Incidental Mutation 'R1225:F13a1'
| ID |
152879 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
F13a1
|
| Ensembl Gene |
ENSMUSG00000039109 |
| Gene Name |
coagulation factor XIII, A1 subunit |
| Synonyms |
Factor XIIIA, 1200014I03Rik |
| MMRRC Submission |
039294-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R1225 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
13 |
| Chromosomal Location |
37051152-37234220 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 37209825 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Aspartic acid
at position 47
(N47D)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000128316
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000037491]
[ENSMUST00000164727]
|
| AlphaFold |
Q8BH61 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000037491
AA Change: N47D
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000048667
Gene: ENSMUSG00000039109
AA Change: N47D
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Transglut_N
|
47 |
165 |
9e-34 |
PFAM |
|
TGc
|
307 |
400 |
2.01e-45 |
SMART |
|
Pfam:Transglut_C
|
519 |
623 |
2e-26 |
PFAM |
|
Pfam:Transglut_C
|
631 |
728 |
1.3e-21 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000164727
AA Change: N47D
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000128316
Gene: ENSMUSG00000039109
AA Change: N47D
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Transglut_N
|
46 |
167 |
3e-38 |
PFAM |
|
TGc
|
307 |
400 |
2.01e-45 |
SMART |
|
Pfam:Transglut_C
|
519 |
623 |
2.2e-23 |
PFAM |
|
Pfam:Transglut_C
|
631 |
728 |
1.1e-22 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000224446
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000224783
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000225168
|
| Meta Mutation Damage Score |
0.0817 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.3%
- 10x: 96.5%
- 20x: 93.3%
|
| Validation Efficiency |
100% (43/43) |
| MGI Phenotype |
FUNCTION: This gene encodes subunit A of the coagulation factor XIII that catalyzes the final step of the blood coagulation pathway. The encoded protein associates with subunit B to form a heterotetrameric proenzyme that undergoes thrombin-mediated proteolysis to generate active factor XIIIa. The transglutaminase activity of factor XIIIa is required for the calcium-dependent crosslinking of fibrin, leading to the formation of a clot. Mice lacking the encoded protein display impaired reproduction and reduced survival due to bleeding episodes, hematothorax, hematoperitoneum and subcutaneous hemorrhage. Additionally, mice lacking the encoded protein exhibit impaired wound healing and inadequate healing of myocardial infarction. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]
PHENOTYPE: Homozygous mutant mice exhibit bleeding symptoms, increased lethality, and impaired fertility. [provided by MGI curators]
|
| Allele List at MGI |
All alleles(2) : Targeted, knock-out(2) |
| Other mutations in this stock |
Total: 40 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A730013G03Rik |
T |
A |
1: 192,515,953 (GRCm39) |
|
noncoding transcript |
Het |
| Abcb10 |
C |
T |
8: 124,688,791 (GRCm39) |
G495D |
probably damaging |
Het |
| Ahnak |
T |
A |
19: 8,980,247 (GRCm39) |
D510E |
probably damaging |
Het |
| Angptl4 |
C |
T |
17: 34,000,165 (GRCm39) |
A68T |
possibly damaging |
Het |
| Arid1a |
A |
G |
4: 133,414,676 (GRCm39) |
V1185A |
unknown |
Het |
| Atp2c2 |
C |
A |
8: 120,461,984 (GRCm39) |
Q286K |
probably damaging |
Het |
| Blzf1 |
