Incidental Mutation 'R9443:Mbd5'
ID 713720
Institutional Source Beutler Lab
Gene Symbol Mbd5
Ensembl Gene ENSMUSG00000036792
Gene Name methyl-CpG binding domain protein 5
Synonyms OTTMUSG00000012483, 9430004D19Rik, C030040A15Rik
MMRRC Submission
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R9443 (G1)
Quality Score 225.009
Status Not validated
Chromosome 2
Chromosomal Location 48839511-49209702 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 49146712 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Arginine at position 307 (S307R)
Ref Sequence ENSEMBL: ENSMUSP00000036847 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047413] [ENSMUST00000112745] [ENSMUST00000112754]
AlphaFold B1AYB6
Predicted Effect probably damaging
Transcript: ENSMUST00000047413
AA Change: S307R

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000036847
Gene: ENSMUSG00000036792
AA Change: S307R

DomainStartEndE-ValueType
low complexity region 3 15 N/A INTRINSIC
Blast:MBD 24 77 9e-11 BLAST
low complexity region 332 342 N/A INTRINSIC
low complexity region 429 443 N/A INTRINSIC
low complexity region 459 467 N/A INTRINSIC
low complexity region 499 512 N/A INTRINSIC
low complexity region 535 546 N/A INTRINSIC
low complexity region 571 613 N/A INTRINSIC
low complexity region 699 719 N/A INTRINSIC
low complexity region 841 852 N/A INTRINSIC
low complexity region 912 932 N/A INTRINSIC
low complexity region 934 948 N/A INTRINSIC
low complexity region 992 1010 N/A INTRINSIC
low complexity region 1020 1035 N/A INTRINSIC
low complexity region 1112 1136 N/A INTRINSIC
low complexity region 1173 1184 N/A INTRINSIC
low complexity region 1206 1229 N/A INTRINSIC
low complexity region 1552 1562 N/A INTRINSIC
SCOP:d1khca_ 1615 1718 2e-17 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000112745
AA Change: S307R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000108365
Gene: ENSMUSG00000036792
AA Change: S307R

DomainStartEndE-ValueType
low complexity region 3 15 N/A INTRINSIC
Blast:MBD 24 77 4e-11 BLAST
low complexity region 332 342 N/A INTRINSIC
low complexity region 429 443 N/A INTRINSIC
low complexity region 459 467 N/A INTRINSIC
low complexity region 499 512 N/A INTRINSIC
low complexity region 535 546 N/A INTRINSIC
low complexity region 571 613 N/A INTRINSIC
low complexity region 699 719 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000112754
AA Change: S307R

PolyPhen 2 Score 0.827 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000108374
Gene: ENSMUSG00000036792
AA Change: S307R

DomainStartEndE-ValueType
low complexity region 3 15 N/A INTRINSIC
Blast:MBD 24 77 8e-11 BLAST
low complexity region 332 342 N/A INTRINSIC
low complexity region 429 443 N/A INTRINSIC
low complexity region 459 467 N/A INTRINSIC
low complexity region 499 512 N/A INTRINSIC
low complexity region 535 546 N/A INTRINSIC
low complexity region 571 613 N/A INTRINSIC
low complexity region 699 719 N/A INTRINSIC
