Incidental Mutation 'R3625:Vmn1r6'
ID |
269372 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r6
|
Ensembl Gene |
ENSMUSG00000115701 |
Gene Name |
vomeronasal 1 receptor 6 |
Synonyms |
V1rc20 |
MMRRC Submission |
040679-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.131)
|
Stock # |
R3625 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
6 |
Chromosomal Location |
56979340-56980251 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to T
at 56979920 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Isoleucine
at position 172
(T172I)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000154199
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000079669]
[ENSMUST00000226689]
[ENSMUST00000227131]
[ENSMUST00000227188]
[ENSMUST00000227631]
[ENSMUST00000227847]
[ENSMUST00000228285]
|
AlphaFold |
Q8R2D4 |
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000079669
AA Change: T194I
PolyPhen 2
Score 0.878 (Sensitivity: 0.82; Specificity: 0.94)
|
SMART Domains |
Protein: ENSMUSP00000078611 Gene: ENSMUSG00000115701 AA Change: T194I
Domain | Start | End | E-Value | Type |
Pfam:V1R
|
28 |
293 |
4.9e-54 |
PFAM |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000226689
AA Change: T194I
PolyPhen 2
Score 0.878 (Sensitivity: 0.82; Specificity: 0.94)
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000227131
AA Change: T194I
PolyPhen 2
Score 0.878 (Sensitivity: 0.82; Specificity: 0.94)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227188
AA Change: T172I
PolyPhen 2
Score 0.962 (Sensitivity: 0.78; Specificity: 0.95)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227631
AA Change: T172I
PolyPhen 2
Score 0.962 (Sensitivity: 0.78; Specificity: 0.95)
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000227847
AA Change: T194I
PolyPhen 2
Score 0.878 (Sensitivity: 0.82; Specificity: 0.94)
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000228285
AA Change: T194I
PolyPhen 2
Score 0.878 (Sensitivity: 0.82; Specificity: 0.94)
|
Meta Mutation Damage Score |
0.6467 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.3%
- 20x: 95.1%
|
Validation Efficiency |
100% (40/40) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 40 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Acte1 |
T |
C |
7: 143,425,591 (GRCm39) |
V80A |
possibly damaging |
Het |
Arsi |
G |
A |
18: 61,049,723 (GRCm39) |
G202E |
probably benign |
Het |
Atg3 |
T |
A |
16: 44,995,624 (GRCm39) |
I119N |
probably benign |
Het |
Cdh12 |
G |
C |
15: 21,358,842 (GRCm39) |
V89L |
probably damaging |
Het |
Cdh3 |
C |
A |
8: 107,270,310 (GRCm39) |
H396N |
probably damaging |
Het |
Crygs |
C |
T |
16: 22,624,301 (GRCm39) |
G102D |
possibly damaging |
Het |
Dab2ip |
C |
A |
2: 35,533,903 (GRCm39) |
S43* |
probably null |
Het |
Dmxl2 |
A |
G |
9: 54,300,927 (GRCm39) |
S2394P |
probably benign |
Het |
F13a1 |
T |
G |
13: 37,082,067 (GRCm39) |
N546H |
probably benign |
Het |
Fbn2 |
T |
C |
18: 58,194,814 (GRCm39) |
N1449S |
probably damaging |
Het |
Flywch1 |
T |
C |
17: 23,979,175 (GRCm39) |
|
probably benign |
Het |
Grxcr2 |
T |
A |
18: 42,131,883 (GRCm39) |
D62V |
probably damaging |
Het |
H2bc8 |
T |
C |
13: 23,755,625 (GRCm39) |
|
probably benign |
Het |
Ifnab |
A |
T |
4: 88,609,016 (GRCm39) |
I150N |
probably damaging |
Het |
Igsf8 |
T |
C |
1: 172,145,336 (GRCm39) |
V284A |
probably benign |
Het |
Kdm1a |
T |
C |
4: 136,288,419 (GRCm39) |
E388G |
possibly damaging |
Het |
Map3k8 |
G |
A |
18: 4,333,965 (GRCm39) |
R376C |
probably damaging |
Het |
Map6 |
A |
T |
7: 98,918,402 (GRCm39) |
T189S |
possibly damaging |
Het |
Mms22l |
T |
A |
4: 24,505,357 (GRCm39) |
S206T |
probably damaging |
Het |
N4bp1 |
A |
G |
8: 87,578,337 (GRCm39) |