T |
C |
1: 164,127,165 (GRCm39) |
E209G |
probably damaging |
Het |
| Bmp6 |
A |
G |
13: 38,530,257 (GRCm39) |
T117A |
probably benign |
Het |
| Cmip |
T |
C |
8: 118,172,110 (GRCm39) |
F394L |
probably damaging |
Het |
| Col6a3 |
T |
A |
1: 90,739,238 (GRCm39) |
D330V |
probably damaging |
Het |
| Crebbp |
A |
T |
16: 3,944,820 (GRCm39) |
S491R |
probably benign |
Het |
| Dedd |
G |
A |
1: 171,167,863 (GRCm39) |
|
probably null |
Het |
| Dennd4a |
A |
G |
9: 64,818,957 (GRCm39) |
H1704R |
probably benign |
Het |
| Dicer1 |
C |
T |
12: 104,657,866 (GRCm39) |
V1903I |
probably damaging |
Het |
| Dnah9 |
A |
G |
11: 65,761,886 (GRCm39) |
V3868A |
possibly damaging |
Het |
| Eif5b |
A |
G |
1: 38,076,709 (GRCm39) |
I674V |
probably damaging |
Het |
| Fancd2 |
T |
C |
6: 113,512,822 (GRCm39) |
S53P |
probably damaging |
Het |
| Fsip1 |
C |
A |
2: 118,078,831 (GRCm39) |
L170F |
probably damaging |
Het |
| Git2 |
A |
T |
5: 114,871,239 (GRCm39) |
|
probably benign |
Het |
| Gm9742 |
T |
C |
13: 8,079,875 (GRCm39) |
|
noncoding transcript |
Het |
| Heatr4 |
C |
T |
12: 84,024,820 (GRCm39) |
E334K |
probably benign |
Het |
| Hoga1 |
T |
G |
19: 42,058,628 (GRCm39) |
V110G |
probably damaging |
Het |
| Ighv6-4 |
T |
A |
12: 114,370,170 (GRCm39) |
D75V |
probably damaging |
Het |
| Inhca |
A |
T |
9: 103,132,038 (GRCm39) |
|
probably benign |
Het |
| Med15 |
G |
T |
16: 17,540,652 (GRCm39) |
S31R |
probably damaging |
Het |
| Nbeal2 |
T |
C |
9: 110,461,954 (GRCm39) |
E1467G |
probably damaging |
Het |
| Or2ag1 |
A |
T |
7: 106,313,731 (GRCm39) |
D52E |
probably benign |
Het |
| Or2t6 |
T |
A |
14: 14,175,600 (GRCm38) |
I161F |
possibly damaging |
Het |
| Or5ac19 |
T |
C |
16: 59,089,587 (GRCm39) |
T148A |
probably benign |
Het |
| Papss1 |
T |
C |
3: 131,285,062 (GRCm39) |
|
probably benign |
Het |
| Pde4d |
A |
T |
13: 110,086,755 (GRCm39) |
M610L |
probably benign |
Het |
| Prickle4 |
T |
G |
17: 47,999,614 (GRCm39) |
|
probably null |
Het |
| Sema3g |
A |
G |
14: 30,942,636 (GRCm39) |
Y79C |
probably damaging |
Het |
| Setbp1 |
T |
A |
18: 78,901,423 (GRCm39) |
D748V |
probably damaging |
Het |
| Slc46a2 |
A |
T |
4: 59,914,125 (GRCm39) |
V266E |
probably benign |
Het |
| Slc9a8 |
T |
C |
2: 167,313,443 (GRCm39) |
I435T |
probably benign |
Het |
| Snx29 |
T |
C |
16: 11,238,550 (GRCm39) |
|
probably benign |
Het |
| Son |
C |
T |
16: 91,454,228 (GRCm39) |
R992C |
probably damaging |
Het |
| Stxbp5 |
T |
C |
10: 9,688,135 (GRCm39) |
N389D |
possibly damaging |
Het |
| Vmn1r28 |
C |
T |
6: 58,242,951 (GRCm39) |
Q265* |
probably null |
Het |
|
| Other mutations in F13a1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01304:F13a1
|
APN |
13 |
37,172,852 (GRCm39) |
missense |
probably benign |
0.11 |
|
IGL01444:F13a1
|
APN |
13 |
37,102,551 (GRCm39) |
missense |
probably null |
1.00 |
|
IGL02188:F13a1
|
APN |
13 |
37,090,035 (GRCm39) |
splice site |
probably benign |
|
|
IGL02591:F13a1
|
APN |
13 |
37,082,031 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02660:F13a1
|
APN |
13 |
37,127,868 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
IGL03244:F13a1
|
APN |
13 |
37,172,870 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
IGL03401:F13a1
|
APN |
13 |
37,082,054 (GRCm39) |
missense |
probably benign |
0.00 |
|
F6893:F13a1
|
UTSW |
13 |
37,155,999 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0082:F13a1
|
UTSW |
13 |
37,172,927 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0657:F13a1
|
UTSW |
13 |