low complexity region 841 852 N/A INTRINSIC
low complexity region 912 932 N/A INTRINSIC
low complexity region 934 948 N/A INTRINSIC
low complexity region 976 999 N/A INTRINSIC
low complexity region 1322 1332 N/A INTRINSIC
SCOP:d1khca_ 1385 1488 4e-17 SMART
Predicted Effect
SMART Domains Protein: ENSMUSP00000119317
Gene: ENSMUSG00000036792
AA Change: S46R

DomainStartEndE-ValueType
low complexity region 72 82 N/A INTRINSIC
low complexity region 169 183 N/A INTRINSIC
low complexity region 199 207 N/A INTRINSIC
low complexity region 239 252 N/A INTRINSIC
low complexity region 275 286 N/A INTRINSIC
low complexity region 311 353 N/A INTRINSIC
low complexity region 439 459 N/A INTRINSIC
low complexity region 581 592 N/A INTRINSIC
low complexity region 652 672 N/A INTRINSIC
low complexity region 674 688 N/A INTRINSIC
low complexity region 732 750 N/A INTRINSIC
low complexity region 760 775 N/A INTRINSIC
low complexity region 852 876 N/A INTRINSIC
low complexity region 913 924 N/A INTRINSIC
low complexity region 946 969 N/A INTRINSIC
low complexity region 1011 1022 N/A INTRINSIC
low complexity region 1056 1064 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000199257
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.4%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the methyl-CpG-binding domain (MBD) family. The MBD consists of about 70 residues and is the minimal region required for a methyl-CpG-binding protein binding specifically to methylated DNA. In addition to the MBD domain, this protein contains a PWWP domain (Pro-Trp-Trp-Pro motif), which consists of 100-150 amino acids and is found in numerous proteins that are involved in cell division, growth and differentiation. Mutations in this gene cause mental retardation autosomal dominant type 1. Haploinsufficiency of this gene is associated with a syndrome involving microcephaly, intellectual disabilities, severe speech impairment, and seizures. Alternatively spliced transcript variants have been found, but their full-length nature is not determined. [provided by RefSeq, Mar 2010]
PHENOTYPE: Mice homozgyous for a knock-out allele exhibit severe postnatal growth retardation leading to lethality by P22, decreased body, brain and liver weights, reduced IGF-I and GH levels, and abnormal glucose homeostasis. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 74 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adad1 T C 3: 37,146,140 (GRCm39) Y503H probably benign Het
Adck1 T C 12: 88,338,550 (GRCm39) probably null Het
Afap1l1 T C 18: 61,879,859 (GRCm39) D337G probably damaging Het
Afg1l G A 10: 42,189,587 (GRCm39) T448M probably damaging Het
Aqp6 T C 15: 99,499,409 (GRCm39) S41P Het
Atad5 T G 11: 80,023,388 (GRCm39) V1500G probably benign Het
B3galt9 C T 2: 34,728,623 (GRCm39) Q141* probably null Het
Btbd18 T A 2: 84,497,524 (GRCm39) D387E probably benign Het
Catsperd A G 17: 56,969,720 (GRCm39) N605D possibly damaging Het
