUSP00000138888
Gene: ENSMUSG00000074643

DomainStartEndE-ValueType
C2 6 112 3.64e-9 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000184899
SMART Domains Protein: ENSMUSP00000139177
Gene: ENSMUSG00000098950

DomainStartEndE-ValueType
Blast:RRM_2 4 54 2e-25 BLAST
SCOP:d2u1a__ 9 68 6e-3 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.6%
Validation Efficiency 97% (73/75)
MGI Phenotype FUNCTION: This gene encodes a protein that contains several RNA-binding motifs, potential transmembrane domains, and proline-rich regions. This gene and the gene for copine I overlap at map location 2 H2. Two alternatively spliced transcript variants have been identified for this gene. Both variants encode the same protein. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for an ENU mutation exhibit open neural tube and embryonic growth retardation. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 75 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933409G03Rik A T 2: 68,443,375 (GRCm39) H192L unknown Het
Abca4 T A 3: 121,964,639 (GRCm39) C2149S probably damaging Het
Abl2 G A 1: 156,469,820 (GRCm39) G1028D possibly damaging Het
Adgre1 A G 17: 57,754,941 (GRCm39) T680A probably damaging Het
Amn G A 12: 111,237,585 (GRCm39) W10* probably null Het
Ankhd1 G T 18: 36,765,799 (GRCm39) V140F Het
Asnsd1 A T 1: 53,383,934 (GRCm39) N613K probably benign Het
Bbs2 A T 8: 94,807,543 (GRCm39) I417N probably damaging Het
Cad T A 5: 31,225,009 (GRCm39) W971R probably null Het
Cand2 A T 6: 115,759,730 (GRCm39) I134F probably benign Het
Ccdc154 C A 17: 25,389,160 (GRCm39) H453N probably damaging Het
Ccdc168 A G 1: 44,096,269 (GRCm39) S1610P possibly damaging Het
Ccdc7a T A 8: 129,486,277 (GRCm39) H1601L possibly damaging Het
Ccdc9 A C 7: 16,012,400 (GRCm39) S261A probably benign Het
Cdkl3 T A 11: 51,916,702 (GRCm39) S277T probably benign Het
Cipc T A 12: 86,999,497 (GRCm39) Y8* probably null Het
Cramp1 A G 17: 25,232,920 (GRCm39) S27P probably damaging Het
Csf1r A T 18: 61,243,406 (GRCm39) M141L probably benign Het
Csf2rb2 G T 15: 78,168,535 (GRCm39) F873L probably damaging Het
Dchs1 G A 7: 105,404,833 (GRCm39) R2570W probably damaging Het
Dmxl1 A T 18: 49,976,919 (GRCm39) N94Y probably benign Het
Dnajc10 A G 2: 80,176,965 (GRCm39) K640R probably benign Het
Epha8 A C 4: 136,658,995 (GRCm39) H886Q probably benign Het
Fcgbp G C 7: 27,819,952 (GRCm39) D2560H probably damaging Het
Fry T G 5: 150,305,109 (GRCm39) F605V probably damaging Het
Fsip2 A G 2: 82,807,662 (GRCm39) N1327S probably benign Het
Gm12117 T C 11: 33,226,001 (GRCm39) T112A probably benign Het
Gm3604 A T 13: 62,517,697 (GRCm39) N220K probably damaging Het
Gm572 T C 4: 148,735,652 (GRCm39) V27A probably benign Het
Gpr39 A G 1: 125,800,524 (GRCm39) K425R probably benign Het
Heatr3 A G 8: 88,883,097 (GRCm39) D349G probably benign Het
Hip1 A G 5: 135,478,541 (GRCm39) S248P probably damaging Het
Itga11 A G 9: 62,659,678 (GRCm39) probably benign Het
Itga3 C T 11: 94,956,625 (GRCm39) V210I probably benign Het
Jmjd1c T C 10: 67,083,793 (GRCm39) I2173T probably benign Het
Klf13 G A 7: 63,574,456 (GRCm39) Q21* probably null Het
Kmt2a A T 9: 44,731,222 (GRCm39) S3032T probably benign Het