37,152,079 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R1430:F13a1
|
UTSW |
13 |
37,082,105 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1608:F13a1
|
UTSW |
13 |
37,052,785 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1883:F13a1
|
UTSW |
13 |
37,172,981 (GRCm39) |
missense |
probably benign |
0.01 |
|
R2115:F13a1
|
UTSW |
13 |
37,172,831 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2121:F13a1
|
UTSW |
13 |
37,209,653 (GRCm39) |
missense |
probably benign |
0.01 |
|
R2122:F13a1
|
UTSW |
13 |
37,209,653 (GRCm39) |
missense |
probably benign |
0.01 |
|
R2125:F13a1
|
UTSW |
13 |
37,076,815 (GRCm39) |
missense |
probably benign |
0.15 |
|
R2392:F13a1
|
UTSW |
13 |
37,127,971 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R3618:F13a1
|
UTSW |
13 |
37,127,967 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3625:F13a1
|
UTSW |
13 |
37,082,067 (GRCm39) |
missense |
probably benign |
0.31 |
|
R3772:F13a1
|
UTSW |
13 |
37,082,108 (GRCm39) |
missense |
probably benign |
|
|
R3838:F13a1
|
UTSW |
13 |
37,231,398 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3857:F13a1
|
UTSW |
13 |
37,209,668 (GRCm39) |
missense |
probably benign |
0.32 |
|
R3937:F13a1
|
UTSW |
13 |
37,100,875 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4934:F13a1
|
UTSW |
13 |
37,061,736 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4974:F13a1
|
UTSW |
13 |
37,100,837 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5033:F13a1
|
UTSW |
13 |
37,172,830 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5194:F13a1
|
UTSW |
13 |
37,156,037 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5740:F13a1
|
UTSW |
13 |
37,082,178 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5753:F13a1
|
UTSW |
13 |
37,082,082 (GRCm39) |
nonsense |
probably null |
|
|
R6188:F13a1
|
UTSW |
13 |
37,209,752 (GRCm39) |
missense |
probably benign |
0.12 |
|
R7048:F13a1
|
UTSW |
13 |
37,082,117 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7197:F13a1
|
UTSW |
13 |
37,100,860 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7816:F13a1
|
UTSW |
13 |
37,209,745 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7843:F13a1
|
UTSW |
13 |
37,209,745 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7902:F13a1
|
UTSW |
13 |
37,172,913 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8124:F13a1
|
UTSW |
13 |
37,209,779 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8443:F13a1
|
UTSW |
13 |
37,209,692 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8856:F13a1
|
UTSW |
13 |
37,100,859 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8864:F13a1
|
UTSW |
13 |
37,061,753 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9026:F13a1
|
UTSW |
13 |
37,102,506 (GRCm39) |
missense |
probably null |
1.00 |
|
R9092:F13a1
|
UTSW |
13 |
37,089,993 (GRCm39) |
missense |
probably benign |
0.17 |
|
R9268:F13a1
|
UTSW |
13 |
37,076,910 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9274:F13a1
|
UTSW |
13 |
37,052,761 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9497:F13a1
|
UTSW |
13 |
37,082,118 (GRCm39) |
missense |
probably benign |
0.05 |
|
R9645:F13a1
|
UTSW |
13 |
37,082,154 (GRCm39) |
missense |
probably benign |
|
|
Z1088:F13a1
|
UTSW |
13 |
37,172,986 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AAATTGAGCCAGTGCCCACGTC -3'
(R):5'- CTGAACACTTGAACTCTGACCCCTG -3'
Sequencing Primer
(F):5'- CCTAGCATCATGGCTAAGGCAG -3'
(R):5'- GATCCTGTGCTCTGAAAAGAACTC -3'
|
| Posted On |
2014-01-29 |
Incidental Mutation