Ccdc24 C T 4: 117,728,355 (GRCm39) V102I probably benign Het
Cenpe T A 3: 134,976,609 (GRCm39) D2405E probably damaging Het
Cfap46 T C 7: 139,195,023 (GRCm39) D2249G Het
Chrm1 A T 19: 8,655,550 (GRCm39) Y85F possibly damaging Het
Clstn3 C T 6: 124,428,358 (GRCm39) G465S probably damaging Het
Col7a1 G A 9: 108,785,059 (GRCm39) G262D unknown Het
Copg2 T C 6: 30,750,578 (GRCm39) T736A probably benign Het
Coro2b T C 9: 62,333,080 (GRCm39) E435G probably benign Het
Cp A T 3: 20,033,083 (GRCm39) I637F possibly damaging Het
Cpne7 T C 8: 123,853,411 (GRCm39) F239L probably damaging Het
Cstdc2 C T 2: 148,689,878 (GRCm39) E92K probably damaging Het
Cul2 T A 18: 3,434,041 (GRCm39) Y679* probably null Het
Dhx8 T C 11: 101,655,740 (GRCm39) Y1158H probably damaging Het
Eda G T X: 99,019,775 (GRCm39) R130L unknown Het
Elp6 T A 9: 110,150,004 (GRCm39) V265D probably damaging Het
Eomes A G 9: 118,313,640 (GRCm39) T562A Het
Fam187b A T 7: 30,677,067 (GRCm39) E192V probably damaging Het
Foxi1 T C 11: 34,155,671 (GRCm39) T320A probably benign Het
Gga1 C T 15: 78,765,247 (GRCm39) T18I possibly damaging Het
Grik4 T A 9: 42,571,037 (GRCm39) M223L probably benign Het
Hdac7 T C 15: 97,700,352 (GRCm39) N594S probably benign Het
Ifnar1 C T 16: 91,292,367 (GRCm39) P207L probably benign Het
Itpr3 T G 17: 27,324,523 (GRCm39) F1235C probably damaging Het
Klhdc4 A G 8: 122,523,765 (GRCm39) S484P possibly damaging Het
Kmt2c A G 5: 25,515,045 (GRCm39) S2933P probably damaging Het
Lama5 T A 2: 179,843,522 (GRCm39) H475L probably benign Het
Ly6g6f A G 17: 35,299,826 (GRCm39) L292P possibly damaging Het
Macf1 T A 4: 123,365,668 (GRCm39) Q3031L probably benign Het
Mertk T C 2: 128,604,029 (GRCm39) F388L probably benign Het
Mmp11 A G 10: 75,762,733 (GRCm39) F240S probably damaging Het
Mroh1 T A 15: 76,318,964 (GRCm39) F949I probably damaging Het
Mroh2b T C 15: 4,973,821 (GRCm39) L1113P probably damaging Het
Ndufv1 C A 19: 4,057,614 (GRCm39) A454S probably benign Het
Or13e8 A G 4: 43,696,591 (GRCm39) L194P probably damaging Het
Or56b2j T C 7: 104,352,821 (GRCm39) S16P probably benign Het
Or5d46 T A 2: 88,170,364 (GRCm39) W152R probably damaging Het
Osbpl1a C A 18: 13,031,244 (GRCm39) D329Y probably benign Het
Pcdh1 C A 18: 38,330,633 (GRCm39) R929L probably damaging Het
Phactr2 C T 10: 13,122,841 (GRCm39) R427K probably benign Het
Pip5k1c T C 10: 81,153,184 (GRCm39) Y670H probably damaging Het
Plbd1 T A 6: 136,611,555 (GRCm39) N241Y probably damaging Het
Pmvk C A 3: 89,374,956 (GRCm39) Q139K probably benign Het
Pramel30 T A 4: 144,059,678 (GRCm39) I463N possibly damaging Het
Rab3gap2 T A 1: 184,967,523 (GRCm39) C136S probably damaging Het
Rcor3 A G 1: 191,786,050 (GRCm39) V396A probably damaging Het
Rgs20 C A 1: 4,982,629 (GRCm39) E147* probably null Het
Rnf167 G T 11: 70,540,777 (GRCm39) L170F probably damaging Het
Scn9a T C 2: 66,395,553 (GRCm39) T164A probably damaging Het
Skic3 A G 13: 76,266,288 (GRCm39) Q210R probably benign Het