Krt34 T C 11: 99,930,851 (GRCm39) R184G probably benign Het
Krtap16-1 T C 11: 99,876,994 (GRCm39) T137A probably benign Het
Ldc1 A G 4: 130,114,153 (GRCm39) V88A possibly damaging Het
Mgam T C 6: 40,723,422 (GRCm39) probably null Het
Mog T C 17: 37,325,648 (GRCm39) T196A possibly damaging Het
Ms4a6d T C 19: 11,579,216 (GRCm39) Y87C possibly damaging Het
Ndrg4 C T 8: 96,435,812 (GRCm39) probably benign Het
Nsd1 T A 13: 55,394,871 (GRCm39) M927K possibly damaging Het
Or11l3 T A 11: 58,516,282 (GRCm39) M197L probably benign Het
Or4a73 G T 2: 89,421,435 (GRCm39) T8K probably damaging Het
Ovgp1 T C 3: 105,893,883 (GRCm39) probably benign Het
Pcdhac2 A G 18: 37,279,095 (GRCm39) R692G possibly damaging Het
Pcsk4 T A 10: 80,160,864 (GRCm39) S321C probably damaging Het
Pi4ka A G 16: 17,120,859 (GRCm39) F1292L Het
Pigv G T 4: 133,397,110 (GRCm39) P6Q possibly damaging Het
Pkhd1 A C 1: 20,618,351 (GRCm39) S927A probably benign Het
Pnpla3 A T 15: 84,055,363 (GRCm39) I90F probably benign Het
Pole C A 5: 110,473,422 (GRCm39) L1739I probably damaging Het
Pole T A 5: 110,473,423 (GRCm39) L1739H probably damaging Het
Rpl18a A T 8: 71,348,179 (GRCm39) L168Q probably benign Het
Ryr2 T C 13: 11,765,854 (GRCm39) N1294S probably damaging Het
Sema5b T C 16: 35,453,223 (GRCm39) L98P possibly damaging Het
Slco1a8 G T 6: 141,926,594 (GRCm39) F597L probably damaging Het
Smg7 A G 1: 152,721,262 (GRCm39) V650A probably damaging Het
Spata31d1e T C 13: 59,890,402 (GRCm39) M473V probably benign Het
Strada C T 11: 106,075,444 (GRCm39) R13Q probably damaging Het
Sun1 T C 5: 139,200,918 (GRCm39) S37P unknown Het
Syce1l T C 8: 114,380,738 (GRCm39) probably null Het
Tdg T A 10: 82,480,507 (GRCm39) F263L probably damaging Het
Tead3 G T 17: 28,560,495 (GRCm39) S36R probably benign Het
Timm44 A G 8: 4,310,621 (GRCm39) L377P probably damaging Het
Tk1 C T 11: 117,716,581 (GRCm39) V9M probably benign Het
Trim36 A G 18: 46,300,506 (GRCm39) Y722H probably benign Het
Ttn A T 2: 76,640,232 (GRCm39) M13792K possibly damaging Het
Unc80 A G 1: 66,594,411 (GRCm39) probably benign Het
Usp46 G T 5: 74,189,965 (GRCm39) A133E probably benign Het
Wnk2 T A 13: 49,221,430 (GRCm39) R1240S probably benign Het
Zfp821 G A 8: 110,450,982 (GRCm39) R325Q probably damaging Het
Other mutations in Rbm12
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00578:Rbm12 APN 2 155,937,961 (GRCm39) intron probably benign
IGL01307:Rbm12 APN 2 155,937,302 (GRCm39) intron probably benign
IGL02474:Rbm12 APN 2 155,940,017 (GRCm39) missense probably damaging 1.00
IGL02596:Rbm12 APN 2 155,937,480 (GRCm39) intron probably benign
IGL02601:Rbm12 APN 2 155,937,480 (GRCm39) intron probably benign
IGL02603:Rbm12 APN 2 155,937,480 (GRCm39) intron probably benign
IGL02608:Rbm12 APN 2 155,937,818 (GRCm39) intron probably benign
IGL02679:Rbm12 APN 2 155,937,480 (GRCm39) intron probably benign
IGL02691:Rbm12 APN 2 155,937,480 (GRCm39) intron probably benign
IGL02693:Rbm12 APN 2 155,937,480 (GRCm39) intron probably benign
IGL02702:Rbm12 APN 2 155,937,480 (GRCm39) intron probably benign
IGL02703:Rbm12 APN 2 155,937,480 (GRCm39) intron probably benign
IGL03407:Rbm12 APN 2 155,939,484 (GRCm39) nonsense probably null