L676S |
probably damaging |
Het |
Nkx6-2 |
A |
G |
7: 139,162,106 (GRCm39) |
F117S |
possibly damaging |
Het |
Ociad2 |
C |
T |
5: 73,481,173 (GRCm39) |
C72Y |
probably damaging |
Het |
Or10w1 |
T |
A |
19: 13,632,346 (GRCm39) |
C184* |
probably null |
Het |
Or52e15 |
A |
T |
7: 104,645,191 (GRCm39) |
F307I |
probably benign |
Het |
Pcdhb6 |
G |
T |
18: 37,469,193 (GRCm39) |
V21L |
probably damaging |
Het |
Pogk |
G |
A |
1: 166,231,081 (GRCm39) |
T82I |
probably damaging |
Het |
Pramel51 |
T |
C |
12: 88,142,731 (GRCm39) |
S296G |
probably benign |
Het |
Prkcsh |
A |
G |
9: 21,922,548 (GRCm39) |
E283G |
probably null |
Het |
Prkd3 |
C |
T |
17: 79,292,733 (GRCm39) |
R113H |
probably damaging |
Het |
Rabgef1 |
T |
C |
5: 130,240,961 (GRCm39) |
|
probably null |
Het |
Rec8 |
T |
C |
14: 55,859,954 (GRCm39) |
I234T |
possibly damaging |
Het |
Sim1 |
A |
T |
10: 50,857,432 (GRCm39) |
H394L |
probably benign |
Het |
Thy1 |
A |
G |
9: 43,958,028 (GRCm39) |
E52G |
probably damaging |
Het |
Trav14n-3 |
A |
T |
14: 53,607,543 (GRCm39) |
I4F |
probably damaging |
Het |
Trim15 |
T |
C |
17: 37,177,768 (GRCm39) |
T76A |
possibly damaging |
Het |
Ttn |
A |
G |
2: 76,599,145 (GRCm39) |
I19288T |
probably damaging |
Het |
Vmn2r52 |
A |
T |
7: 9,893,105 (GRCm39) |
L678Q |
probably damaging |
Het |
Vpreb1a |
T |
C |
16: 16,686,668 (GRCm39) |
H74R |
probably benign |
Het |
Yeats4 |
T |
C |
10: 117,056,273 (GRCm39) |
I100V |
probably benign |
Het |
Zfp36 |
C |
A |
7: 28,077,681 (GRCm39) |
A76S |
probably benign |
Het |
|
Other mutations in Vmn1r6 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00905:Vmn1r6
|
APN |
6 |
56,979,789 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01011:Vmn1r6
|
APN |
6 |
56,979,529 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01147:Vmn1r6
|
APN |
6 |
56,979,626 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01475:Vmn1r6
|
APN |
6 |
56,979,896 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01638:Vmn1r6
|
APN |
6 |
56,980,177 (GRCm39) |
nonsense |
probably null |
|
IGL01860:Vmn1r6
|
APN |
6 |
56,979,674 (GRCm39) |
nonsense |
probably null |
|
IGL01876:Vmn1r6
|
APN |
6 |
56,979,446 (GRCm39) |
missense |
probably benign |
0.12 |
IGL01988:Vmn1r6
|
APN |
6 |
56,979,650 (GRCm39) |
missense |
probably damaging |
0.99 |
R0531:Vmn1r6
|
UTSW |
6 |
56,979,583 (GRCm39) |
missense |
probably benign |
0.00 |
R1495:Vmn1r6
|
UTSW |
6 |
56,980,058 (GRCm39) |
missense |
possibly damaging |
0.58 |
R1733:Vmn1r6
|
UTSW |
6 |
56,979,607 (GRCm39) |
missense |
probably damaging |
1.00 |
R2037:Vmn1r6
|
UTSW |
6 |
56,980,109 (GRCm39) |
missense |
probably damaging |
1.00 |
R4353:Vmn1r6
|
UTSW |
6 |
56,979,677 (GRCm39) |
missense |
possibly damaging |
0.63 |
R4484:Vmn1r6
|
UTSW |
6 |
56,980,174 (GRCm39) |
missense |
probably benign |
|
R4854:Vmn1r6
|
UTSW |
6 |
56,979,683 (GRCm39) |
missense |
probably benign |
0.00 |
R5237:Vmn1r6
|
UTSW |
6 |
56,980,179 (GRCm39) |
missense |
probably damaging |
1.00 |
R5341:Vmn1r6
|
UTSW |
6 |
56,979,789 (GRCm39) |
missense |
probably damaging |
1.00 |
R5611:Vmn1r6
|
UTSW |
6 |
56,979,362 (GRCm39) |
missense |
probably damaging |
1.00 |
R6795:Vmn1r6
|
UTSW |
6 |
56,979,422 (GRCm39) |
missense |
possibly damaging |
0.85 |
R8423:Vmn1r6
|
UTSW |
6 |
56,979,495 (GRCm39) |
missense |
probably benign |
0.30 |
R9249:Vmn1r6
|
UTSW |
6 |
56,979,760 (GRCm39) |
missense |
probably benign |
|
R9582:Vmn1r6
|
UTSW |
6 |
56,979,925 (GRCm39) |
missense |
probably benign |
|
|
Predicted Primers |
PCR Primer
(F):5'- CCTTCAGTAGTAACAGGATCTTCTTTG -3'
(R):5'- TGTGGGATAGGCATTCATCAC -3'
Sequencing Primer
(F):5'- AACAGGATCTTCTTTGTTGGTGC -3'
(R):5'- GGGATAGGCATTCATCACAAACTTC -3'
|
Posted On |
2015-02-19 |