Slc52a3 A T 2: 151,846,299 (GRCm39) I87F probably benign Het
Sntn A T 14: 13,682,364 (GRCm38) M146L Het
Svep1 C T 4: 58,179,697 (GRCm39) R182H possibly damaging Het
Taar7f A G 10: 23,926,311 (GRCm39) I302V probably benign Het
Tm4sf20 T C 1: 82,746,090 (GRCm39) I17V probably benign Het
Traf1 T C 2: 34,836,748 (GRCm39) T270A probably benign Het
Trpm5 C T 7: 142,638,860 (GRCm39) E304K probably benign Het
Ttll8 T C 15: 88,809,863 (GRCm39) D311G possibly damaging Het
Unc79 T A 12: 103,037,035 (GRCm39) F608I probably damaging Het
Vmn2r11 A T 5: 109,195,159 (GRCm39) C722* probably null Het
Wdr7 A G 18: 63,853,407 (GRCm39) T36A probably damaging Het
Ybx2 C T 11: 69,831,188 (GRCm39) P261L Het
Zfp101 C T 17: 33,601,418 (GRCm39) V113I probably benign Het
Zfp260 T C 7: 29,804,249 (GRCm39) S50P probably benign Het
Zfp319 A T 8: 96,054,922 (GRCm39) F427Y probably benign Het
Zfp369 T C 13: 65,444,347 (GRCm39) S497P possibly damaging Het
Other mutations in Mbd5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01385:Mbd5 APN 2 49,140,233 (GRCm39) missense possibly damaging 0.92
IGL01481:Mbd5 APN 2 49,168,951 (GRCm39) missense possibly damaging 0.90
IGL01639:Mbd5 APN 2 49,162,320 (GRCm39) missense probably damaging 0.98
IGL02063:Mbd5 APN 2 49,164,779 (GRCm39) missense probably damaging 1.00
IGL02157:Mbd5 APN 2 49,168,987 (GRCm39) missense probably benign
IGL02510:Mbd5 APN 2 49,147,041 (GRCm39) missense probably benign 0.05
IGL02932:Mbd5 APN 2 49,169,460 (GRCm39) missense possibly damaging 0.66
IGL02973:Mbd5 APN 2 49,203,721 (GRCm39) missense probably damaging 0.99
IGL03189:Mbd5 APN 2 49,147,763 (GRCm39) missense probably damaging 0.98
BB003:Mbd5 UTSW 2 49,146,335 (GRCm39) missense probably damaging 0.99
BB013:Mbd5 UTSW 2 49,146,335 (GRCm39) missense probably damaging 0.99
F5770:Mbd5 UTSW 2 49,206,422 (GRCm39) missense probably damaging 0.99
R0391:Mbd5 UTSW 2 49,162,428 (GRCm39) missense possibly damaging 0.90
R0427:Mbd5 UTSW 2 49,169,091 (GRCm39) missense probably benign 0.27
R0544:Mbd5 UTSW 2 49,147,221 (GRCm39) missense possibly damaging 0.54
R0883:Mbd5 UTSW 2 49,146,701 (GRCm39) missense possibly damaging 0.94
R1072:Mbd5 UTSW 2 49,147,203 (GRCm39) missense probably damaging 1.00
R1099:Mbd5 UTSW 2 49,148,156 (GRCm39) missense probably benign 0.06
R1400:Mbd5 UTSW 2 49,164,788 (GRCm39) critical splice donor site probably null
R1497:Mbd5 UTSW 2 49,147,393 (GRCm39) missense possibly damaging 0.73
R1552:Mbd5 UTSW 2 49,162,946 (GRCm39) missense probably damaging 0.99
R1675:Mbd5 UTSW 2 49,146,230 (GRCm39) missense possibly damaging 0.90
R1710:Mbd5 UTSW 2 49,147,044 (GRCm39) missense probably benign 0.10
R2085:Mbd5 UTSW 2 49,169,323 (GRCm39) missense possibly damaging 0.90
R2252:Mbd5 UTSW 2 49,147,698 (GRCm39) missense probably damaging 1.00
R2473:Mbd5 UTSW 2 49,169,353 (GRCm39) missense probably benign 0.06
R3966:Mbd5 UTSW 2 49,162,082 (GRCm39) missense possibly damaging 0.46