IGL02991:Rbm12 UTSW 2 155,937,480 (GRCm39) intron probably benign
R0310:Rbm12 UTSW 2 155,937,644 (GRCm39) intron probably benign
R1213:Rbm12 UTSW 2 155,939,412 (GRCm39) nonsense probably null
R1280:Rbm12 UTSW 2 155,938,749 (GRCm39) missense probably damaging 1.00
R1511:Rbm12 UTSW 2 155,939,456 (GRCm39) missense probably damaging 0.98
R1951:Rbm12 UTSW 2 155,939,133 (GRCm39) missense probably damaging 0.99
R2131:Rbm12 UTSW 2 155,937,430 (GRCm39) nonsense probably null
R2133:Rbm12 UTSW 2 155,937,430 (GRCm39) nonsense probably null
R2883:Rbm12 UTSW 2 155,938,995 (GRCm39) missense probably damaging 0.98
R4760:Rbm12 UTSW 2 155,939,048 (GRCm39) missense probably damaging 0.99
R4783:Rbm12 UTSW 2 155,938,484 (GRCm39) missense possibly damaging 0.95
R4784:Rbm12 UTSW 2 155,938,484 (GRCm39) missense possibly damaging 0.95
R4785:Rbm12 UTSW 2 155,938,484 (GRCm39) missense possibly damaging 0.95
R4794:Rbm12 UTSW 2 155,937,489 (GRCm39) intron probably benign
R5057:Rbm12 UTSW 2 155,938,806 (GRCm39) missense probably benign 0.18
R5383:Rbm12 UTSW 2 155,945,285 (GRCm39) utr 5 prime probably benign
R5599:Rbm12 UTSW 2 155,938,713 (GRCm39) nonsense probably null
R5979:Rbm12 UTSW 2 155,939,679 (GRCm39) intron probably benign
R6083:Rbm12 UTSW 2 155,939,646 (GRCm39) intron probably benign
R6769:Rbm12 UTSW 2 155,939,375 (GRCm39) missense possibly damaging 0.95
R6771:Rbm12 UTSW 2 155,939,375 (GRCm39) missense possibly damaging 0.95
R7233:Rbm12 UTSW 2 155,937,894 (GRCm39) missense unknown
R7424:Rbm12 UTSW 2 155,939,223 (GRCm39) missense possibly damaging 0.57
R7483:Rbm12 UTSW 2 155,940,138 (GRCm39) missense unknown
R7643:Rbm12 UTSW 2 155,940,137 (GRCm39) missense unknown
R7848:Rbm12 UTSW 2 155,938,136 (GRCm39) missense probably benign 0.01
R8556:Rbm12 UTSW 2 155,938,481 (GRCm39) missense probably damaging 1.00
R8866:Rbm12 UTSW 2 155,938,693 (GRCm39) nonsense probably null
R8875:Rbm12 UTSW 2 155,938,841 (GRCm39) missense probably damaging 1.00
R9054:Rbm12 UTSW 2 155,937,481 (GRCm39) missense unknown
R9115:Rbm12 UTSW 2 155,938,030 (GRCm39) intron probably benign
R9179:Rbm12 UTSW 2 155,938,463 (GRCm39) missense probably benign 0.05
R9495:Rbm12 UTSW 2 155,939,738 (GRCm39) missense unknown
R9656:Rbm12 UTSW 2 155,940,121 (GRCm39) missense unknown
R9701:Rbm12 UTSW 2 155,938,166 (GRCm39) missense probably benign 0.01
R9759:Rbm12 UTSW 2 155,938,546 (GRCm39) missense probably benign 0.03
RF001:Rbm12 UTSW 2 155,937,995 (GRCm39) intron probably benign
RF021:Rbm12 UTSW 2 155,938,026 (GRCm39) intron probably benign
RF028:Rbm12 UTSW 2 155,938,050 (GRCm39) frame shift probably null
RF029:Rbm12 UTSW 2 155,938,015 (GRCm39) intron probably benign
RF033:Rbm12 UTSW 2 155,938,002 (GRCm39) intron probably benign
RF033:Rbm12 UTSW 2 155,938,000 (GRCm39) intron probably benign
RF033:Rbm12 UTSW 2 155,937,999 (GRCm39) intron probably benign
RF033:Rbm12 UTSW 2 155,938,004 (GRCm39) intron probably benign
RF033:Rbm12 UTSW 2 155,938,003 (GRCm39) intron probably benign
RF038:Rbm12 UTSW 2 155,938,026 (GRCm39) intron probably benign
Predicted Primers PCR Primer
(F):5'- GATATGACCTCCAGCAGCTAC -3'
(R):5'- CTGCTGGAATGAATGGCTCTG -3'

Sequencing Primer
(F):5'- CTCTGTGGCAGGACTGACTTC -3'
(R):5'- TGGAGCACCTATCGGTCTGAAC -3'
Posted On 2022-03-25