R4278:Mbd5 UTSW 2 49,162,305 (GRCm39) missense probably damaging 0.97
R4348:Mbd5 UTSW 2 49,146,339 (GRCm39) missense probably benign
R4366:Mbd5 UTSW 2 49,162,978 (GRCm39) missense probably damaging 0.99
R4428:Mbd5 UTSW 2 49,169,776 (GRCm39) missense possibly damaging 0.94
R4556:Mbd5 UTSW 2 49,169,406 (GRCm39) missense probably damaging 1.00
R4600:Mbd5 UTSW 2 49,147,209 (GRCm39) missense probably benign 0.31
R4689:Mbd5 UTSW 2 49,148,291 (GRCm39) missense possibly damaging 0.46
R4707:Mbd5 UTSW 2 49,140,168 (GRCm39) missense probably damaging 0.99
R4718:Mbd5 UTSW 2 49,146,414 (GRCm39) missense possibly damaging 0.66
R4773:Mbd5 UTSW 2 49,164,623 (GRCm39) missense probably damaging 1.00
R4846:Mbd5 UTSW 2 49,147,009 (GRCm39) missense probably damaging 1.00
R5015:Mbd5 UTSW 2 49,148,208 (GRCm39) missense possibly damaging 0.92
R5059:Mbd5 UTSW 2 49,146,467 (GRCm39) missense probably damaging 0.96
R5268:Mbd5 UTSW 2 49,162,106 (GRCm39) missense possibly damaging 0.92
R5479:Mbd5 UTSW 2 49,162,917 (GRCm39) missense probably damaging 0.99
R5579:Mbd5 UTSW 2 49,162,826 (GRCm39) missense possibly damaging 0.94
R5591:Mbd5 UTSW 2 49,164,681 (GRCm39) missense probably damaging 1.00
R5876:Mbd5 UTSW 2 49,164,657 (GRCm39) missense probably damaging 0.98
R5886:Mbd5 UTSW 2 49,162,464 (GRCm39) missense probably damaging 1.00
R5973:Mbd5 UTSW 2 49,162,401 (GRCm39) missense probably benign 0.23
R6935:Mbd5 UTSW 2 49,169,824 (GRCm39) missense probably damaging 0.97
R7317:Mbd5 UTSW 2 49,169,755 (GRCm39) missense probably benign
R7366:Mbd5 UTSW 2 49,164,580 (GRCm39) missense probably benign
R7385:Mbd5 UTSW 2 49,162,461 (GRCm39) missense probably benign 0.01
R7402:Mbd5 UTSW 2 49,147,566 (GRCm39) missense probably damaging 1.00
R7462:Mbd5 UTSW 2 49,147,892 (GRCm39) missense possibly damaging 0.52
R7549:Mbd5 UTSW 2 49,141,355 (GRCm39) missense probably damaging 0.97
R7916:Mbd5 UTSW 2 49,147,118 (GRCm39) missense probably damaging 0.99
R7926:Mbd5 UTSW 2 49,146,335 (GRCm39) missense probably damaging 0.99
R7960:Mbd5 UTSW 2 49,169,796 (GRCm39) critical splice donor site probably null
R8273:Mbd5 UTSW 2 49,168,891 (GRCm39) missense probably damaging 0.99
R8909:Mbd5 UTSW 2 49,169,233 (GRCm39) missense probably benign 0.13
R9121:Mbd5 UTSW 2 49,148,102 (GRCm39) missense possibly damaging 0.59
R9149:Mbd5 UTSW 2 49,141,388 (GRCm39) missense probably damaging 0.98
R9506:Mbd5 UTSW 2 49,162,919 (GRCm39) missense probably damaging 0.96
R9566:Mbd5 UTSW 2 49,169,521 (GRCm39) missense probably damaging 0.96
R9756:Mbd5 UTSW 2 49,169,283 (GRCm39) missense probably benign 0.07
V7583:Mbd5 UTSW 2 49,206,422 (GRCm39) missense probably damaging 0.99
Z1176:Mbd5 UTSW 2 49,169,320 (GRCm39) missense probably benign 0.03
Predicted Primers PCR Primer
(F):5'- TGGAGATGGCTCAATCTCTCC -3'
(R):5'- TACTAGGAATAGGGTCAAGAATGCC -3'

Sequencing Primer
(F):5'- GATGGCTCAATCTCTCCAAGGACTG -3'
(R):5'- GGTCAAGAATGCCAAGTGGATCTTTC -3'
Posted On 2022-06-15